Result of FASTA (omim) for pFN21AE1571
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1571, 260 aa
  1>>>pF1KE1571 260 - 260 aa - 260 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8283+/-0.00029; mu= 14.4005+/- 0.018
 mean_var=124.2505+/-24.310, 0's: 0 Z-trim(121.9): 103  B-trim: 49 in 1/50
 Lambda= 0.115060
 statistics sampled from 39085 (39200) to 39085 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.46), width:  16
 Scan time:  7.280

The best scores are:                                      opt bits E(85289)
NP_001233 (OMIM: 186711,615122) CD27 antigen precu ( 260) 1930 330.6 1.7e-90
XP_016875721 (OMIM: 186711,615122) PREDICTED: CD27 ( 405) 1643 283.2 5.1e-76
XP_016875723 (OMIM: 186711,615122) PREDICTED: CD27 ( 358) 1631 281.1 1.9e-75
XP_011519344 (OMIM: 186711,615122) PREDICTED: CD27 ( 214) 1218 212.3 5.8e-55
XP_016875722 (OMIM: 186711,615122) PREDICTED: CD27 ( 359)  938 166.1   8e-41
NP_001241 (OMIM: 109535,606843) tumor necrosis fac ( 277)  300 60.1 5.1e-09
NP_001309350 (OMIM: 109535,606843) tumor necrosis  ( 281)  271 55.3 1.5e-07
XP_016883626 (OMIM: 109535,606843) PREDICTED: tumo ( 222)  251 51.8 1.2e-06
XP_011527411 (OMIM: 109535,606843) PREDICTED: tumo ( 166)  245 50.7   2e-06
NP_690593 (OMIM: 109535,606843) tumor necrosis fac ( 203)  245 50.8 2.3e-06
NP_001309351 (OMIM: 109535,606843) tumor necrosis  ( 225)  245 50.8 2.5e-06
XP_005260676 (OMIM: 109535,606843) PREDICTED: tumo ( 229)  245 50.8 2.5e-06
NP_001289682 (OMIM: 109535,606843) tumor necrosis  ( 237)  245 50.9 2.6e-06
XP_016883625 (OMIM: 109535,606843) PREDICTED: tumo ( 289)  245 50.9   3e-06
XP_016883624 (OMIM: 109535,606843) PREDICTED: tumo ( 323)  245 51.0 3.2e-06
NP_001307548 (OMIM: 134637,601859) tumor necrosis  ( 197)  236 49.3 6.4e-06
NP_690611 (OMIM: 134637,601859) tumor necrosis fac ( 220)  236 49.3 6.9e-06
NP_690610 (OMIM: 134637,601859) tumor necrosis fac ( 314)  236 49.5 8.8e-06
NP_000034 (OMIM: 134637,601859) tumor necrosis fac ( 335)  236 49.5 9.2e-06
XP_011538069 (OMIM: 134637,601859) PREDICTED: tumo ( 350)  236 49.5 9.4e-06
XP_011538068 (OMIM: 134637,601859) PREDICTED: tumo ( 362)  236 49.6 9.7e-06
XP_006717882 (OMIM: 134637,601859) PREDICTED: tumo ( 362)  236 49.6 9.7e-06
XP_011538067 (OMIM: 134637,601859) PREDICTED: tumo ( 368)  236 49.6 9.8e-06
XP_011538066 (OMIM: 134637,601859) PREDICTED: tumo ( 389)  236 49.6   1e-05
NP_003318 (OMIM: 600315,615593) tumor necrosis fac ( 277)  228 48.1   2e-05
XP_016857721 (OMIM: 600315,615593) PREDICTED: tumo ( 277)  228 48.1   2e-05
XP_016857720 (OMIM: 600315,615593) PREDICTED: tumo ( 303)  228 48.1 2.2e-05
XP_011540377 (OMIM: 600315,615593) PREDICTED: tumo ( 303)  228 48.1 2.2e-05
NP_001056 (OMIM: 142680,191190,614810) tumor necro ( 455)  222 47.3 5.6e-05
XP_006710681 (OMIM: 602250) PREDICTED: tumor necro ( 239)  210 45.0 0.00015
XP_011539688 (OMIM: 602250) PREDICTED: tumor necro ( 255)  210 45.1 0.00015
NP_001552 (OMIM: 602250) tumor necrosis factor rec ( 255)  210 45.1 0.00015
NP_001284534 (OMIM: 602746) tumor necrosis factor  ( 184)  207 44.4 0.00017
XP_006711082 (OMIM: 602746) PREDICTED: tumor necro ( 197)  207 44.5 0.00018
NP_001034753 (OMIM: 603366) tumor necrosis factor  ( 181)  206 44.3 0.00019
NP_001265197 (OMIM: 174810,602080,603499,612301) t ( 602)  213 46.0 0.00019
NP_001057 (OMIM: 191191) tumor necrosis factor rec ( 461)  210 45.4 0.00023
XP_011540365 (OMIM: 191191) PREDICTED: tumor necro ( 462)  210 45.4 0.00023
NP_003811 (OMIM: 602746) tumor necrosis factor rec ( 283)  207 44.6 0.00023
XP_011540362 (OMIM: 191191) PREDICTED: tumor necro ( 484)  210 45.4 0.00023
XP_016857700 (OMIM: 191191) PREDICTED: tumor necro ( 491)  210 45.4 0.00024
NP_683867 (OMIM: 603366) tumor necrosis factor rec ( 380)  206 44.6 0.00032
NP_003781 (OMIM: 603366) tumor necrosis factor rec ( 417)  206 44.6 0.00034
NP_683866 (OMIM: 603366) tumor necrosis factor rec ( 426)  206 44.7 0.00034
NP_003814 (OMIM: 603361) tumor necrosis factor rec ( 300)  203 44.0 0.00038
NP_001257878 (OMIM: 174810,602080,603499,612301) t ( 263)  194 42.4 0.00098
NP_001257880 (OMIM: 174810,602080,603499,612301) t ( 299)  194 42.5  0.0011
NP_001257879 (OMIM: 174810,602080,603499,612301) t ( 337)  194 42.6  0.0012
NP_003830 (OMIM: 174810,602080,603499,612301) tumo ( 616)  194 42.8  0.0017
XP_011524546 (OMIM: 174810,602080,603499,612301) P ( 621)  194 42.8  0.0017


>>NP_001233 (OMIM: 186711,615122) CD27 antigen precursor  (260 aa)
 initn: 1930 init1: 1930 opt: 1930  Z-score: 1745.5  bits: 330.6 E(85289): 1.7e-90
Smith-Waterman score: 1930; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260)

               10        20        30        40        50        60
pF1KE1 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPAEPCRYSCPREE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPAEPCRYSCPREE
              190       200       210       220       230       240

              250       260
pF1KE1 EGSTIPIQEDYRKPEPACSP
       ::::::::::::::::::::
NP_001 EGSTIPIQEDYRKPEPACSP
              250       260

>>XP_016875721 (OMIM: 186711,615122) PREDICTED: CD27 ant  (405 aa)
 initn: 1643 init1: 1643 opt: 1643  Z-score: 1485.7  bits: 283.2 E(85289): 5.1e-76
Smith-Waterman score: 1643; 95.7% identity (97.4% similar) in 232 aa overlap (1-232:1-232)

               10        20        30        40        50        60
pF1KE1 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPAEPCRYSCPREE
       :::::::::::::::::::::::::::::::::::::::.: ..    . ::        
XP_016 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSSKRQNTGLRSCPCTTPHWLNP
              190       200       210       220       230       240

              250       260                                        
pF1KE1 EGSTIPIQEDYRKPEPACSP                                        
                                                                   
XP_016 TAHAWNLTETHQLHFTSLGPTPSLPLAGVLLTPLPQAHPPLPISFSRLPLPPLLAKTHRI
              250       260       270       280       290       300

>>XP_016875723 (OMIM: 186711,615122) PREDICTED: CD27 ant  (358 aa)
 initn: 1626 init1: 1626 opt: 1631  Z-score: 1475.6  bits: 281.1 E(85289): 1.9e-75
Smith-Waterman score: 1631; 95.7% identity (97.4% similar) in 233 aa overlap (1-231:1-232)

               10        20        30        40        50        60
pF1KE1 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP
              130       140       150       160       170       180

              190       200       210       220         230        
pF1KE1 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGE--SPVEPAEPCRYSCPR
       :::::::::::::::::::::::::::::::::::::::. :   .:.  :.:       
XP_016 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRST-GVLLTPLPQAHPPLPISFS
              190       200       210       220        230         

      240       250       260                                      
pF1KE1 EEEGSTIPIQEDYRKPEPACSP                                      
                                                                   
XP_016 RLPLPPLLAKTHRISFCRQRRKSCGACRALSLQLPQGGGGQHHPHPGGLPKTGACLLPLS
     240       250       260       270       280       290         

>>XP_011519344 (OMIM: 186711,615122) PREDICTED: CD27 ant  (214 aa)
 initn: 1208 init1: 1208 opt: 1218  Z-score: 1107.8  bits: 212.3 E(85289): 5.8e-55
Smith-Waterman score: 1218; 95.6% identity (96.7% similar) in 181 aa overlap (81-260:34-214)

               60        70        80         90       100         
pF1KE1 KDCDQHRKAAQCDPCIPGVSFSPDHHTRPHCESCRHC-NSGLLVRNCTITANAECACRNG
                                     :   ::  . ::::::::::::::::::::
XP_011 VIISPSSLQFQKLRPVYTRIAGFKVAPLNKCSLARHFLEPGLLVRNCTITANAECACRNG
            10        20        30        40        50        60   

     110       120       130       140       150       160         
pF1KE1 WQCRDKECTECDPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 WQCRDKECTECDPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQL
            70        80        90       100       110       120   

     170       180       190       200       210       220         
pF1KE1 PARTLSTHWPPQRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PARTLSTHWPPQRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPA
           130       140       150       160       170       180   

     230       240       250       260
pF1KE1 EPCRYSCPREEEGSTIPIQEDYRKPEPACSP
       :::.:::::::::::::::::::::::::::
XP_011 EPCHYSCPREEEGSTIPIQEDYRKPEPACSP
           190       200       210    

>>XP_016875722 (OMIM: 186711,615122) PREDICTED: CD27 ant  (359 aa)
 initn: 928 init1: 928 opt: 938  Z-score: 853.9  bits: 166.1 E(85289): 8e-41
Smith-Waterman score: 938; 88.9% identity (92.2% similar) in 153 aa overlap (81-232:34-186)

               60        70        80         90       100         
pF1KE1 KDCDQHRKAAQCDPCIPGVSFSPDHHTRPHCESCRHC-NSGLLVRNCTITANAECACRNG
                                     :   ::  . ::::::::::::::::::::
XP_016 VIISPSSLQFQKLRPVYTRIAGFKVAPLNKCSLARHFLEPGLLVRNCTITANAECACRNG
            10        20        30        40        50        60   

     110       120       130       140       150       160         
pF1KE1 WQCRDKECTECDPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WQCRDKECTECDPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQL
            70        80        90       100       110       120   

     170       180       190       200       210       220         
pF1KE1 PARTLSTHWPPQRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::.: ..    .
XP_016 PARTLSTHWPPQRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSSKRQNTGLRS
           130       140       150       160       170       180   

     230       240       250       260                             
pF1KE1 EPCRYSCPREEEGSTIPIQEDYRKPEPACSP                             
        ::                                                         
XP_016 CPCTTPHWLNPTAHAWNLTETHQLHFTSLGPTPSLPLAGVLLTPLPQAHPPLPISFSRLP
           190       200       210       220       230       240   

>>NP_001241 (OMIM: 109535,606843) tumor necrosis factor   (277 aa)
 initn: 140 init1: 109 opt: 300  Z-score: 282.9  bits: 60.1 E(85289): 5.1e-09
Smith-Waterman score: 300; 26.1% identity (55.9% similar) in 261 aa overlap (10-256:8-260)

               10         20        30        40        50         
pF1KE1 MARPHPWWLCVL-GTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKA
                ::: : :.       : .: :..:  ... ::..:.::  ::.:: .  ..
NP_001   MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTET
                 10        20        30         40        50       

      60        70         80        90          100       110     
pF1KE1 AQCDPCIPGVSFSPDHHTRP-HCESCRHCNSGLLVR---NCTITANAECACRNGWQCRDK
        .: ::  : :   :  .:  ::.. ..:. .: .:   . :  ... :.:..::.: ..
NP_001 -ECLPC--GESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSE
         60          70        80        90       100       110    

         120           130       140       150       160       170 
pF1KE1 ECTEC----DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPA
        :  :    .  :. ..   .. . .   .:  . . :..  :    :  :  . ..: .
NP_001 ACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVV
          120       130       140       150       160       170    

             180        190       200         210       220        
pF1KE1 RTLSTHWPPQRSLCS-SDFIRILVIFSGMF-LVFTLAGAL-FLHQRRKYRSNKGESPVEP
       .  .:.      .:. .: .: ::..  .: ..:..  .: :...  :  .::.  : . 
NP_001 QQAGTN--KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQ-
          180         190       200       210       220       230  

      230       240         250       260             
pF1KE1 AEPCRYSCPREEEGSTI--PIQEDYRKPEPACSP             
        :: . . : .  ::.   :.::  .  .:                 
NP_001 -EPQEINFPDDLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ
              240       250       260       270       

>>NP_001309350 (OMIM: 109535,606843) tumor necrosis fact  (281 aa)
 initn: 140 init1: 109 opt: 271  Z-score: 256.8  bits: 55.3 E(85289): 1.5e-07
Smith-Waterman score: 287; 25.1% identity (55.5% similar) in 263 aa overlap (10-256:8-264)

               10         20        30        40        50         
pF1KE1 MARPHPWWLCVL-GTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKA
                ::: : :.       : .: :..:  ... ::..:.::  ::.:: .  ..
NP_001   MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTET
                 10        20        30         40        50       

      60        70         80        90          100       110     
pF1KE1 AQCDPCIPGVSFSPDHHTRP-HCESCRHCNSGLLVR---NCTITANAECACRNGWQCRDK
        .: ::  : :   :  .:  ::.. ..:. .: .:   . :  ... :.:..::.: ..
NP_001 -ECLPC--GESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSE
         60          70        80        90       100       110    

         120           130       140       150       160       170 
pF1KE1 ECTEC----DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPA
        :  :    .  :. ..   .. . .   .:  . . :..  :    :  :  . ..: .
NP_001 ACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVV
          120       130       140       150       160       170    

             180        190       200         210       220        
pF1KE1 RTLSTHWPPQRSLCS-SDFIRILVIFSGMF-LVFTLAGAL-FLHQRRKYRSNK--GESPV
       .  .:.      .:. .: .: ::..  .: ..:..  .: :. .  .  ..:  ...: 
NP_001 QQAGTN--KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFISESSEKVAKKPTNKAPH
          180         190       200       210       220       230  

        230       240         250       260             
pF1KE1 EPAEPCRYSCPREEEGSTI--PIQEDYRKPEPACSP             
          :: . . : .  ::.   :.::  .  .:                 
NP_001 PKQEPQEINFPDDLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ
            240       250       260       270       280 

>>XP_016883626 (OMIM: 109535,606843) PREDICTED: tumor ne  (222 aa)
 initn: 157 init1: 109 opt: 251  Z-score: 240.1  bits: 51.8 E(85289): 1.2e-06
Smith-Waterman score: 251; 25.5% identity (55.9% similar) in 204 aa overlap (10-203:8-205)

               10         20        30        40        50         
pF1KE1 MARPHPWWLCVL-GTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKA
                ::: : :.       : .: :..:  ... ::..:.::  ::.:: .  ..
XP_016   MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTET
                 10        20        30         40        50       

      60        70         80        90          100       110     
pF1KE1 AQCDPCIPGVSFSPDHHTRP-HCESCRHCNSGLLVR---NCTITANAECACRNGWQCRDK
        .: ::  : :   :  .:  ::.. ..:. .: .:   . :  ... :.:..::.: ..
XP_016 -ECLPC--GESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSE
         60          70        80        90       100       110    

         120           130       140       150       160       170 
pF1KE1 ECTEC----DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPA
        :  :    .  :. ..   .. . .   .:  . . :..  :    :  :  . ..: .
XP_016 ACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVV
          120       130       140       150       160       170    

             180        190       200       210       220       230
pF1KE1 RTLSTHWPPQRSLCS-SDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPAE
       .  .:.      .:. .: .: ::..  .: ..                           
XP_016 QQAGTN--KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFISGQEANQ          
          180         190       200       210       220            

              240       250       260
pF1KE1 PCRYSCPREEEGSTIPIQEDYRKPEPACSP

>>XP_011527411 (OMIM: 109535,606843) PREDICTED: tumor ne  (166 aa)
 initn: 172 init1: 109 opt: 245  Z-score: 236.2  bits: 50.7 E(85289): 2e-06
Smith-Waterman score: 245; 32.8% identity (61.2% similar) in 116 aa overlap (10-120:8-119)

               10         20        30        40        50         
pF1KE1 MARPHPWWLCVL-GTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKA
                ::: : :.       : .: :..:  ... ::..:.::  ::.:: .  ..
XP_011   MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTET
                 10        20        30         40        50       

      60        70         80        90          100       110     
pF1KE1 AQCDPCIPGVSFSPDHHTRP-HCESCRHCNSGLLVR---NCTITANAECACRNGWQCRDK
        .: ::  : :   :  .:  ::.. ..:. .: .:   . :  ... :.:..::.: ..
XP_011 -ECLPC--GESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSE
         60          70        80        90       100       110    

         120       130       140       150       160       170     
pF1KE1 ECTECDPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLS
        :  :                                                       
XP_011 ACESCVLHRSCSPGFGVKQIAVRPKTWLCNRQAQTRLMLSVVSPGQWALEKA        
          120       130       140       150       160              

>>NP_690593 (OMIM: 109535,606843) tumor necrosis factor   (203 aa)
 initn: 140 init1: 109 opt: 245  Z-score: 235.2  bits: 50.8 E(85289): 2.3e-06
Smith-Waterman score: 245; 32.8% identity (61.2% similar) in 116 aa overlap (10-120:8-119)

               10         20        30        40        50         
pF1KE1 MARPHPWWLCVL-GTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKA
                ::: : :.       : .: :..:  ... ::..:.::  ::.:: .  ..
NP_690   MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTET
                 10        20        30         40        50       

      60        70         80        90          100       110     
pF1KE1 AQCDPCIPGVSFSPDHHTRP-HCESCRHCNSGLLVR---NCTITANAECACRNGWQCRDK
        .: ::  : :   :  .:  ::.. ..:. .: .:   . :  ... :.:..::.: ..
NP_690 -ECLPC--GESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSE
         60          70        80        90       100       110    

         120       130       140       150       160       170     
pF1KE1 ECTECDPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLS
        :  :                                                       
NP_690 ACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTRSPGSAESP
          120       130       140       150       160       170    




260 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:43:29 2016 done: Mon Nov  7 01:43:31 2016
 Total Scan time:  7.280 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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