FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1409, 468 aa 1>>>pF1KE1409 468 - 468 aa - 468 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7064+/-0.000342; mu= 13.6283+/- 0.021 mean_var=152.5965+/-30.483, 0's: 0 Z-trim(120.2): 57 B-trim: 516 in 2/49 Lambda= 0.103825 statistics sampled from 34982 (35039) to 34982 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.75), E-opt: 0.2 (0.411), width: 16 Scan time: 9.840 The best scores are: opt bits E(85289) NP_003835 (OMIM: 603611) tumor necrosis factor rec ( 468) 3235 496.2 7.9e-140 NP_671716 (OMIM: 275355,603612) tumor necrosis fac ( 411) 1333 211.2 4.2e-54 XP_016869433 (OMIM: 275355,603612) PREDICTED: tumo ( 375) 713 118.3 3.6e-26 NP_003833 (OMIM: 275355,603612) tumor necrosis fac ( 440) 713 118.4 4e-26 NP_003832 (OMIM: 603613) tumor necrosis factor rec ( 259) 644 107.8 3.6e-23 NP_003831 (OMIM: 603614) tumor necrosis factor rec ( 386) 632 106.2 1.6e-22 NP_001307548 (OMIM: 134637,601859) tumor necrosis ( 197) 256 49.6 9.2e-06 NP_690611 (OMIM: 134637,601859) tumor necrosis fac ( 220) 256 49.7 9.9e-06 NP_000034 (OMIM: 134637,601859) tumor necrosis fac ( 335) 256 49.8 1.3e-05 XP_011538069 (OMIM: 134637,601859) PREDICTED: tumo ( 350) 256 49.9 1.4e-05 XP_006717882 (OMIM: 134637,601859) PREDICTED: tumo ( 362) 256 49.9 1.4e-05 XP_011538068 (OMIM: 134637,601859) PREDICTED: tumo ( 362) 256 49.9 1.4e-05 XP_011538066 (OMIM: 134637,601859) PREDICTED: tumo ( 389) 256 49.9 1.5e-05 NP_690610 (OMIM: 134637,601859) tumor necrosis fac ( 314) 224 45.0 0.00035 XP_011538067 (OMIM: 134637,601859) PREDICTED: tumo ( 368) 224 45.1 0.00039 XP_006719046 (OMIM: 600979) PREDICTED: tumor necro ( 255) 216 43.7 0.0007 NP_001257916 (OMIM: 600979) tumor necrosis factor ( 416) 218 44.2 0.0008 XP_005253745 (OMIM: 600979) PREDICTED: tumor necro ( 399) 216 43.9 0.00095 NP_002333 (OMIM: 600979) tumor necrosis factor rec ( 435) 216 44.0 0.001 NP_001057 (OMIM: 191191) tumor necrosis factor rec ( 461) 206 42.5 0.003 XP_011540365 (OMIM: 191191) PREDICTED: tumor necro ( 462) 206 42.5 0.003 XP_011540362 (OMIM: 191191) PREDICTED: tumor necro ( 484) 206 42.5 0.0031 XP_016857700 (OMIM: 191191) PREDICTED: tumor necro ( 491) 206 42.5 0.0031 XP_016857701 (OMIM: 191191) PREDICTED: tumor necro ( 440) 203 42.0 0.0039 XP_016857702 (OMIM: 191191) PREDICTED: tumor necro ( 440) 203 42.0 0.0039 >>NP_003835 (OMIM: 603611) tumor necrosis factor recepto (468 aa) initn: 3235 init1: 3235 opt: 3235 Z-score: 2631.3 bits: 496.2 E(85289): 7.9e-140 Smith-Waterman score: 3235; 99.8% identity (100.0% similar) in 468 aa overlap (1-468:1-468) 10 20 30 40 50 60 pF1KE1 MAPPPARVHLGAFLAVTPNPGSAASGTEAAAATPSKVWGSSAGRIEPRGGGRGALPTSMG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MAPPPARVHLGAFLAVTPNPGSAASGTEAAAATPSKVWGSSAGRIEPRGGGRGALPTSMG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 QHGPSARARAGRAPGPRPAREASPRLRVHKTFKFVVVGVLLQVVPSSAATIKLHDQSIGT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 QHGPSARARAGRAPGPRPAREASPRLRVHKTFKFVVVGVLLQVVPSSAATIKLHDQSIGT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 QQWEHSPLGELCPPGSHRSEHPGACNRCTEGVGYTNASNNLFACLPCTACKSDEEERSPC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 QQWEHSPLGELCPPGSHRSEHPGACNRCTEGVGYTNASNNLFACLPCTACKSDEEERSPC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 TTTRNTACQCKPGTFRNDNSAEMCRKCSRGCPRGMVKVKDCTPWSDIECVHKESGNGHNI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 TTTRNTACQCKPGTFRNDNSAEMCRKCSRGCPRGMVKVKDCTPWSDIECVHKESGNGHNI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 WVILVVTLVVPLLLVAVLIVCCCIGSGCGGDPKCMDRVCFWRLGLLRGPGAEDNAHNEIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 WVILVVTLVVPLLLVAVLIVCCCIGSGCGGDPKCMDRVCFWRLGLLRGPGAEDNAHNEIL 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 SNADSLSTFVSEQQMESQEPADLTGVTVQSPGEAQCLLGPAEAEGSQRRRLLVPANGADP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 SNADSLSTFVSEQQMESQEPADLTGVTVQSPGEAQCLLGPAEAEGSQRRRLLVPANGADP 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 TETLMLFFDKFANIVPFDSWDQLMRQLDLTKNEIDVVRAGTAGPGDALYAMLMKWVNKTG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 TETLMLFFDKFANIVPFDSWDQLMRQLDLTKNEIDVVRAGTAGPGDALYAMLMKWVNKTG 370 380 390 400 410 420 430 440 450 460 pF1KE1 RNASIHTLLDALERMEERHAKEKIQDLLVDSGKFIYLEDGTGSAVSLE ::::::::::::::::::::.::::::::::::::::::::::::::: NP_003 RNASIHTLLDALERMEERHAREKIQDLLVDSGKFIYLEDGTGSAVSLE 430 440 450 460 >>NP_671716 (OMIM: 275355,603612) tumor necrosis factor (411 aa) initn: 1334 init1: 648 opt: 1333 Z-score: 1092.3 bits: 211.2 E(85289): 4.2e-54 Smith-Waterman score: 1374; 56.1% identity (71.5% similar) in 417 aa overlap (60-466:5-411) 30 40 50 60 70 80 pF1KE1 AAATPSKVWGSSAGRIEPRGGGRGALPTSMGQHGPSAR-ARAGRAPGPRPAREASPRLRV ::..:.: :: ..:::: :: : : :: NP_671 MEQRGQNAPAASGARKRHGPGPREARGARPGPRV 10 20 30 90 100 110 120 130 140 pF1KE1 HKTFKFVVVGVLLQVVPSSAATIKLHD----QSIGTQQWEHSPLGELCPPGSHRSEHPGA ::. .::..::: .: . .: : .: : . :: . :: ::::: : :: NP_671 PKTLVLVVAAVLL-LVSAESALITQQDLAPQQRAAPQQKRSSPSEGLCPPGHHISEDGRD 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE1 CNRCTEGVGYTNASNNLFACLPCTACKSDEEERSPCTTTRNTACQCKPGTFRNDNSAEMC : : : :.. :.:. :: :: : : : : :::::::::.:::. ::::...: ::: NP_671 CISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMC 100 110 120 130 140 150 210 220 230 240 250 pF1KE1 RKCSRGCPRGMVKVKDCTPWSDIECVHKESGN--GHNIW-VILVVTLVV--PLLLVAVLI ::: ::::::::: :::::::::::::::: : .. :.:.:.. : :: :: NP_671 RKCRTGCPRGMVKVGDCTPWSDIECVHKESGIIIGVTVAAVVLIVAVFVCKSLLWKKVLP 160 170 180 190 200 210 260 270 280 290 300 310 pF1KE1 VCCCIGSGCGGDPKCMDRVCFWRLGLLRGPGAEDNAHNEILSNADSLSTFVSEQQMESQE : :: ::::. .:: . ::::::. :::.: . : : ::.:: :: NP_671 YLKGICSGGGGDPERVDRSS-------QRPGAEDNVLNEIVSILQ--PTQVPEQEMEVQE 220 230 240 250 260 320 330 340 350 360 370 pF1KE1 PADLTGVTVQSPGEAQCLLGPAEAEGSQRRRLLVPANGADPTETLMLFFDKFANIVPFDS ::. :::.. ::::.. :: ::::: ::::::::::: .:::::: :: ::..::::: NP_671 PAEPTGVNMLSPGESEHLLEPAEAERSQRRRLLVPANEGDPTETLRQCFDDFADLVPFDS 270 280 290 300 310 320 380 390 400 410 420 430 pF1KE1 WDQLMRQLDLTKNEIDVVRAGTAGPGDALYAMLMKWVNKTGRNASIHTLLDALERMEERH :. :::.: : ::: :..: .:: :.::.::.::::::::.::.:::::::: . :: NP_671 WEPLMRKLGLMDNEIKVAKAEAAGHRDTLYTMLIKWVNKTGRDASVHTLLDALETLGERL 330 340 350 360 370 380 440 450 460 pF1KE1 AKEKIQDLLVDSGKFIYLEDGTGSAVSLE ::.::.: :..::::.::: .. ::.: NP_671 AKQKIEDHLLSSGKFMYLEGNADSAMS 390 400 410 >>XP_016869433 (OMIM: 275355,603612) PREDICTED: tumor ne (375 aa) initn: 1182 init1: 648 opt: 713 Z-score: 590.9 bits: 118.3 E(85289): 3.6e-26 Smith-Waterman score: 1167; 53.6% identity (68.9% similar) in 366 aa overlap (135-466:19-375) 110 120 130 140 150 160 pF1KE1 PSSAATIKLHDQSIGTQQWEHSPLGELCPPGSHRSEHPGACNRCTEGVGYTNASNNLFAC : : :: : : : :.. :.:. : XP_016 MDDVWGMRTIEAPNSTAQGHHISEDGRDCISCKYGQDYSTHWNDLLFC 10 20 30 40 170 180 190 200 210 220 pF1KE1 LPCTACKSDEEERSPCTTTRNTACQCKPGTFRNDNSAEMCRKCSRGCPRGMVKVKDCTPW : :: : : : : :::::::::.:::. ::::...: :::::: ::::::::: ::::: XP_016 LRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMCRKCRTGCPRGMVKVGDCTPW 50 60 70 80 90 100 230 240 250 260 pF1KE1 SDIECVHKESGNGHNIWV----------------------ILVVTLVVPLLLVAVLIVCC :::::::::::. :. : :.. . :. ..:.....:: XP_016 SDIECVHKESGTKHSGEVPAVEETVTSSPGTPASPCSLSGIIIGVTVAAVVLIVAVFVCK 110 120 130 140 150 160 270 280 290 300 310 pF1KE1 C------------IGSGCGGDPKCMDRVCFWRLGLLRGPGAEDNAHNEILSNADSLSTFV : :: ::::. .:: . ::::::. :::.: . : : XP_016 SLLWKKVLPYLKGICSGGGGDPERVDRSS-------QRPGAEDNVLNEIVSILQP--TQV 170 180 190 200 210 320 330 340 350 360 370 pF1KE1 SEQQMESQEPADLTGVTVQSPGEAQCLLGPAEAEGSQRRRLLVPANGADPTETLMLFFDK ::.:: ::::. :::.. ::::.. :: ::::: ::::::::::: .:::::: :: XP_016 PEQEMEVQEPAEPTGVNMLSPGESEHLLEPAEAERSQRRRLLVPANEGDPTETLRQCFDD 220 230 240 250 260 270 380 390 400 410 420 430 pF1KE1 FANIVPFDSWDQLMRQLDLTKNEIDVVRAGTAGPGDALYAMLMKWVNKTGRNASIHTLLD ::..::::::. :::.: : ::: :..: .:: :.::.::.::::::::.::.::::: XP_016 FADLVPFDSWEPLMRKLGLMDNEIKVAKAEAAGHRDTLYTMLIKWVNKTGRDASVHTLLD 280 290 300 310 320 330 440 450 460 pF1KE1 ALERMEERHAKEKIQDLLVDSGKFIYLEDGTGSAVSLE ::: . :: ::.::.: :..::::.::: .. ::.: XP_016 ALETLGERLAKQKIEDHLLSSGKFMYLEGNADSAMS 340 350 360 370 >>NP_003833 (OMIM: 275355,603612) tumor necrosis factor (440 aa) initn: 1381 init1: 648 opt: 713 Z-score: 590.0 bits: 118.4 E(85289): 4e-26 Smith-Waterman score: 1338; 52.0% identity (67.9% similar) in 446 aa overlap (60-466:5-440) 30 40 50 60 70 80 pF1KE1 AAATPSKVWGSSAGRIEPRGGGRGALPTSMGQHGPSAR-ARAGRAPGPRPAREASPRLRV ::..:.: :: ..:::: :: : : :: NP_003 MEQRGQNAPAASGARKRHGPGPREARGARPGPRV 10 20 30 90 100 110 120 130 140 pF1KE1 HKTFKFVVVGVLLQVVPSSAATIKLHD----QSIGTQQWEHSPLGELCPPGSHRSEHPGA ::. .::..::: .: . .: : .: : . :: . :: ::::: : :: NP_003 PKTLVLVVAAVLL-LVSAESALITQQDLAPQQRAAPQQKRSSPSEGLCPPGHHISEDGRD 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE1 CNRCTEGVGYTNASNNLFACLPCTACKSDEEERSPCTTTRNTACQCKPGTFRNDNSAEMC : : : :.. :.:. :: :: : : : : :::::::::.:::. ::::...: ::: NP_003 CISCKYGQDYSTHWNDLLFCLRCTRCDSGEVELSPCTTTRNTVCQCEEGTFREEDSPEMC 100 110 120 130 140 150 210 220 230 240 pF1KE1 RKCSRGCPRGMVKVKDCTPWSDIECVHKESGNGHNIWV---------------------- ::: ::::::::: ::::::::::::::::. :. : NP_003 RKCRTGCPRGMVKVGDCTPWSDIECVHKESGTKHSGEVPAVEETVTSSPGTPASPCSLSG 160 170 180 190 200 210 250 260 270 280 290 pF1KE1 ILVVTLVVPLLLVAVLIVCCC------------IGSGCGGDPKCMDRVCFWRLGLLRGPG :.. . :. ..:.....:: : :: ::::. .:: . :: NP_003 IIIGVTVAAVVLIVAVFVCKSLLWKKVLPYLKGICSGGGGDPERVDRSS-------QRPG 220 230 240 250 260 300 310 320 330 340 350 pF1KE1 AEDNAHNEILSNADSLSTFVSEQQMESQEPADLTGVTVQSPGEAQCLLGPAEAEGSQRRR ::::. :::.: . : : ::.:: ::::. :::.. ::::.. :: ::::: ::::: NP_003 AEDNVLNEIVSILQ--PTQVPEQEMEVQEPAEPTGVNMLSPGESEHLLEPAEAERSQRRR 270 280 290 300 310 320 360 370 380 390 400 410 pF1KE1 LLVPANGADPTETLMLFFDKFANIVPFDSWDQLMRQLDLTKNEIDVVRAGTAGPGDALYA :::::: .:::::: :: ::..::::::. :::.: : ::: :..: .:: :.::. NP_003 LLVPANEGDPTETLRQCFDDFADLVPFDSWEPLMRKLGLMDNEIKVAKAEAAGHRDTLYT 330 340 350 360 370 380 420 430 440 450 460 pF1KE1 MLMKWVNKTGRNASIHTLLDALERMEERHAKEKIQDLLVDSGKFIYLEDGTGSAVSLE ::.::::::::.::.:::::::: . :: ::.::.: :..::::.::: .. ::.: NP_003 MLIKWVNKTGRDASVHTLLDALETLGERLAKQKIEDHLLSSGKFMYLEGNADSAMS 390 400 410 420 430 440 >>NP_003832 (OMIM: 603613) tumor necrosis factor recepto (259 aa) initn: 616 init1: 490 opt: 644 Z-score: 537.1 bits: 107.8 E(85289): 3.6e-23 Smith-Waterman score: 644; 60.0% identity (80.0% similar) in 155 aa overlap (87-236:3-156) 60 70 80 90 100 110 pF1KE1 TSMGQHGPSARARAGRAPGPRPAREASPRLRVHKTFKFVVV--GVLLQVVPSSAATIKLH :. ::.::::: .::: :. ::.: . . NP_003 MARIPKTLKFVVVIVAVLLPVLAYSATTARQE 10 20 30 120 130 140 150 160 170 pF1KE1 D---QSIGTQQWEHSPLGELCPPGSHRSEHPGACNRCTEGVGYTNASNNLFACLPCTACK . :... :: .:: :: :: ::::::: :::: ::::: ::::::: .:.:::.:: NP_003 EVPQQTVAPQQQRHSFKGEECPAGSHRSEHTGACNPCTEGVDYTNASNNEPSCFPCTVCK 40 50 60 70 80 90 180 190 200 210 220 230 pF1KE1 SDEEERSPCTTTRNTACQCKPGTFRNDNSAEMCRKCSRGCPRGMVKVKDCTPWSDIECVH ::....: :: ::.:.:::: :::::.:: :::::::: :: : :.:..:: :.::.::. NP_003 SDQKHKSSCTMTRDTVCQCKEGTFRNENSPEMCRKCSR-CPSGEVQVSNCTSWDDIQCVE 100 110 120 130 140 150 240 250 260 270 280 290 pF1KE1 KESGNGHNIWVILVVTLVVPLLLVAVLIVCCCIGSGCGGDPKCMDRVCFWRLGLLRGPGA . ..: NP_003 EFGANATVETPAAEETMNTSPGTPAPAAEETMNTSPGTPAPAAEETMTTSPGTPAPAAEE 160 170 180 190 200 210 >>NP_003831 (OMIM: 603614) tumor necrosis factor recepto (386 aa) initn: 1038 init1: 517 opt: 632 Z-score: 525.2 bits: 106.2 E(85289): 1.6e-22 Smith-Waterman score: 913; 44.2% identity (57.6% similar) in 443 aa overlap (60-466:5-384) 30 40 50 60 70 80 pF1KE1 AAATPSKVWGSSAGRIEPRGGGRGALPTSMGQHGPSAR-ARAGRAPGPRPAREASPRLRV :: :.: ::::: :: : : . : : NP_003 MGLWGQSVPTASSARAGRYPGARTASGTRPWLLD 10 20 30 90 100 110 120 130 140 pF1KE1 HKTFKFVV--VGVLLQVVPSSAATIKLHD----QSIGTQQWEHSPLGELCPPGSHRSEHP : .:::: :.::: : .:: :: .: :... :: ..: : :: ::::::. NP_003 PKILKFVVFIVAVLLPVRVDSA-TIPRQDEVPQQTVAPQQQRRSLKEEECPAGSHRSEYT 40 50 60 70 80 90 150 160 170 180 190 200 pF1KE1 GACNRCTEGVGYTNASNNLFACLPCTACKSDEEERSPCTTTRNTACQCKPGTFRNDNSAE :::: ::::: :: ::::: .:: ::.::: . ..: :::::.:.:::. :.:.. :: : NP_003 GACNPCTEGVDYTIASNNLPSCLLCTVCKSGQTNKSSCTTTRDTVCQCEKGSFQDKNSPE 100 110 120 130 140 150 210 220 230 240 pF1KE1 MCRKCSRGCPRGMVKVKDCTPWSDIECVHKE--SGNGHNI------------------WV ::: : :::::::::..::: :::.: .. :..:.. .. NP_003 MCRTCRTGCPRGMVKVSNCTPRSDIKCKNESAASSTGKTPAAEETVTTILGMLASPYHYL 160 170 180 190 200 210 250 260 270 280 290 pF1KE1 ILVVTLVVPLLLVAVLIVC--------CCIGSGCGGDPKCMDRVCFWRLGL-LRGPGAED :..:.::. : .:.: . : : :: :: :. . :: : : . : ::::: NP_003 IIIVVLVIILAVVVVGFSCRKKFISYLKGICSGGGGGPERVHRVLFRRRSCPSRVPGAED 220 230 240 250 260 270 300 310 320 330 340 350 pF1KE1 NAHNEILSNADSLSTFVSEQQMESQEPADLTGVTVQSPGEAQCLLGPAEAEGSQRRRLLV ::.:: ::: : ::::....:: :.::::::. : : : :: ::::: ::::::: NP_003 NARNETLSNRYLQPTQVSEQEIQGQELAELTGVTVELPEEPQRLLEQAEAEGCQRRRLLV 280 290 300 310 320 330 360 370 380 390 400 410 pF1KE1 PANGADPTETLMLFFDKFANIVPFDSWDQLMRQLDLTKNEIDVVRAGTAGPGDALYAMLM :.: :: NP_003 PVNDAD------------------------------------------------------ 420 430 440 450 460 pF1KE1 KWVNKTGRNASIHTLLDALERMEERHAKEKIQDLLVDSGKFIYLEDGTGSAVSLE .:.: ::::: .:: :::: ::: :: : :..: :: .:::.: NP_003 --------SADISTLLDASATLEEGHAKETIQDQLVGSEKLFYEEDEAGSATSCL 340 350 360 370 380 >>NP_001307548 (OMIM: 134637,601859) tumor necrosis fact (197 aa) initn: 176 init1: 116 opt: 256 Z-score: 224.5 bits: 49.6 E(85289): 9.2e-06 Smith-Waterman score: 256; 33.6% identity (56.6% similar) in 143 aa overlap (122-254:57-188) 100 110 120 130 140 pF1KE1 FKFVVVGVLLQVVPSSAATIKLHDQSIGTQQWEHSPLGELCPPGSHRS-------EHPGA :. :.: :::: ... ..: NP_001 VTDINSKGLELRKTVTTVETQNLEGLHHDGQFCHKP----CPPGERKARDCTVNGDEPD- 30 40 50 60 70 80 150 160 170 180 190 200 pF1KE1 CNRCTEGVGYTNASNNLFACLPCTACKSDE--EERSPCTTTRNTACQCKPGTFRNDNSAE : : :: ::. .. : : : . : . :: :.:: :.:::. : :.. : NP_001 CVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSTVCE 90 100 110 120 130 140 210 220 230 240 250 260 pF1KE1 MCRKCSRGCPRGMVKVKDCTPWSDIECVHKESGNGHNI-WVILVVTLVVPLLLVAVLIVC : :.. : .:..: .:: :. .: :: :. :. :. :.. : .::.. NP_001 HCDPCTK-CEHGIIK--ECTLTSNTKC--KEEGSRSNLGWLCLLL-LPIPLIVWGNSGNK 150 160 170 180 190 270 280 290 300 310 320 pF1KE1 CCIGSGCGGDPKCMDRVCFWRLGLLRGPGAEDNAHNEILSNADSLSTFVSEQQMESQEPA NP_001 FI >>NP_690611 (OMIM: 134637,601859) tumor necrosis factor (220 aa) initn: 176 init1: 116 opt: 256 Z-score: 223.9 bits: 49.7 E(85289): 9.9e-06 Smith-Waterman score: 256; 33.6% identity (56.6% similar) in 143 aa overlap (122-254:57-188) 100 110 120 130 140 pF1KE1 FKFVVVGVLLQVVPSSAATIKLHDQSIGTQQWEHSPLGELCPPGSHRS-------EHPGA :. :.: :::: ... ..: NP_690 VTDINSKGLELRKTVTTVETQNLEGLHHDGQFCHKP----CPPGERKARDCTVNGDEPD- 30 40 50 60 70 80 150 160 170 180 190 200 pF1KE1 CNRCTEGVGYTNASNNLFACLPCTACKSDE--EERSPCTTTRNTACQCKPGTFRNDNSAE : : :: ::. .. : : : . : . :: :.:: :.:::. : :.. : NP_690 CVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSTVCE 90 100 110 120 130 140 210 220 230 240 250 260 pF1KE1 MCRKCSRGCPRGMVKVKDCTPWSDIECVHKESGNGHNI-WVILVVTLVVPLLLVAVLIVC : :.. : .:..: .:: :. .: :: :. :. :. :.. : .::.. NP_690 HCDPCTK-CEHGIIK--ECTLTSNTKC--KEEGSRSNLGWLCLLL-LPIPLIVWVKRKEV 150 160 170 180 190 270 280 290 300 310 320 pF1KE1 CCIGSGCGGDPKCMDRVCFWRLGLLRGPGAEDNAHNEILSNADSLSTFVSEQQMESQEPA NP_690 QKTCRKHRKENQGSHESPTLNPMLT 200 210 220 >>NP_000034 (OMIM: 134637,601859) tumor necrosis factor (335 aa) initn: 176 init1: 116 opt: 256 Z-score: 221.6 bits: 49.8 E(85289): 1.3e-05 Smith-Waterman score: 256; 33.6% identity (56.6% similar) in 143 aa overlap (122-254:57-188) 100 110 120 130 140 pF1KE1 FKFVVVGVLLQVVPSSAATIKLHDQSIGTQQWEHSPLGELCPPGSHRS-------EHPGA :. :.: :::: ... ..: NP_000 VTDINSKGLELRKTVTTVETQNLEGLHHDGQFCHKP----CPPGERKARDCTVNGDEPD- 30 40 50 60 70 80 150 160 170 180 190 200 pF1KE1 CNRCTEGVGYTNASNNLFACLPCTACKSDE--EERSPCTTTRNTACQCKPGTFRNDNSAE : : :: ::. .. : : : . : . :: :.:: :.:::. : :.. : NP_000 CVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSTVCE 90 100 110 120 130 140 210 220 230 240 250 260 pF1KE1 MCRKCSRGCPRGMVKVKDCTPWSDIECVHKESGNGHNI-WVILVVTLVVPLLLVAVLIVC : :.. : .:..: .:: :. .: :: :. :. :. :.. : .::.. NP_000 HCDPCTK-CEHGIIK--ECTLTSNTKC--KEEGSRSNLGWLCLLL-LPIPLIVWVKRKEV 150 160 170 180 190 270 280 290 300 310 320 pF1KE1 CCIGSGCGGDPKCMDRVCFWRLGLLRGPGAEDNAHNEILSNADSLSTFVSEQQMESQEPA NP_000 QKTCRKHRKENQGSHESPTLNPETVAINLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVN 200 210 220 230 240 250 >>XP_011538069 (OMIM: 134637,601859) PREDICTED: tumor ne (350 aa) initn: 176 init1: 116 opt: 256 Z-score: 221.3 bits: 49.9 E(85289): 1.4e-05 Smith-Waterman score: 256; 33.6% identity (56.6% similar) in 143 aa overlap (122-254:72-203) 100 110 120 130 140 pF1KE1 FKFVVVGVLLQVVPSSAATIKLHDQSIGTQQWEHSPLGELCPPGSHRS-------EHPGA :. :.: :::: ... ..: XP_011 VTDINSKGLELRKTVTTVETQNLEGLHHDGQFCHKP----CPPGERKARDCTVNGDEPD- 50 60 70 80 90 150 160 170 180 190 200 pF1KE1 CNRCTEGVGYTNASNNLFACLPCTACKSDE--EERSPCTTTRNTACQCKPGTFRNDNSAE : : :: ::. .. : : : . : . :: :.:: :.:::. : :.. : XP_011 CVPCQEGKEYTDKAHFSSKCRRCRLCDEGHGLEVEINCTRTQNTKCRCKPNFFCNSTVCE 100 110 120 130 140 150 210 220 230 240 250 260 pF1KE1 MCRKCSRGCPRGMVKVKDCTPWSDIECVHKESGNGHNI-WVILVVTLVVPLLLVAVLIVC : :.. : .:..: .:: :. .: :: :. :. :. :.. : .::.. XP_011 HCDPCTK-CEHGIIK--ECTLTSNTKC--KEEGSRSNLGWLCLLL-LPIPLIVWVKRKEV 160 170 180 190 200 210 270 280 290 300 310 320 pF1KE1 CCIGSGCGGDPKCMDRVCFWRLGLLRGPGAEDNAHNEILSNADSLSTFVSEQQMESQEPA XP_011 QKTCRKHRKENQGSHESPTLNPETVAINLSDVDLSKYITTIAGVMTLSQVKGFVRKNGVN 220 230 240 250 260 270 468 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:39:12 2016 done: Mon Nov 7 01:39:14 2016 Total Scan time: 9.840 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]