FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4568, 721 aa 1>>>pF1KE4568 721 - 721 aa - 721 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8049+/-0.000322; mu= 20.1214+/- 0.021 mean_var=112.1294+/-22.018, 0's: 0 Z-trim(118.1): 67 B-trim: 0 in 0/55 Lambda= 0.121120 statistics sampled from 30674 (30742) to 30674 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.36), width: 16 Scan time: 11.370 The best scores are: opt bits E(85289) NP_003898 (OMIM: 603896,603945) translation initia ( 721) 4776 845.7 0 XP_011511567 (OMIM: 603896,603945) PREDICTED: tran ( 471) 3090 550.9 4.3e-156 XP_011511568 (OMIM: 603896,603945) PREDICTED: tran ( 442) 2912 519.7 9.5e-147 >>NP_003898 (OMIM: 603896,603945) translation initiation (721 aa) initn: 4776 init1: 4776 opt: 4776 Z-score: 4513.2 bits: 845.7 E(85289): 0 Smith-Waterman score: 4776; 99.9% identity (100.0% similar) in 721 aa overlap (1-721:1-721) 10 20 30 40 50 60 pF1KE4 MAAPVVAPPGVVVSRANKRSGAGPGGSGGGGARGAEEEPPPPLQAVLVADSFDRRFFPIS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MAAPVVAPPGVVVSRANKRSGAGPGGSGGGGARGAEEEPPPPLQAVLVADSFDRRFFPIS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 KDQPRVLLPLANVALIDYTLEFLTATGVQETFVFCCWKAAQIKEHLLKSKWCRPTSLNVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 KDQPRVLLPLANVALIDYTLEFLTATGVQETFVFCCWKAAQIKEHLLKSKWCRPTSLNVV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 RIITSELYRSLGDVLRDVDAKALVRSDFLLVYGDVISNINITRALEEHRLRRKLEKNVSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 RIITSELYRSLGDVLRDVDAKALVRSDFLLVYGDVISNINITRALEEHRLRRKLEKNVSV 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 MTMIFKESSPSHPTRCHEDNVVVAVDSTTNRVLHFQKTQGLRRFAFPLSLFQGSSDGVEV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MTMIFKESSPSHPTRCHEDNVVVAVDSTTNRVLHFQKTQGLRRFAFPLSLFQGSSDGVEV 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 RYDLLDCHISICSPQVAQLFTDNFDYQTRDDFVRGLLVNEEILGNQIHMHVTAKEYGARV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 RYDLLDCHISICSPQVAQLFTDNFDYQTRDDFVRGLLVNEEILGNQIHMHVTAKEYGARV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 SNLHMYSAVCADVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYRGPEVSLGHGSILEENV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 SNLHMYSAVCADVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYRGPEVSLGHGSILEENV 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 LLGSGTVIGSNCFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAAGAQIHQSLLCDNAEVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LLGSGTVIGSNCFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAAGAQIHQSLLCDNAEVK 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE4 ERVTLKPRSVLTSQVVVGPNITLPEGSVISLHPPDAEEDEDDGEFSDDSGADQEKDKVKM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 ERVTLKPRSVLTSQVVVGPNITLPEGSVISLHPPDAEEDEDDGEFSDDSGADQEKDKVKM 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE4 KGYNPAEVGAAGKGYLWKAAGMNMEEEEELQQNLWGLKINMEEESESESEQSMDSEEPDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 KGYNPAEVGAAGKGYLWKAAGMNMEEEEELQQNLWGLKINMEEESESESEQSMDSEEPDS 490 500 510 520 530 540 550 560 570 580 590 600 pF1KE4 RGGSPQMDDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNVSLKEVMQVLSHVV ::::::::::::::::::::::::::::::::::::::::::::::.::::::::::::: NP_003 RGGSPQMDDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVV 550 560 570 580 590 600 610 620 630 640 650 660 pF1KE4 LEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 LEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALG 610 620 630 640 650 660 670 680 690 700 710 720 pF1KE4 ISMAKVLMAFYQLEILAEETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEESSED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 ISMAKVLMAFYQLEILAEETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEESSED 670 680 690 700 710 720 pF1KE4 D : NP_003 D >>XP_011511567 (OMIM: 603896,603945) PREDICTED: translat (471 aa) initn: 3090 init1: 3090 opt: 3090 Z-score: 2923.3 bits: 550.9 E(85289): 4.3e-156 Smith-Waterman score: 3090; 99.8% identity (100.0% similar) in 467 aa overlap (255-721:5-471) 230 240 250 260 270 280 pF1KE4 AFPLSLFQGSSDGVEVRYDLLDCHISICSPQVAQLFTDNFDYQTRDDFVRGLLVNEEILG :::::::::::::::::::::::::::::: XP_011 MLGLQVAQLFTDNFDYQTRDDFVRGLLVNEEILG 10 20 30 290 300 310 320 330 340 pF1KE4 NQIHMHVTAKEYGARVSNLHMYSAVCADVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 NQIHMHVTAKEYGARVSNLHMYSAVCADVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYR 40 50 60 70 80 90 350 360 370 380 390 400 pF1KE4 GPEVSLGHGSILEENVLLGSGTVIGSNCFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GPEVSLGHGSILEENVLLGSGTVIGSNCFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAA 100 110 120 130 140 150 410 420 430 440 450 460 pF1KE4 GAQIHQSLLCDNAEVKERVTLKPRSVLTSQVVVGPNITLPEGSVISLHPPDAEEDEDDGE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GAQIHQSLLCDNAEVKERVTLKPRSVLTSQVVVGPNITLPEGSVISLHPPDAEEDEDDGE 160 170 180 190 200 210 470 480 490 500 510 520 pF1KE4 FSDDSGADQEKDKVKMKGYNPAEVGAAGKGYLWKAAGMNMEEEEELQQNLWGLKINMEEE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FSDDSGADQEKDKVKMKGYNPAEVGAAGKGYLWKAAGMNMEEEEELQQNLWGLKINMEEE 220 230 240 250 260 270 530 540 550 560 570 580 pF1KE4 SESESEQSMDSEEPDSRGGSPQMDDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 SESESEQSMDSEEPDSRGGSPQMDDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYA 280 290 300 310 320 330 590 600 610 620 630 640 pF1KE4 YNVSLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYIKRAADHLE ::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YNISLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYIKRAADHLE 340 350 360 370 380 390 650 660 670 680 690 700 pF1KE4 ALAAIEDFFLEHEALGISMAKVLMAFYQLEILAEETILSWFSQRDTTDKGQQLRKNQQLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ALAAIEDFFLEHEALGISMAKVLMAFYQLEILAEETILSWFSQRDTTDKGQQLRKNQQLQ 400 410 420 430 440 450 710 720 pF1KE4 RFIQWLKEAEEESSEDD ::::::::::::::::: XP_011 RFIQWLKEAEEESSEDD 460 470 >>XP_011511568 (OMIM: 603896,603945) PREDICTED: translat (442 aa) initn: 2912 init1: 2912 opt: 2912 Z-score: 2755.6 bits: 519.7 E(85289): 9.5e-147 Smith-Waterman score: 2912; 99.8% identity (100.0% similar) in 440 aa overlap (282-721:3-442) 260 270 280 290 300 310 pF1KE4 CSPQVAQLFTDNFDYQTRDDFVRGLLVNEEILGNQIHMHVTAKEYGARVSNLHMYSAVCA :::::::::::::::::::::::::::::: XP_011 MLILGNQIHMHVTAKEYGARVSNLHMYSAVCA 10 20 30 320 330 340 350 360 370 pF1KE4 DVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYRGPEVSLGHGSILEENVLLGSGTVIGSN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYRGPEVSLGHGSILEENVLLGSGTVIGSN 40 50 60 70 80 90 380 390 400 410 420 430 pF1KE4 CFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAAGAQIHQSLLCDNAEVKERVTLKPRSVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 CFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAAGAQIHQSLLCDNAEVKERVTLKPRSVL 100 110 120 130 140 150 440 450 460 470 480 490 pF1KE4 TSQVVVGPNITLPEGSVISLHPPDAEEDEDDGEFSDDSGADQEKDKVKMKGYNPAEVGAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TSQVVVGPNITLPEGSVISLHPPDAEEDEDDGEFSDDSGADQEKDKVKMKGYNPAEVGAA 160 170 180 190 200 210 500 510 520 530 540 550 pF1KE4 GKGYLWKAAGMNMEEEEELQQNLWGLKINMEEESESESEQSMDSEEPDSRGGSPQMDDIK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GKGYLWKAAGMNMEEEEELQQNLWGLKINMEEESESESEQSMDSEEPDSRGGSPQMDDIK 220 230 240 250 260 270 560 570 580 590 600 610 pF1KE4 VFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNVSLKEVMQVLSHVVLEFPLQQMDSP :::::::::::::::::::::::::::::::::::.:::::::::::::::::::::::: XP_011 VFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSP 280 290 300 310 320 330 620 630 640 650 660 670 pF1KE4 LDSSRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALGISMAKVLMAFY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LDSSRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALGISMAKVLMAFY 340 350 360 370 380 390 680 690 700 710 720 pF1KE4 QLEILAEETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEESSEDD :::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QLEILAEETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEESSEDD 400 410 420 430 440 721 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sat Nov 5 23:52:15 2016 done: Sat Nov 5 23:52:16 2016 Total Scan time: 11.370 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]