Result of FASTA (ccds) for pFN21AE1325
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1325, 502 aa
  1>>>pF1KE1325 502 - 502 aa - 502 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 13.9535+/-0.0012; mu= -16.1693+/- 0.073
 mean_var=771.2169+/-156.985, 0's: 0 Z-trim(118.2): 87  B-trim: 0 in 0/55
 Lambda= 0.046183
 statistics sampled from 19020 (19103) to 19020 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.826), E-opt: 0.2 (0.587), width:  16
 Scan time:  3.780

The best scores are:                                      opt bits E(32554)
CCDS14303.1 WAS gene_id:7454|Hs108|chrX            ( 502) 3619 256.0 7.2e-68
CCDS34743.1 WASL gene_id:8976|Hs108|chr7           ( 505)  863 72.3 1.4e-12


>>CCDS14303.1 WAS gene_id:7454|Hs108|chrX                 (502 aa)
 initn: 3619 init1: 3619 opt: 3619  Z-score: 1331.9  bits: 256.0 E(32554): 7.2e-68
Smith-Waterman score: 3619; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502)

               10        20        30        40        50        60
pF1KE1 MSGGPMGGRPGGRGAPAVQQNIPSTLLQDHENQRLFEMLGRKCLTLATAVVQLYLALPPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MSGGPMGGRPGGRGAPAVQQNIPSTLLQDHENQRLFEMLGRKCLTLATAVVQLYLALPPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 AEHWTKEHCGAVCFVKDNPQKSYFIRLYGLQAGRLLWEQELYSQLVYSTPTPFFHTFAGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 AEHWTKEHCGAVCFVKDNPQKSYFIRLYGLQAGRLLWEQELYSQLVYSTPTPFFHTFAGD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DCQAGLNFADEDEAQAFRALVQEKIQKRNQRQSGDRRQLPPPPTPANEERRGGLPPLPLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DCQAGLNFADEDEAQAFRALVQEKIQKRNQRQSGDRRQLPPPPTPANEERRGGLPPLPLH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 PGGDQGGPPVGPLSLGLATVDIQNPDITSSRYRGLPAPGPSPADKKRSGKKKISKADIGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PGGDQGGPPVGPLSLGLATVDIQNPDITSSRYRGLPAPGPSPADKKRSGKKKISKADIGA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 PSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDAETSKLIYDFIEDQGGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDAETSKLIYDFIEDQGGL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 EAVRQEMRRQEPLPPPPPPSRGGNQLPRPPIVGGNKGRSGPLPPVPLGIAPPPPTPRGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 EAVRQEMRRQEPLPPPPPPSRGGNQLPRPPIVGGNKGRSGPLPPVPLGIAPPPPTPRGPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 PPGRGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPPPPPSSGNGPAPPPLPPALV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PPGRGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPPPPPPPPPSSGNGPAPPPLPPALV
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE1 PAGGLAPGGGRGALLDQIRQGIQLNKTPGAPESSALQPPPQSSEGLVGALMHVMQKRSRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PAGGLAPGGGRGALLDQIRQGIQLNKTPGAPESSALQPPPQSSEGLVGALMHVMQKRSRA
              430       440       450       460       470       480

              490       500  
pF1KE1 IHSSDEGEDQAGDEDEDDEWDD
       ::::::::::::::::::::::
CCDS14 IHSSDEGEDQAGDEDEDDEWDD
              490       500  

>>CCDS34743.1 WASL gene_id:8976|Hs108|chr7                (505 aa)
 initn: 1526 init1: 606 opt: 863  Z-score: 339.5  bits: 72.3 E(32554): 1.4e-12
Smith-Waterman score: 1546; 48.3% identity (66.6% similar) in 530 aa overlap (16-498:11-499)

               10        20        30        40        50        60
pF1KE1 MSGGPMGGRPGGRGAPAVQQNIPSTLLQDHENQRLFEMLGRKCLTLATAVVQLYLALPPG
                      :    :. : ::  .::. :: .::.::.:...:::::: :    
CCDS34      MSSVQQQPPPPRRVTNVGSLLLTPQENESLFTFLGKKCVTMSSAVVQLYAA--DR
                    10        20        30        40        50     

               70        80        90       100       110       120
pF1KE1 AEHWTKEHCGAVCFVKDNPQKSYFIRLYGLQAGRLLWEQELYSQLVYSTPTPFFHTFAGD
          :.:.  :..:.::::::.:::.:.. .. :.::::::::...::..:  .:::::::
CCDS34 NCMWSKKCSGVACLVKDNPQRSYFLRIFDIKDGKLLWEQELYNNFVYNSPRGYFHTFAGD
            60        70        80        90       100       110   

              130       140       150       160       170       180
pF1KE1 DCQAGLNFADEDEAQAFRALVQEKIQKRNQRQSGDRRQLPPPPTPANEERRGGLPPLPLH
        ::..::::.:.::. ::  : . . .: ::.:  ::.                      
CCDS34 TCQVALNFANEEEAKKFRKAVTDLLGRR-QRKSEKRRD----------------------
           120       130       140        150                      

              190       200       210       220       230          
pF1KE1 PGGDQGGPPVGPLSLGLATVDIQNPDITSSRYRGLPAPGPSPADKKRSGK---KKISKAD
              :: :: .: .:::::.::.::..:. :  . . : . .:..::   :...:::
CCDS34 -------PPNGP-NLPMATVDIKNPEITTNRFYGPQVNNISHTKEKKKGKAKKKRLTKAD
                      160       170       180       190       200  

       240       250       260       270       280       290       
pF1KE1 IGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDAETSKLIYDFIEDQ
       ::.::.:.:..::::::..:::.:::::.:..::.  ::::::: : ::::.::::::  
CCDS34 IGTPSNFQHIGHVGWDPNTGFDLNNLDPELKNLFDMCGISEAQLKDRETSKVIYDFIEKT
            210       220       230       240       250       260  

       300       310       320       330             340           
pF1KE1 GGLEAVRQEMRRQEPLPPPPPPSRGGNQLPRPPIVGGN------KGRSGPLPP---VPLG
       ::.:::..:.::: :  :::::::::   : ::  ...      .::..: ::   .: .
CCDS34 GGVEAVKNELRRQAP--PPPPPSRGGPPPPPPPPHNSGPPPPPARGRGAPPPPPSRAPTA
            270         280       290       300       310       320

      350            360       370        380        390       400 
pF1KE1 IAPPPPTPRG-----PPPPGRGGPPPPPP-PATGRSGPLPPPPPGAG-GPPMPPPPPPPP
         ::::  :      ::::.:  :::::  :... ::: ::::   : ::  ::::::::
CCDS34 APPPPPPSRPSVAVPPPPPNRMYPPPPPALPSSAPSGPPPPPPSVLGVGPVAPPPPPPPP
              330       340       350       360       370       380

             410           420                               430   
pF1KE1 PPPSSGNGPAPPPLPPA----LVP--AGGLAP-------GG---------------GRGA
       :::    :: :::  :.     ::  ::. :        :.               :: :
CCDS34 PPP----GPPPPPGLPSDGDHQVPTTAGNKAALLDQIREGAQLKKVEQNSRPVSCSGRDA
                  390       400       410       420       430      

           440       450       460       470       480       490   
pF1KE1 LLDQIRQGIQLNKTPGAPESSALQPPPQSSEGLVGALMHVMQKRSRAIHSSDEGEDQAGD
       :::::::::::...  . ::.   : :  . :.:::::.::::::.::::::: ::.  .
CCDS34 LLDQIRQGIQLKSVADGQESTP--PTPAPTSGIVGALMEVMQKRSKAIHSSDEDEDEDDE
        440       450         460       470       480       490    

           500    
pF1KE1 EDEDDEWDD  
       :: .:      
CCDS34 EDFEDDDEWED
          500     




502 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:39:48 2016 done: Mon Nov  7 01:39:49 2016
 Total Scan time:  3.780 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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