FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1361, 99 aa 1>>>pF1KE1361 99 - 99 aa - 99 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.3797+/-0.000614; mu= 14.2516+/- 0.037 mean_var=54.2623+/-10.855, 0's: 0 Z-trim(110.8): 43 B-trim: 593 in 1/49 Lambda= 0.174111 statistics sampled from 11817 (11860) to 11817 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.364), width: 16 Scan time: 1.390 The best scores are: opt bits E(32554) CCDS34005.1 CXCL8 gene_id:3576|Hs108|chr4 ( 99) 653 170.9 1.1e-43 CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4 ( 107) 238 66.7 2.8e-12 CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4 ( 107) 235 66.0 4.8e-12 CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4 ( 107) 225 63.5 2.7e-11 CCDS3563.1 PPBP gene_id:5473|Hs108|chr4 ( 128) 221 62.5 6.3e-11 CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4 ( 114) 220 62.2 6.8e-11 >>CCDS34005.1 CXCL8 gene_id:3576|Hs108|chr4 (99 aa) initn: 653 init1: 653 opt: 653 Z-score: 897.7 bits: 170.9 E(32554): 1.1e-43 Smith-Waterman score: 653; 100.0% identity (100.0% similar) in 99 aa overlap (1-99:1-99) 10 20 30 40 50 60 pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH 10 20 30 40 50 60 70 80 90 pF1KE1 CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS ::::::::::::::::::::::::::::::::::::::: CCDS34 CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS 70 80 90 >>CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4 (107 aa) initn: 236 init1: 172 opt: 238 Z-score: 333.8 bits: 66.7 E(32554): 2.8e-12 Smith-Waterman score: 238; 43.8% identity (70.8% similar) in 89 aa overlap (5-93:16-101) 10 20 30 40 pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFI : :::: .:..:. . :. : ::::::..: . .::: : CCDS47 MARAALSAAPSNPRLLRVALLLLLLVAAG--RRAAGASVATELRCQCLQTL-QGIHPKNI 10 20 30 40 50 50 60 70 80 90 pF1KE1 KELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS . . : :::::.::.:. :..::. ::.: :....::.: CCDS47 QSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNSDKSN 60 70 80 90 100 >>CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4 (107 aa) initn: 213 init1: 148 opt: 235 Z-score: 329.8 bits: 66.0 E(32554): 4.8e-12 Smith-Waterman score: 235; 41.7% identity (70.8% similar) in 96 aa overlap (5-99:16-107) 10 20 30 40 pF1KE1 MTSKLAVALLAAFLISAAL-CEGAVLPRSAKELRCQCIKTYSKPFHPKF : :::: .:..:. :: : : ::::::..: . .: : CCDS34 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPL---ATELRCQCLQTL-QGIHLKN 10 20 30 40 50 50 60 70 80 90 pF1KE1 IKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS :. ..: :::::.::.:. :..:.. ::.: :....::.:: .... CCDS34 IQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN 60 70 80 90 100 >>CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4 (107 aa) initn: 215 init1: 150 opt: 225 Z-score: 316.2 bits: 63.5 E(32554): 2.7e-11 Smith-Waterman score: 225; 40.7% identity (70.3% similar) in 91 aa overlap (5-95:16-103) 10 20 30 40 pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFI : :::: .:..:. . :. . ::::::..: . .: : : CCDS34 MAHATLSAAPSNPRLLRVALLLLLLVAAS--RRAAGASVVTELRCQCLQTL-QGIHLKNI 10 20 30 40 50 50 60 70 80 90 pF1KE1 KELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS . . : :::::.::.:. :..:.. ::.: ::...::.:.. CCDS34 QSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN 60 70 80 90 100 >>CCDS3563.1 PPBP gene_id:5473|Hs108|chr4 (128 aa) initn: 199 init1: 150 opt: 221 Z-score: 309.7 bits: 62.5 E(32554): 6.3e-11 Smith-Waterman score: 221; 47.8% identity (75.4% similar) in 69 aa overlap (31-99:60-127) 10 20 30 40 50 60 pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH ::::.:::: : .::: :. :.:: .: : CCDS35 LTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSG-IHPKNIQSLEVIGKGTH 30 40 50 60 70 80 70 80 90 pF1KE1 CANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS : ..:.:. :.:::..:::: ....:.: : :.. CCDS35 CNQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD 90 100 110 120 >>CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4 (114 aa) initn: 236 init1: 174 opt: 220 Z-score: 309.0 bits: 62.2 E(32554): 6.8e-11 Smith-Waterman score: 220; 34.0% identity (77.7% similar) in 94 aa overlap (2-93:15-107) 10 20 30 40 pF1KE1 MTSKLAVALLAAFLISAALCEGAVLPRSA--KELRCQCIKTYSKPFH .:.: . :. .:.. ... : .: .:::: :..: .. : CCDS34 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQT-TQGVH 10 20 30 40 50 50 60 70 80 90 pF1KE1 PKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS ::.:..:.:. ::.:...:....:..:.:.::::. ....:..:.: CCDS34 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN 60 70 80 90 100 110 99 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:31:25 2016 done: Mon Nov 7 01:31:25 2016 Total Scan time: 1.390 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]