Result of FASTA (omim) for pFN21AE1123
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1123, 456 aa
  1>>>pF1KE1123 456 - 456 aa - 456 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7655+/-0.000484; mu= 15.7932+/- 0.030
 mean_var=93.6224+/-18.498, 0's: 0 Z-trim(110.1): 107  B-trim: 68 in 1/49
 Lambda= 0.132551
 statistics sampled from 18285 (18384) to 18285 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.571), E-opt: 0.2 (0.216), width:  16
 Scan time:  8.680

The best scores are:                                      opt bits E(85289)
NP_003698 (OMIM: 603449) ruvB-like 1 isoform 1 [Ho ( 456) 2903 566.1 6.9e-161
XP_016862845 (OMIM: 603449) PREDICTED: ruvB-like 1 ( 467) 2592 506.6 5.6e-143
XP_005247898 (OMIM: 603449) PREDICTED: ruvB-like 1 ( 396) 2536 495.9 8.3e-140
NP_001306013 (OMIM: 603449) ruvB-like 1 isoform 2  ( 386) 2405 470.8 2.8e-132
XP_011511551 (OMIM: 603449) PREDICTED: ruvB-like 1 ( 375) 2401 470.0 4.7e-132
XP_016862846 (OMIM: 603449) PREDICTED: ruvB-like 1 ( 407) 2225 436.4 6.8e-122
XP_011511550 (OMIM: 603449) PREDICTED: ruvB-like 1 ( 393) 2172 426.2 7.4e-119
NP_001306015 (OMIM: 603449) ruvB-like 1 isoform 3  ( 315) 2034 399.8 5.5e-111
NP_006657 (OMIM: 604788) ruvB-like 2 isoform 1 [Ho ( 463)  747 153.8 9.1e-37
NP_001308119 (OMIM: 604788) ruvB-like 2 isoform 2  ( 429)  639 133.1 1.4e-30
XP_011524632 (OMIM: 604788) PREDICTED: ruvB-like 2 ( 418)  618 129.1 2.2e-29
NP_001308120 (OMIM: 604788) ruvB-like 2 isoform 3  ( 418)  618 129.1 2.2e-29


>>NP_003698 (OMIM: 603449) ruvB-like 1 isoform 1 [Homo s  (456 aa)
 initn: 2903 init1: 2903 opt: 2903  Z-score: 3009.4  bits: 566.1 E(85289): 6.9e-161
Smith-Waterman score: 2903; 100.0% identity (100.0% similar) in 456 aa overlap (1-456:1-456)

               10        20        30        40        50        60
pF1KE1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN
              370       380       390       400       410       420

              430       440       450      
pF1KE1 GKDSIEKEHVEEISELFYDAKSSAKILADQQDKYMK
       ::::::::::::::::::::::::::::::::::::
NP_003 GKDSIEKEHVEEISELFYDAKSSAKILADQQDKYMK
              430       440       450      

>>XP_016862845 (OMIM: 603449) PREDICTED: ruvB-like 1 iso  (467 aa)
 initn: 2582 init1: 2582 opt: 2592  Z-score: 2687.8  bits: 506.6 E(85289): 5.6e-143
Smith-Waterman score: 2592; 92.4% identity (95.1% similar) in 446 aa overlap (1-446:1-440)

               10        20        30        40        50        60
pF1KE1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN
       ::::::::::::::::::::::::::::::::::::::::::::   ..    :.:... 
XP_016 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRSHDSM----NMLVQLI
              370       380       390       400           410      

              430       440       450                       
pF1KE1 GKDSIEKEHVEEISELFYDAKSSAKILADQQDKYMK                 
        : .  : :.  :    :: ..  ..                           
XP_016 WKPAAFKYHL--IVSTQYDDSAPHRVGDCTQGILKLKSRPWKLPGVGSGHTWK
        420         430       440       450       460       

>>XP_005247898 (OMIM: 603449) PREDICTED: ruvB-like 1 iso  (396 aa)
 initn: 2536 init1: 2536 opt: 2536  Z-score: 2631.0  bits: 495.9 E(85289): 8.3e-140
Smith-Waterman score: 2536; 100.0% identity (100.0% similar) in 396 aa overlap (61-456:1-396)

               40        50        60        70        80        90
pF1KE1 LAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK
                                     ::::::::::::::::::::::::::::::
XP_005                               MAGRAVLLAGPPGTGKTALALAIAQELGSK
                                             10        20        30

              100       110       120       130       140       150
pF1KE1 VPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGY
               40        50        60        70        80        90

              160       170       180       190       200       210
pF1KE1 GKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYA
              100       110       120       130       140       150

              220       230       240       250       260       270
pF1KE1 TEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTE
              160       170       180       190       200       210

              280       290       300       310       320       330
pF1KE1 ITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFA
              220       230       240       250       260       270

              340       350       360       370       380       390
pF1KE1 SNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEA
              280       290       300       310       320       330

              400       410       420       430       440       450
pF1KE1 LNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQ
              340       350       360       370       380       390

             
pF1KE1 QDKYMK
       ::::::
XP_005 QDKYMK
             

>>NP_001306013 (OMIM: 603449) ruvB-like 1 isoform 2 [Hom  (386 aa)
 initn: 2405 init1: 2405 opt: 2405  Z-score: 2495.7  bits: 470.8 E(85289): 2.8e-132
Smith-Waterman score: 2405; 98.7% identity (99.5% similar) in 379 aa overlap (1-379:1-379)

               10        20        30        40        50        60
pF1KE1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN
       :::::::::::::...  :                                         
NP_001 IRTMLYTPQEMKQVLSAAADPGQLAC                                  
              370       380                                        

>>XP_011511551 (OMIM: 603449) PREDICTED: ruvB-like 1 iso  (375 aa)
 initn: 2401 init1: 2401 opt: 2401  Z-score: 2491.8  bits: 470.0 E(85289): 4.7e-132
Smith-Waterman score: 2401; 99.7% identity (100.0% similar) in 374 aa overlap (1-374:1-374)

               10        20        30        40        50        60
pF1KE1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN
       :::::::::::::.                                              
XP_011 IRTMLYTPQEMKQVP                                             
              370                                                  

>>XP_016862846 (OMIM: 603449) PREDICTED: ruvB-like 1 iso  (407 aa)
 initn: 2215 init1: 2215 opt: 2225  Z-score: 2309.4  bits: 436.4 E(85289): 6.8e-122
Smith-Waterman score: 2225; 91.2% identity (94.3% similar) in 386 aa overlap (61-446:1-380)

               40        50        60        70        80        90
pF1KE1 LAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK
                                     ::::::::::::::::::::::::::::::
XP_016                               MAGRAVLLAGPPGTGKTALALAIAQELGSK
                                             10        20        30

              100       110       120       130       140       150
pF1KE1 VPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGY
               40        50        60        70        80        90

              160       170       180       190       200       210
pF1KE1 GKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYA
              100       110       120       130       140       150

              220       230       240       250       260       270
pF1KE1 TEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTE
              160       170       180       190       200       210

              280       290       300       310       320       330
pF1KE1 ITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFA
              220       230       240       250       260       270

              340       350       360       370       380       390
pF1KE1 SNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEA
              280       290       300       310       320       330

              400       410       420       430       440       450
pF1KE1 LNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQ
       ::::::::::::::   ..    :.:...  : .  : :.  :    :: ..  ..    
XP_016 LNHLGEIGTKTTLRSHDSM----NMLVQLIWKPAAFKYHL--IVSTQYDDSAPHRVGDCT
              340           350       360         370       380    

                              
pF1KE1 QDKYMK                 
                              
XP_016 QGILKLKSRPWKLPGVGSGHTWK
          390       400       

>>XP_011511550 (OMIM: 603449) PREDICTED: ruvB-like 1 iso  (393 aa)
 initn: 2172 init1: 2172 opt: 2172  Z-score: 2254.8  bits: 426.2 E(85289): 7.4e-119
Smith-Waterman score: 2172; 100.0% identity (100.0% similar) in 339 aa overlap (1-339:1-339)

               10        20        30        40        50        60
pF1KE1 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMI
       :::::::::::::::::::::::::::::::::::::::                     
XP_011 VDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRYAVLDSKEIWVCGFIAPNCLS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKIN
                                                                   
XP_011 GGSSLMAEFGQLLNEALRTSHPLTASLLTFWTE                           
              370       380       390                              

>>NP_001306015 (OMIM: 603449) ruvB-like 1 isoform 3 [Hom  (315 aa)
 initn: 2034 init1: 2034 opt: 2034  Z-score: 2113.5  bits: 399.8 E(85289): 5.5e-111
Smith-Waterman score: 2034; 99.7% identity (100.0% similar) in 314 aa overlap (61-374:1-314)

               40        50        60        70        80        90
pF1KE1 LAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSK
                                     ::::::::::::::::::::::::::::::
NP_001                               MAGRAVLLAGPPGTGKTALALAIAQELGSK
                                             10        20        30

              100       110       120       130       140       150
pF1KE1 VPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGY
               40        50        60        70        80        90

              160       170       180       190       200       210
pF1KE1 GKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYA
              100       110       120       130       140       150

              220       230       240       250       260       270
pF1KE1 TEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTE
              160       170       180       190       200       210

              280       290       300       310       320       330
pF1KE1 ITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFA
              220       230       240       250       260       270

              340       350       360       370       380       390
pF1KE1 SNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEA
       :::::::::::::::::::::::::::::::::::::::::::.                
NP_001 SNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQVP               
              280       290       300       310                    

              400       410       420       430       440       450
pF1KE1 LNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQ

>>NP_006657 (OMIM: 604788) ruvB-like 2 isoform 1 [Homo s  (463 aa)
 initn: 1229 init1: 483 opt: 747  Z-score: 781.1  bits: 153.8 E(85289): 9.1e-37
Smith-Waterman score: 1267; 43.0% identity (73.9% similar) in 456 aa overlap (2-455:9-451)

                      10        20        30        40        50   
pF1KE1        MKIEEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIV
               :. :....:. .::..:::..:::::..   .::..:.:::  ::.: ::..
NP_006 MATVTATTKVPEIRDVTRIERIGAHSHIRGLGLDDALEPRQASQGMVGQLAARRAAGVVL
               10        20        30        40        50        60

            60        70        80        90       100       110   
pF1KE1 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLM
       :.:.  :.::::::.:: :::::::.:...:: ::  .::  ..:::..: :..:::.: 
NP_006 EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALT
               70        80        90       100       110       120

           120       130       140       150       160       170   
pF1KE1 ENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLD
       . :::.::.::::  :. ::::.:.   . . :  : :. ...  . :::..      : 
NP_006 QAFRRSIGVRIKEETEIIEGEVVEI---QIDRPATGTGSKVGK--LTLKTTEMETIYDLG
              130       140          150       160         170     

           180       190       200       210         220       230 
pF1KE1 PSIFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEE--YVPLPKGDVHKK
        ...::: :..:.::::: :.  .: ... ::  : : ..:  . .  .:  : :...:.
NP_006 TKMIESLTKDKVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKR
         180       190       200       210       220       230     

             240       250       260       270       280       290 
pF1KE1 KEIIQDVTLHDLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGI
       ::... :.::..:: :.: ::   .:.    :..    :: ...: .::  : .. ..: 
NP_006 KEVVHTVSLHEIDVINSRTQG---FLA----LFSGDTGEIKSEVREQINAKVAEWREEGK
         240       250              260       270       280        

             300       310       320       330       340       350 
pF1KE1 AELVPGVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIP
       ::..:::::.::::::::: :..:.:::::..::..:.:.:::   :::: .  ::::::
NP_006 AEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGT-SYQSPHGIP
      290       300       310       320       330        340       

             360       370       380       390       400       410 
pF1KE1 LDLLDRVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLT
       .:::::..:. :  :. .. :::..:: . : ...::.: . : .:: .:.:::..::.:
NP_006 IDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLIT
       350       360       370       380       390       400       

             420       430       440       450                 
pF1KE1 PANLLAKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDKYMK           
        :.:. .      .. . ....  :: : . :.. . . :: ..            
NP_006 AASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS
       410       420       430       440       450       460   

>>NP_001308119 (OMIM: 604788) ruvB-like 2 isoform 2 [Hom  (429 aa)
 initn: 1152 init1: 406 opt: 639  Z-score: 669.9  bits: 133.1 E(85289): 1.4e-30
Smith-Waterman score: 1159; 43.2% identity (73.1% similar) in 424 aa overlap (34-455:7-417)

            10        20        30        40        50        60   
pF1KE1 EEVKSTTKTQRIASHSHVKGLGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAG
                                     ::..:.:::  ::.: ::..:.:.  :.::
NP_001                         MCASHPQASQGMVGQLAARRAAGVVLEMIREGKIAG
                                       10        20        30      

            70        80        90       100       110       120   
pF1KE1 RAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLR
       ::::.:: :::::::.:...:: ::  .::  ..:::..: :..:::.: . :::.::.:
NP_001 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR
         40        50        60        70        80        90      

           130       140       150       160       170       180   
pF1KE1 IKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKE
       :::  :. ::::.:.   . . :  : :. ....   :::..      :  ...::: :.
NP_001 IKEETEIIEGEVVEI---QIDRPATGTGSKVGKLT--LKTTEMETIYDLGTKMIESLTKD
        100       110          120         130       140       150 

           190       200       210         220       230       240 
pF1KE1 RVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEE--YVPLPKGDVHKKKEIIQDVTLH
       .:.::::: :.  .: ... ::  : : ..:  . .  .:  : :...:.::... :.::
NP_001 KVQAGDVITIDKATGKISKLGRSFTRARDYDAMGSQTKFVQCPDGELQKRKEVVHTVSLH
             160       170       180       190       200       210 

             250       260       270       280       290       300 
pF1KE1 DLDVANARPQGGQDILSMMGQLMKPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFV
       ..:: :.: ::   .:.    :..    :: ...: .::  : .. ..: ::..:::::.
NP_001 EIDVINSRTQG---FLA----LFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFI
             220              230       240       250       260    

             310       320       330       340       350       360 
pF1KE1 DEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMII
       ::::::::: :..:.:::::..::..:.:.:::   :::: .  ::::::.:::::..:.
NP_001 DEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGT-SYQSPHGIPIDLLDRLLIV
          270       280       290       300        310       320   

             370       380       390       400       410       420 
pF1KE1 RTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKING
        :  :. .. :::..:: . : ...::.: . : .:: .:.:::..::.: :.:. .   
NP_001 STTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRK
           330       340       350       360       370       380   

             430       440       450                 
pF1KE1 KDSIEKEHVEEISELFYDAKSSAKILADQQDKYMK           
          .. . ....  :: : . :.. . . :: ..            
NP_001 GTEVQVDDIKRVYSLFLDESRSTQYMKEYQDAFLFNELKGETMDTS
           390       400       410       420         




456 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:38:39 2016 done: Mon Nov  7 01:38:40 2016
 Total Scan time:  8.680 Total Display time:  0.050

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com