(Circular) (Six-base) MAPSORT of: pFN21AB6437.seq Check: 5136 from: 1 to: 5644 pFN21AB6437 5644 bp With 182 enzymes: SgfI * April 15, 2010 09:24 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3454 278 Size: 53 83 186 936 1918 2468 Fragments arranged by size: 2468 1918 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2346 2987 1937 Size: 409 641 4594 Fragments arranged by size: 4594 641 409 Acc65I G'GTAC_C Cuts at: 2965 2965 Size: 5644 AclI AA'CG_TT Cuts at: 1563 3771 4144 1563 Size: 2208 373 3063 Fragments arranged by size: 3063 2208 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2594 3707 5091 5359 1632 Size: 962 1113 1384 268 1917 Fragments arranged by size: 1917 1384 1113 962 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5447 AflIII A'CryG_T Cuts at: 1203 4543 5520 1203 Size: 3340 977 1327 Fragments arranged by size: 3340 1327 977 AgeI A'CCGG_T Cuts at: 4475 4475 Size: 5644 AhdI GACnn_n'nnGTC Cuts at: 4373 4373 Size: 5644 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5644 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5644 AlwNI CAG_nnn'CTG Cuts at: 3387 4959 3387 Size: 1572 4072 ApaLI G'TGCA_C Cuts at: 2655 3701 4857 2655 Size: 1046 1156 3442 Fragments arranged by size: 3442 1156 1046 ApoI r'AATT_y Cuts at: 1493 2119 2162 2328 2449 2953 3179 3331 5440 Size: 626 43 166 121 504 226 152 2109 Cuts at: 5440 1493 Size: 1697 Fragments arranged by size: 2109 1697 626 504 226 166 152 121 43 AseI AT'TA_AT Cuts at: 160 1032 4198 160 Size: 872 3166 1606 Fragments arranged by size: 3166 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5644 AvaI C'yCGr_G Cuts at: 1870 1943 2969 1870 Size: 73 1026 4545 Fragments arranged by size: 4545 1026 73 AvrII C'CTAG_G Cuts at: 2875 2875 Size: 5644 BamHI G'GATC_C Cuts at: 2974 3341 2974 Size: 367 5277 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2965 4420 618 Size: 325 217 627 1178 1455 1842 Fragments arranged by size: 1842 1455 1178 627 325 217 BanII G_rGCy'C Cuts at: 1391 2038 2963 1391 Size: 647 925 4072 Fragments arranged by size: 4072 925 647 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4673 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3835 3869 1903 Size: 34 1898 34 3678 Fragments arranged by size: 3678 1898 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2002 3536 4746 2002 Size: 1534 1210 2900 Fragments arranged by size: 2900 1534 1210 BclI T'GATC_A Cuts at: 1548 1548 Size: 5644 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2079 4255 136 Size: 107 122 71 631 605 407 2176 1525 Fragments arranged by size: 2176 1525 631 605 407 122 107 71 BglII A'GATC_T Cuts at: 5639 5639 Size: 5644 BlpI GC'TnA_GC Cuts at: 3061 3061 Size: 5644 Bme1580I G_kGCm'C Cuts at: 1790 2659 3705 4861 1790 Size: 869 1046 1156 2573 Fragments arranged by size: 2573 1156 1046 869 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5644 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3375 4333 442 Size: 416 53 83 399 24 1958 958 1753 Fragments arranged by size: 1958 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5644 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2507 2507 Size: 5644 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2288 4304 1239 Size: 1049 2016 2579 Fragments arranged by size: 2579 2016 1049 Bpu10I CC'TnA_GC Cuts at: 2139 2478 2139 Size: 339 5305 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3769 4634 4932 3769 Size: 865 298 4481 Fragments arranged by size: 4481 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2431 4307 882 Size: 617 932 1876 2219 Fragments arranged by size: 2219 1876 932 617 BsaAI yAC'GTr Cuts at: 493 1204 3435 493 Size: 711 2231 2702 Fragments arranged by size: 2702 2231 711 BsaBI GATnn'nnATC Cuts at: 5638 5638 Size: 5644 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3451 3833 4468 275 Size: 53 83 186 936 1918 382 635 1451 Fragments arranged by size: 1918 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4077 4475 4749 4896 5307 4077 Size: 398 274 147 411 4414 Fragments arranged by size: 4414 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2709 2739 1178 Size: 30 165 30 1306 30 4083 Fragments arranged by size: 4083 1306 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2547 1186 Size: 1361 4283 BseYI C'CCAG_C Cuts at: 2037 2060 4847 5343 2037 Size: 23 2787 496 2338 Fragments arranged by size: 2787 2338 496 23 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5071 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3094 3855 4883 1540 Size: 275 186 1093 761 1028 2301 Fragments arranged by size: 2301 1093 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2659 3705 3790 4861 2659 Size: 1046 85 1071 3442 Fragments arranged by size: 3442 1071 1046 85 BsmI GAATG_Cn' Cuts at: 2303 3155 3248 2303 Size: 852 93 4699 Fragments arranged by size: 4699 852 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2038 2659 2963 3705 3790 4861 1391 Size: 399 248 621 304 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 621 399 304 248 85 BspEI T'CCGG_A Cuts at: 5307 5307 Size: 5644 BspHI T'CATG_A Cuts at: 3533 5263 3533 Size: 1730 3914 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2999 844 Size: 2155 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3531 1394 Size: 429 1708 3507 Fragments arranged by size: 3507 1708 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4139 4313 65 Size: 1183 2891 174 1396 Fragments arranged by size: 2891 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4288 4475 1700 Size: 110 2478 187 2869 Fragments arranged by size: 2869 2478 187 110 BsrGI T'GTAC_A Cuts at: 96 2770 96 Size: 2674 2970 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5644 BssSI C'ACGA_G Cuts at: 3704 4716 3704 Size: 1012 4632 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5644 BstBI TT'CG_AA Cuts at: 4448 4448 Size: 5644 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5644 BstYI r'GATC_y Cuts at: 1972 2860 2974 3341 3726 3743 5195 5281 5293 Size: 888 114 367 385 17 1452 86 12 Cuts at: 5293 5639 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 888 385 367 346 114 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2151 513 Size: 552 939 147 4006 Fragments arranged by size: 4006 939 552 147 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4905 Fragments arranged by size: 4905 683 56 BtsI GCAGTG_nn' Cuts at: 3160 3954 3974 3160 Size: 794 20 4830 Fragments arranged by size: 4830 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5644 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5609 DraI TTT'AAA Cuts at: 2290 2948 2290 Size: 658 4986 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4651 809 Size: 507 3335 1802 Fragments arranged by size: 3335 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 3091 3980 5609 Size: 54 1425 50 275 18 1261 889 1629 Cuts at: 5609 8 Size: 43 Fragments arranged by size: 1629 1425 1261 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3091 1537 Size: 275 1279 4090 Fragments arranged by size: 4090 1279 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2046 3574 1353 Size: 693 1528 3423 Fragments arranged by size: 3423 1528 693 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4231 4605 4751 387 Size: 1064 138 2642 374 146 1280 Fragments arranged by size: 2642 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2288 2594 3707 4304 5091 5359 1239 Size: 393 656 306 1113 597 787 268 1524 Fragments arranged by size: 1524 1113 787 656 597 393 306 268 EcoRI G'AATT_C Cuts at: 2328 2953 3331 2328 Size: 625 378 4641 Fragments arranged by size: 4641 625 378 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2821 2821 Size: 5644 FspI TGC'GCA Cuts at: 4150 4150 Size: 5644 HaeII r_GCGC'y Cuts at: 1678 4791 1678 Size: 3113 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2261 2293 2479 2511 4285 Size: 32 135 32 689 32 186 32 1774 Cuts at: 4285 4317 4359 4391 1373 Size: 32 42 32 2626 Fragments arranged by size: 2626 1774 689 186 135 42 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2257 2391 2988 3234 669 Size: 988 281 319 134 597 246 3079 Fragments arranged by size: 3079 988 597 319 281 246 134 HindIII A'AGCT_T Cuts at: 748 748 Size: 5644 HpaI GTT'AAC Cuts at: 2257 3234 2257 Size: 977 4667 KpnI G_GTAC'C Cuts at: 2969 2969 Size: 5644 MfeI C'AATT_G Cuts at: 2829 3243 2829 Size: 414 5230 MluI A'CGCG_T Cuts at: 5520 5520 Size: 5644 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2849 4758 4942 1305 Size: 1544 1909 184 2007 Fragments arranged by size: 2007 1909 1544 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3822 Fragments arranged by size: 3822 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2156 2538 3602 3961 4120 518 Size: 648 990 382 1064 359 159 2042 Fragments arranged by size: 2042 1064 990 648 382 359 159 MspA1I CmG'CkG Cuts at: 1606 3060 3737 4885 5130 1606 Size: 1454 677 1148 245 2120 Fragments arranged by size: 2120 1454 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 2004 2151 513 Size: 552 939 147 4006 Fragments arranged by size: 4006 939 552 147 NdeI CA'TA_TG Cuts at: 387 387 Size: 5644 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5644 NotI GC'GGCC_GC Cuts at: 3091 3091 Size: 5644 NspI r_CATG'y Cuts at: 1132 1229 2086 2345 3002 4547 1132 Size: 97 857 259 657 1545 2229 Fragments arranged by size: 2229 1545 857 657 259 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5644 PciI A'CATG_T Cuts at: 4543 4543 Size: 5644 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5644 PfoI T'CCnGG_A Cuts at: 2323 2323 Size: 5644 PmeI GTTT'AAAC Cuts at: 2948 2948 Size: 5644 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3713 3745 5226 5258 3713 Size: 32 1481 32 4099 Fragments arranged by size: 4099 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5644 PsiI TTA'TAA Cuts at: 3214 3214 Size: 5644 PstI C_TGCA'G Cuts at: 830 2575 2996 830 Size: 1745 421 3478 Fragments arranged by size: 3478 1745 421 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5644 SalI G'TCGA_C Cuts at: 1936 2986 1936 Size: 1050 4594 SbfI CC_TGCA'GG Cuts at: 2996 2996 Size: 5644 ScaI AGT'ACT Cuts at: 3892 5604 3892 Size: 1712 3932 SfcI C'TryA_G Cuts at: 826 1045 2571 2671 2868 2881 2992 4127 4808 Size: 219 1526 100 197 13 111 1135 681 Cuts at: 4808 4999 826 Size: 191 1471 Fragments arranged by size: 1526 1471 1135 681 219 197 191 111 100 13 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5644 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5644 SmaI CCC'GGG Cuts at: 1872 2971 1872 Size: 1099 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3748 4649 4911 820 Size: 197 926 1805 901 262 1553 Fragments arranged by size: 1805 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3435 493 Size: 2942 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5644 SphI G_CATG'C Cuts at: 1132 2086 3002 1132 Size: 954 916 3774 Fragments arranged by size: 3774 954 916 SspI AAT'ATT Cuts at: 5 52 2242 3568 5 Size: 47 2190 1326 2081 Fragments arranged by size: 2190 2081 1326 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5644 StyI C'CwwG_G Cuts at: 513 1065 2004 2151 2875 3083 513 Size: 552 939 147 724 208 3074 Fragments arranged by size: 3074 939 724 552 208 147 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2392 3671 3688 3841 4026 4471 325 Size: 1255 812 1279 17 153 185 445 1498 Fragments arranged by size: 1498 1279 1255 812 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2770 3890 5602 Size: 274 80 33 51 1443 793 1120 1712 Cuts at: 5602 96 Size: 138 Fragments arranged by size: 1712 1443 1120 793 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2769 2801 5604 5636 2769 Size: 32 2803 32 2777 Fragments arranged by size: 2803 2777 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5644 XbaI T'CTAG_A Cuts at: 2980 2980 Size: 5644 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5644 XmaI C'CCGG_G Cuts at: 1870 2969 1870 Size: 1099 4545 XmnI GAAnn'nnTTC Cuts at: 3773 3773 Size: 5644 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3452 276 Size: 53 83 186 936 1918 2468 Fragments arranged by size: 2468 1918 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI AvrII BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI BaeI BbeI BbvCI BfrBI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI