FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1361, 99 aa 1>>>pF1KE1361 99 - 99 aa - 99 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.3860+/-0.000296; mu= 14.3259+/- 0.018 mean_var=55.8262+/-11.079, 0's: 0 Z-trim(117.4): 57 B-trim: 46 in 1/51 Lambda= 0.171654 statistics sampled from 29306 (29364) to 29306 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.749), E-opt: 0.2 (0.344), width: 16 Scan time: 4.310 The best scores are: opt bits E(85289) NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 653 168.8 1.3e-42 NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107) 238 66.1 1.2e-11 NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107) 235 65.3 2e-11 NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107) 225 62.8 1.1e-10 NP_002695 (OMIM: 121010) platelet basic protein pr ( 128) 221 61.9 2.5e-10 NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 p ( 114) 220 61.6 2.7e-10 NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 196 55.7 1.7e-08 XP_005265753 (OMIM: 173460) PREDICTED: platelet fa ( 110) 193 54.9 2.7e-08 NP_002610 (OMIM: 173460) platelet factor 4 precurs ( 101) 190 54.2 4.3e-08 NP_002611 (OMIM: 173461) platelet factor 4 variant ( 104) 183 52.4 1.4e-07 NP_006410 (OMIM: 605149) C-X-C motif chemokine 13 ( 109) 181 51.9 2.1e-07 XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif ( 109) 181 51.9 2.1e-07 NP_954637 (OMIM: 600835,609423) stromal cell-deriv ( 89) 164 47.7 3.4e-06 NP_000600 (OMIM: 600835,609423) stromal cell-deriv ( 93) 164 47.7 3.5e-06 NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119) 164 47.8 4.2e-06 NP_001171605 (OMIM: 600835,609423) stromal cell-de ( 140) 161 47.1 7.9e-06 NP_002979 (OMIM: 603757) C-C motif chemokine 18 pr ( 89) 155 45.4 1.6e-05 NP_001001437 (OMIM: 609468) C-C motif chemokine 3- ( 93) 153 45.0 2.3e-05 NP_066286 (OMIM: 601395,609423) C-C motif chemokin ( 93) 153 45.0 2.3e-05 NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 151 44.5 3.2e-05 NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 p ( 125) 152 44.8 3.4e-05 NP_005399 (OMIM: 601391) C-C motif chemokine 13 pr ( 98) 142 42.3 0.00016 NP_001556 (OMIM: 147310) C-X-C motif chemokine 10 ( 98) 141 42.0 0.00019 NP_002974 (OMIM: 182283,609423) C-C motif chemokin ( 92) 138 41.2 0.0003 NP_996890 (OMIM: 603782) C-C motif chemokine 4-lik ( 92) 138 41.2 0.0003 NP_002977 (OMIM: 600807,601156,609423) eotaxin pre ( 97) 137 41.0 0.00037 NP_006264 (OMIM: 158106) C-C motif chemokine 7 pre ( 99) 136 40.8 0.00045 NP_002975 (OMIM: 182284) C-C motif chemokine 4 pre ( 92) 134 40.2 0.00059 NP_004582 (OMIM: 601960) C-C motif chemokine 20 is ( 96) 131 39.5 0.001 NP_005614 (OMIM: 602283) C-C motif chemokine 8 pre ( 99) 129 39.0 0.0015 NP_002973 (OMIM: 158105,182940,607948,609423) C-C ( 99) 128 38.8 0.0018 NP_001123518 (OMIM: 601960) C-C motif chemokine 20 ( 95) 126 38.3 0.0024 NP_001278397 (OMIM: 610757) C-C motif chemokine 4- ( 87) 120 36.8 0.0063 >>NP_000575 (OMIM: 146930) interleukin-8 precursor [Homo (99 aa) initn: 653 init1: 653 opt: 653 Z-score: 886.1 bits: 168.8 E(85289): 1.3e-42 Smith-Waterman score: 653; 100.0% identity (100.0% similar) in 99 aa overlap (1-99:1-99) 10 20 30 40 50 60 pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH 10 20 30 40 50 60 70 80 90 pF1KE1 CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS ::::::::::::::::::::::::::::::::::::::: NP_000 CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS 70 80 90 >>NP_001502 (OMIM: 155730) growth-regulated alpha protei (107 aa) initn: 236 init1: 172 opt: 238 Z-score: 330.2 bits: 66.1 E(85289): 1.2e-11 Smith-Waterman score: 238; 43.8% identity (70.8% similar) in 89 aa overlap (5-93:16-101) 10 20 30 40 pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFI : :::: .:..:. . :. : ::::::..: . .::: : NP_001 MARAALSAAPSNPRLLRVALLLLLLVAAG--RRAAGASVATELRCQCLQTL-QGIHPKNI 10 20 30 40 50 50 60 70 80 90 pF1KE1 KELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS . . : :::::.::.:. :..::. ::.: :....::.: NP_001 QSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSN 60 70 80 90 100 >>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu (107 aa) initn: 213 init1: 148 opt: 235 Z-score: 326.2 bits: 65.3 E(85289): 2e-11 Smith-Waterman score: 235; 41.7% identity (70.8% similar) in 96 aa overlap (5-99:16-107) 10 20 30 40 pF1KE1 MTSKLAVALLAAFLISAAL-CEGAVLPRSAKELRCQCIKTYSKPFHPKF : :::: .:..:. :: : : ::::::..: . .: : NP_002 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPL---ATELRCQCLQTL-QGIHLKN 10 20 30 40 50 50 60 70 80 90 pF1KE1 IKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS :. ..: :::::.::.:. :..:.. ::.: :....::.:: .... NP_002 IQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN 60 70 80 90 100 >>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu (107 aa) initn: 215 init1: 150 opt: 225 Z-score: 312.8 bits: 62.8 E(85289): 1.1e-10 Smith-Waterman score: 225; 40.7% identity (70.3% similar) in 91 aa overlap (5-95:16-103) 10 20 30 40 pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFI : :::: .:..:. . :. . ::::::..: . .: : : NP_002 MAHATLSAAPSNPRLLRVALLLLLLVAAS--RRAAGASVVTELRCQCLQTL-QGIHLKNI 10 20 30 40 50 50 60 70 80 90 pF1KE1 KELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS . . : :::::.::.:. :..:.. ::.: ::...::.:.. NP_002 QSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN 60 70 80 90 100 >>NP_002695 (OMIM: 121010) platelet basic protein prepro (128 aa) initn: 199 init1: 150 opt: 221 Z-score: 306.4 bits: 61.9 E(85289): 2.5e-10 Smith-Waterman score: 221; 47.8% identity (75.4% similar) in 69 aa overlap (31-99:60-127) 10 20 30 40 50 60 pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH ::::.:::: : .::: :. :.:: .: : NP_002 LTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSG-IHPKNIQSLEVIGKGTH 30 40 50 60 70 80 70 80 90 pF1KE1 CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS : ..:.:. :.:::..:::: ....:.: : :.. NP_002 CNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD 90 100 110 120 >>NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 precu (114 aa) initn: 236 init1: 174 opt: 220 Z-score: 305.8 bits: 61.6 E(85289): 2.7e-10 Smith-Waterman score: 220; 34.0% identity (77.7% similar) in 94 aa overlap (2-93:15-107) 10 20 30 40 pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSA--KELRCQCIKTYSKPFH .:.: . :. .:.. ... : .: .:::: :..: .. : NP_002 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQT-TQGVH 10 20 30 40 50 50 60 70 80 90 pF1KE1 PKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS ::.:..:.:. ::.:...:....:..:.:.::::. ....:..:.: NP_002 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN 60 70 80 90 100 110 >>NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 precu (114 aa) initn: 203 init1: 160 opt: 196 Z-score: 273.7 bits: 55.7 E(85289): 1.7e-08 Smith-Waterman score: 196; 37.1% identity (80.0% similar) in 70 aa overlap (26-93:39-107) 10 20 30 40 50 pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSA--KELRCQCIKTYSKPFHPKFIKELR : :: :::: :... . .:: : .:. NP_002 ARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLR-VNPKTIGKLQ 10 20 30 40 50 60 60 70 80 90 pF1KE1 VIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS :. .::.:...:....:..:...::::. ....:..:.: NP_002 VFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN 70 80 90 100 110 >>XP_005265753 (OMIM: 173460) PREDICTED: platelet factor (110 aa) initn: 131 init1: 131 opt: 193 Z-score: 269.9 bits: 54.9 E(85289): 2.7e-08 Smith-Waterman score: 193; 36.7% identity (72.2% similar) in 79 aa overlap (19-94:32-109) 10 20 30 40 pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKE---LRCQCIKTYSKPFH : :.:. :.: :.: :.:: :. . XP_005 ITATLNGEPAECLATVPGAAPAPPTWLEQLLSGGGVIYAEAEEDGDLQCLCVKTTSQ-VR 10 20 30 40 50 60 50 60 70 80 90 pF1KE1 PKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS :. : :.::..:::: ....:. :..::..::: . .....:.:. XP_005 PRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES 70 80 90 100 110 >>NP_002610 (OMIM: 173460) platelet factor 4 precursor [ (101 aa) initn: 131 init1: 131 opt: 190 Z-score: 266.3 bits: 54.2 E(85289): 4.3e-08 Smith-Waterman score: 190; 29.3% identity (71.7% similar) in 92 aa overlap (3-94:10-100) 10 20 30 40 50 pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELR :. .. .:. .:. .. ... . .:.: :.:: :. .:. : :. NP_002 MSSAAGFCASRPGLLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQ-VRPRHITSLE 10 20 30 40 50 60 70 80 90 pF1KE1 VIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS ::..:::: ....:. :..::..::: . .....:.:. NP_002 VIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES 60 70 80 90 100 >>NP_002611 (OMIM: 173461) platelet factor 4 variant pre (104 aa) initn: 131 init1: 131 opt: 183 Z-score: 256.8 bits: 52.4 E(85289): 1.4e-07 Smith-Waterman score: 183; 28.3% identity (69.6% similar) in 92 aa overlap (3-94:13-103) 10 20 30 40 50 pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIK .. . .:: .:. ... . . . .:.: :.:: :. .:. : NP_002 MSSAARSRLTRATRQEMLFLALLLLPVVVAFARAEAEEDGDLQCLCVKTTSQ-VRPRHIT 10 20 30 40 50 60 70 80 90 pF1KE1 ELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS :.::..:::: ....:. :..::..::: . ...... :. NP_002 SLEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEHLES 60 70 80 90 100 99 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:31:26 2016 done: Mon Nov 7 01:31:26 2016 Total Scan time: 4.310 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]