Result of FASTA (omim) for
pFN21AE1419
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE1419, 277 aa
1>>>pF1KE1419 277 - 277 aa - 277 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2627+/-0.000354; mu= 11.6605+/- 0.022
mean_var=125.4236+/-24.635, 0's: 0 Z-trim(119.0): 113 B-trim: 145 in 1/48
Lambda= 0.114521
statistics sampled from 32410 (32543) to 32410 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.382), width: 16
Scan time: 7.410
The best scores are: opt bits E(85289)
NP_001241 (OMIM: 109535,606843) tumor necrosis fac ( 277) 1987 339.0 5.9e-93
NP_001309350 (OMIM: 109535,606843) tumor necrosis ( 281) 1964 335.2 8.3e-92
XP_016883626 (OMIM: 109535,606843) PREDICTED: tumo ( 222) 1561 268.5 7.7e-72
NP_001289682 (OMIM: 109535,606843) tumor necrosis ( 237) 1390 240.3 2.6e-63
XP_016883624 (OMIM: 109535,606843) PREDICTED: tumo ( 323) 1390 240.4 3.2e-63
NP_690593 (OMIM: 109535,606843) tumor necrosis fac ( 203) 1246 216.4 3.4e-56
XP_016883625 (OMIM: 109535,606843) PREDICTED: tumo ( 289) 1246 216.6 4.3e-56
XP_011527411 (OMIM: 109535,606843) PREDICTED: tumo ( 166) 1021 179.2 4.5e-45
NP_001309351 (OMIM: 109535,606843) tumor necrosis ( 225) 1011 177.7 1.8e-44
XP_005260676 (OMIM: 109535,606843) PREDICTED: tumo ( 229) 1011 177.7 1.8e-44
NP_001257878 (OMIM: 174810,602080,603499,612301) t ( 263) 548 101.2 2.1e-21
NP_001257879 (OMIM: 174810,602080,603499,612301) t ( 337) 548 101.3 2.5e-21
NP_003830 (OMIM: 174810,602080,603499,612301) tumo ( 616) 548 101.6 3.9e-21
XP_011524546 (OMIM: 174810,602080,603499,612301) P ( 621) 545 101.1 5.5e-21
NP_001257880 (OMIM: 174810,602080,603499,612301) t ( 299) 537 99.5 8.1e-21
XP_016881554 (OMIM: 174810,602080,603499,612301) P ( 566) 451 85.5 2.4e-16
NP_001057 (OMIM: 191191) tumor necrosis factor rec ( 461) 429 81.8 2.6e-15
XP_011540365 (OMIM: 191191) PREDICTED: tumor necro ( 462) 429 81.8 2.6e-15
XP_011540362 (OMIM: 191191) PREDICTED: tumor necro ( 484) 429 81.8 2.7e-15
XP_016857700 (OMIM: 191191) PREDICTED: tumor necro ( 491) 429 81.8 2.7e-15
NP_001257916 (OMIM: 600979) tumor necrosis factor ( 416) 412 78.9 1.7e-14
NP_002333 (OMIM: 600979) tumor necrosis factor rec ( 435) 412 79.0 1.7e-14
XP_006719046 (OMIM: 600979) PREDICTED: tumor necro ( 255) 399 76.6 5.3e-14
XP_005253745 (OMIM: 600979) PREDICTED: tumor necro ( 399) 400 76.9 6.5e-14
XP_016857701 (OMIM: 191191) PREDICTED: tumor necro ( 440) 388 75.0 2.8e-13
XP_016857702 (OMIM: 191191) PREDICTED: tumor necro ( 440) 388 75.0 2.8e-13
NP_003811 (OMIM: 602746) tumor necrosis factor rec ( 283) 381 73.7 4.5e-13
XP_006711082 (OMIM: 602746) PREDICTED: tumor necro ( 197) 370 71.7 1.2e-12
NP_002537 (OMIM: 239000,602643) tumor necrosis fac ( 401) 370 72.0 2e-12
NP_001284534 (OMIM: 602746) tumor necrosis factor ( 184) 365 70.8 2.1e-12
NP_001265197 (OMIM: 174810,602080,603499,612301) t ( 602) 368 71.8 3.4e-12
NP_003814 (OMIM: 603361) tumor necrosis factor rec ( 300) 308 61.6 2e-09
NP_001233 (OMIM: 186711,615122) CD27 antigen precu ( 260) 300 60.2 4.5e-09
XP_016866233 (OMIM: 605732) PREDICTED: tumor necro ( 444) 281 57.3 5.8e-08
NP_055267 (OMIM: 605732) tumor necrosis factor rec ( 655) 281 57.5 7.7e-08
XP_016875723 (OMIM: 186711,615122) PREDICTED: CD27 ( 358) 267 54.9 2.5e-07
NP_002498 (OMIM: 162010) tumor necrosis factor rec ( 427) 262 54.2 5e-07
XP_016875721 (OMIM: 186711,615122) PREDICTED: CD27 ( 405) 255 53.0 1.1e-06
NP_001307548 (OMIM: 134637,601859) tumor necrosis ( 197) 234 49.2 7.1e-06
NP_690611 (OMIM: 134637,601859) tumor necrosis fac ( 220) 234 49.3 7.6e-06
NP_690610 (OMIM: 134637,601859) tumor necrosis fac ( 314) 234 49.4 9.9e-06
NP_000034 (OMIM: 134637,601859) tumor necrosis fac ( 335) 234 49.4 1e-05
XP_011538069 (OMIM: 134637,601859) PREDICTED: tumo ( 350) 234 49.5 1.1e-05
XP_011538068 (OMIM: 134637,601859) PREDICTED: tumo ( 362) 234 49.5 1.1e-05
XP_006717882 (OMIM: 134637,601859) PREDICTED: tumo ( 362) 234 49.5 1.1e-05
XP_011538067 (OMIM: 134637,601859) PREDICTED: tumo ( 368) 234 49.5 1.1e-05
XP_011538066 (OMIM: 134637,601859) PREDICTED: tumo ( 389) 234 49.5 1.2e-05
XP_016858210 (OMIM: 602746) PREDICTED: tumor necro ( 186) 215 46.1 6e-05
XP_016857721 (OMIM: 600315,615593) PREDICTED: tumo ( 277) 202 44.1 0.00035
NP_003318 (OMIM: 600315,615593) tumor necrosis fac ( 277) 202 44.1 0.00035
>>NP_001241 (OMIM: 109535,606843) tumor necrosis factor (277 aa)
initn: 1987 init1: 1987 opt: 1987 Z-score: 1789.9 bits: 339.0 E(85289): 5.9e-93
Smith-Waterman score: 1987; 100.0% identity (100.0% similar) in 277 aa overlap (1-277:1-277)
10 20 30 40 50 60
pF1KE1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQEPQEINFPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQEPQEINFPD
190 200 210 220 230 240
250 260 270
pF1KE1 DLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ
:::::::::::::::::::::::::::::::::::::
NP_001 DLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ
250 260 270
>>NP_001309350 (OMIM: 109535,606843) tumor necrosis fact (281 aa)
initn: 1686 init1: 1581 opt: 1964 Z-score: 1769.3 bits: 335.2 E(85289): 8.3e-92
Smith-Waterman score: 1964; 98.2% identity (98.6% similar) in 281 aa overlap (1-277:1-281)
10 20 30 40 50 60
pF1KE1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN
130 140 150 160 170 180
190 200 210 220 230
pF1KE1 KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFI----KKVAKKPTNKAPHPKQEPQEI
::::::::::::::::::::::::::::::::::: .::::::::::::::::::::
NP_001 KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFISESSEKVAKKPTNKAPHPKQEPQEI
190 200 210 220 230 240
240 250 260 270
pF1KE1 NFPDDLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ
:::::::::::::::::::::::::::::::::::::::::
NP_001 NFPDDLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ
250 260 270 280
>>XP_016883626 (OMIM: 109535,606843) PREDICTED: tumor ne (222 aa)
initn: 1561 init1: 1561 opt: 1561 Z-score: 1410.7 bits: 268.5 E(85289): 7.7e-72
Smith-Waterman score: 1561; 100.0% identity (100.0% similar) in 215 aa overlap (1-215:1-215)
10 20 30 40 50 60
pF1KE1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQEPQEINFPD
:::::::::::::::::::::::::::::::::::
XP_016 KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFISGQEANQ
190 200 210 220
250 260 270
pF1KE1 DLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ
>>NP_001289682 (OMIM: 109535,606843) tumor necrosis fact (237 aa)
initn: 1390 init1: 1390 opt: 1390 Z-score: 1257.7 bits: 240.3 E(85289): 2.6e-63
Smith-Waterman score: 1390; 100.0% identity (100.0% similar) in 187 aa overlap (1-187:1-187)
10 20 30 40 50 60
pF1KE1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQEPQEINFPD
:::::::
NP_001 KTDVVCGESWTMGPGESLGRSPGSAESPGGDPHHLRDPVCHPLGAGLYQKGGQEANQ
190 200 210 220 230
>>XP_016883624 (OMIM: 109535,606843) PREDICTED: tumor ne (323 aa)
initn: 1409 init1: 1390 opt: 1390 Z-score: 1255.9 bits: 240.4 E(85289): 3.2e-63
Smith-Waterman score: 1390; 100.0% identity (100.0% similar) in 187 aa overlap (1-187:1-187)
10 20 30 40 50 60
pF1KE1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQEPQEINFPD
:::::::
XP_016 KTDVVCGESWTMGPGESLGRSPGSAESPGGDPHHLRDPVCHPLGAGLYQWPRSQPIRPPT
190 200 210 220 230 240
>>NP_690593 (OMIM: 109535,606843) tumor necrosis factor (203 aa)
initn: 1243 init1: 1243 opt: 1246 Z-score: 1130.0 bits: 216.4 E(85289): 3.4e-56
Smith-Waterman score: 1246; 89.9% identity (91.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KE1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_690 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN
::::::::::::::::::::::::::::::::::::::::::::: . .
NP_690 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTRSPGSAESPGGDPHH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQEPQEINFPD
: :: :
NP_690 LRDPVCHPLGAGLYQKGGQEANQ
190 200
>>XP_016883625 (OMIM: 109535,606843) PREDICTED: tumor ne (289 aa)
initn: 1262 init1: 1243 opt: 1246 Z-score: 1128.0 bits: 216.6 E(85289): 4.3e-56
Smith-Waterman score: 1246; 89.9% identity (91.0% similar) in 188 aa overlap (1-188:1-188)
10 20 30 40 50 60
pF1KE1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN
::::::::::::::::::::::::::::::::::::::::::::: . .
XP_016 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTRSPGSAESPGGDPHH
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE1 KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQEPQEINFPD
: :: :
XP_016 LRDPVCHPLGAGLYQWPRSQPIRPPTPSRNPRRSIFPTIFLAPTLLLQCRRLYMDANRSP
190 200 210 220 230 240
>>XP_011527411 (OMIM: 109535,606843) PREDICTED: tumor ne (166 aa)
initn: 1016 init1: 1016 opt: 1021 Z-score: 930.2 bits: 179.2 E(85289): 4.5e-45
Smith-Waterman score: 1021; 95.1% identity (97.2% similar) in 143 aa overlap (1-143:1-143)
10 20 30 40 50 60
pF1KE1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN
:::::::::::::::. . .:
XP_011 LHRSCSPGFGVKQIAVRPKTWLCNRQAQTRLMLSVVSPGQWALEKA
130 140 150 160
>>NP_001309351 (OMIM: 109535,606843) tumor necrosis fact (225 aa)
initn: 1602 init1: 1011 opt: 1011 Z-score: 919.6 bits: 177.7 E(85289): 1.8e-44
Smith-Waterman score: 1502; 81.2% identity (81.2% similar) in 277 aa overlap (1-277:1-225)
10 20 30 40 50 60
pF1KE1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN
::::::::::::::
NP_001 LHRSCSPGFGVKQI----------------------------------------------
130
190 200 210 220 230 240
pF1KE1 KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQEPQEINFPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ------GPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQEPQEINFPD
140 150 160 170 180
250 260 270
pF1KE1 DLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ
:::::::::::::::::::::::::::::::::::::
NP_001 DLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ
190 200 210 220
>>XP_005260676 (OMIM: 109535,606843) PREDICTED: tumor ne (229 aa)
initn: 1446 init1: 1011 opt: 1011 Z-score: 919.5 bits: 177.7 E(85289): 1.8e-44
Smith-Waterman score: 1479; 79.7% identity (80.1% similar) in 281 aa overlap (1-277:1-229)
10 20 30 40 50 60
pF1KE1 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQCCSLCQPGQKLVSDCTEFTETECL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE1 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PCGESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSEACESCV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE1 LHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVVQQAGTN
::::::::::::::
XP_005 LHRSCSPGFGVKQI----------------------------------------------
130
190 200 210 220 230
pF1KE1 KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFI----KKVAKKPTNKAPHPKQEPQEI
::::::::::::::::::::::::::::: .::::::::::::::::::::
XP_005 ------GPQDRLRALVVIPIIFGILFAILLVLVFISESSEKVAKKPTNKAPHPKQEPQEI
140 150 160 170 180
240 250 260 270
pF1KE1 NFPDDLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ
:::::::::::::::::::::::::::::::::::::::::
XP_005 NFPDDLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ
190 200 210 220
277 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 01:41:33 2016 done: Mon Nov 7 01:41:34 2016
Total Scan time: 7.410 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]