FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1571, 260 aa 1>>>pF1KE1571 260 - 260 aa - 260 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.8283+/-0.00029; mu= 14.4005+/- 0.018 mean_var=124.2505+/-24.310, 0's: 0 Z-trim(121.9): 103 B-trim: 49 in 1/50 Lambda= 0.115060 statistics sampled from 39085 (39200) to 39085 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.802), E-opt: 0.2 (0.46), width: 16 Scan time: 7.280 The best scores are: opt bits E(85289) NP_001233 (OMIM: 186711,615122) CD27 antigen precu ( 260) 1930 330.6 1.7e-90 XP_016875721 (OMIM: 186711,615122) PREDICTED: CD27 ( 405) 1643 283.2 5.1e-76 XP_016875723 (OMIM: 186711,615122) PREDICTED: CD27 ( 358) 1631 281.1 1.9e-75 XP_011519344 (OMIM: 186711,615122) PREDICTED: CD27 ( 214) 1218 212.3 5.8e-55 XP_016875722 (OMIM: 186711,615122) PREDICTED: CD27 ( 359) 938 166.1 8e-41 NP_001241 (OMIM: 109535,606843) tumor necrosis fac ( 277) 300 60.1 5.1e-09 NP_001309350 (OMIM: 109535,606843) tumor necrosis ( 281) 271 55.3 1.5e-07 XP_016883626 (OMIM: 109535,606843) PREDICTED: tumo ( 222) 251 51.8 1.2e-06 XP_011527411 (OMIM: 109535,606843) PREDICTED: tumo ( 166) 245 50.7 2e-06 NP_690593 (OMIM: 109535,606843) tumor necrosis fac ( 203) 245 50.8 2.3e-06 NP_001309351 (OMIM: 109535,606843) tumor necrosis ( 225) 245 50.8 2.5e-06 XP_005260676 (OMIM: 109535,606843) PREDICTED: tumo ( 229) 245 50.8 2.5e-06 NP_001289682 (OMIM: 109535,606843) tumor necrosis ( 237) 245 50.9 2.6e-06 XP_016883625 (OMIM: 109535,606843) PREDICTED: tumo ( 289) 245 50.9 3e-06 XP_016883624 (OMIM: 109535,606843) PREDICTED: tumo ( 323) 245 51.0 3.2e-06 NP_001307548 (OMIM: 134637,601859) tumor necrosis ( 197) 236 49.3 6.4e-06 NP_690611 (OMIM: 134637,601859) tumor necrosis fac ( 220) 236 49.3 6.9e-06 NP_690610 (OMIM: 134637,601859) tumor necrosis fac ( 314) 236 49.5 8.8e-06 NP_000034 (OMIM: 134637,601859) tumor necrosis fac ( 335) 236 49.5 9.2e-06 XP_011538069 (OMIM: 134637,601859) PREDICTED: tumo ( 350) 236 49.5 9.4e-06 XP_011538068 (OMIM: 134637,601859) PREDICTED: tumo ( 362) 236 49.6 9.7e-06 XP_006717882 (OMIM: 134637,601859) PREDICTED: tumo ( 362) 236 49.6 9.7e-06 XP_011538067 (OMIM: 134637,601859) PREDICTED: tumo ( 368) 236 49.6 9.8e-06 XP_011538066 (OMIM: 134637,601859) PREDICTED: tumo ( 389) 236 49.6 1e-05 NP_003318 (OMIM: 600315,615593) tumor necrosis fac ( 277) 228 48.1 2e-05 XP_016857721 (OMIM: 600315,615593) PREDICTED: tumo ( 277) 228 48.1 2e-05 XP_016857720 (OMIM: 600315,615593) PREDICTED: tumo ( 303) 228 48.1 2.2e-05 XP_011540377 (OMIM: 600315,615593) PREDICTED: tumo ( 303) 228 48.1 2.2e-05 NP_001056 (OMIM: 142680,191190,614810) tumor necro ( 455) 222 47.3 5.6e-05 XP_006710681 (OMIM: 602250) PREDICTED: tumor necro ( 239) 210 45.0 0.00015 XP_011539688 (OMIM: 602250) PREDICTED: tumor necro ( 255) 210 45.1 0.00015 NP_001552 (OMIM: 602250) tumor necrosis factor rec ( 255) 210 45.1 0.00015 NP_001284534 (OMIM: 602746) tumor necrosis factor ( 184) 207 44.4 0.00017 XP_006711082 (OMIM: 602746) PREDICTED: tumor necro ( 197) 207 44.5 0.00018 NP_001034753 (OMIM: 603366) tumor necrosis factor ( 181) 206 44.3 0.00019 NP_001265197 (OMIM: 174810,602080,603499,612301) t ( 602) 213 46.0 0.00019 NP_001057 (OMIM: 191191) tumor necrosis factor rec ( 461) 210 45.4 0.00023 XP_011540365 (OMIM: 191191) PREDICTED: tumor necro ( 462) 210 45.4 0.00023 NP_003811 (OMIM: 602746) tumor necrosis factor rec ( 283) 207 44.6 0.00023 XP_011540362 (OMIM: 191191) PREDICTED: tumor necro ( 484) 210 45.4 0.00023 XP_016857700 (OMIM: 191191) PREDICTED: tumor necro ( 491) 210 45.4 0.00024 NP_683867 (OMIM: 603366) tumor necrosis factor rec ( 380) 206 44.6 0.00032 NP_003781 (OMIM: 603366) tumor necrosis factor rec ( 417) 206 44.6 0.00034 NP_683866 (OMIM: 603366) tumor necrosis factor rec ( 426) 206 44.7 0.00034 NP_003814 (OMIM: 603361) tumor necrosis factor rec ( 300) 203 44.0 0.00038 NP_001257878 (OMIM: 174810,602080,603499,612301) t ( 263) 194 42.4 0.00098 NP_001257880 (OMIM: 174810,602080,603499,612301) t ( 299) 194 42.5 0.0011 NP_001257879 (OMIM: 174810,602080,603499,612301) t ( 337) 194 42.6 0.0012 NP_003830 (OMIM: 174810,602080,603499,612301) tumo ( 616) 194 42.8 0.0017 XP_011524546 (OMIM: 174810,602080,603499,612301) P ( 621) 194 42.8 0.0017 >>NP_001233 (OMIM: 186711,615122) CD27 antigen precursor (260 aa) initn: 1930 init1: 1930 opt: 1930 Z-score: 1745.5 bits: 330.6 E(85289): 1.7e-90 Smith-Waterman score: 1930; 100.0% identity (100.0% similar) in 260 aa overlap (1-260:1-260) 10 20 30 40 50 60 pF1KE1 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPAEPCRYSCPREE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPAEPCRYSCPREE 190 200 210 220 230 240 250 260 pF1KE1 EGSTIPIQEDYRKPEPACSP :::::::::::::::::::: NP_001 EGSTIPIQEDYRKPEPACSP 250 260 >>XP_016875721 (OMIM: 186711,615122) PREDICTED: CD27 ant (405 aa) initn: 1643 init1: 1643 opt: 1643 Z-score: 1485.7 bits: 283.2 E(85289): 5.1e-76 Smith-Waterman score: 1643; 95.7% identity (97.4% similar) in 232 aa overlap (1-232:1-232) 10 20 30 40 50 60 pF1KE1 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPAEPCRYSCPREE :::::::::::::::::::::::::::::::::::::::.: .. . :: XP_016 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSSKRQNTGLRSCPCTTPHWLNP 190 200 210 220 230 240 250 260 pF1KE1 EGSTIPIQEDYRKPEPACSP XP_016 TAHAWNLTETHQLHFTSLGPTPSLPLAGVLLTPLPQAHPPLPISFSRLPLPPLLAKTHRI 250 260 270 280 290 300 >>XP_016875723 (OMIM: 186711,615122) PREDICTED: CD27 ant (358 aa) initn: 1626 init1: 1626 opt: 1631 Z-score: 1475.6 bits: 281.1 E(85289): 1.9e-75 Smith-Waterman score: 1631; 95.7% identity (97.4% similar) in 233 aa overlap (1-231:1-232) 10 20 30 40 50 60 pF1KE1 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGE--SPVEPAEPCRYSCPR :::::::::::::::::::::::::::::::::::::::. : .:. :.: XP_016 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRST-GVLLTPLPQAHPPLPISFS 190 200 210 220 230 240 250 260 pF1KE1 EEEGSTIPIQEDYRKPEPACSP XP_016 RLPLPPLLAKTHRISFCRQRRKSCGACRALSLQLPQGGGGQHHPHPGGLPKTGACLLPLS 240 250 260 270 280 290 >>XP_011519344 (OMIM: 186711,615122) PREDICTED: CD27 ant (214 aa) initn: 1208 init1: 1208 opt: 1218 Z-score: 1107.8 bits: 212.3 E(85289): 5.8e-55 Smith-Waterman score: 1218; 95.6% identity (96.7% similar) in 181 aa overlap (81-260:34-214) 60 70 80 90 100 pF1KE1 KDCDQHRKAAQCDPCIPGVSFSPDHHTRPHCESCRHC-NSGLLVRNCTITANAECACRNG : :: . :::::::::::::::::::: XP_011 VIISPSSLQFQKLRPVYTRIAGFKVAPLNKCSLARHFLEPGLLVRNCTITANAECACRNG 10 20 30 40 50 60 110 120 130 140 150 160 pF1KE1 WQCRDKECTECDPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 WQCRDKECTECDPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQL 70 80 90 100 110 120 170 180 190 200 210 220 pF1KE1 PARTLSTHWPPQRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PARTLSTHWPPQRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPA 130 140 150 160 170 180 230 240 250 260 pF1KE1 EPCRYSCPREEEGSTIPIQEDYRKPEPACSP :::.::::::::::::::::::::::::::: XP_011 EPCHYSCPREEEGSTIPIQEDYRKPEPACSP 190 200 210 >>XP_016875722 (OMIM: 186711,615122) PREDICTED: CD27 ant (359 aa) initn: 928 init1: 928 opt: 938 Z-score: 853.9 bits: 166.1 E(85289): 8e-41 Smith-Waterman score: 938; 88.9% identity (92.2% similar) in 153 aa overlap (81-232:34-186) 60 70 80 90 100 pF1KE1 KDCDQHRKAAQCDPCIPGVSFSPDHHTRPHCESCRHC-NSGLLVRNCTITANAECACRNG : :: . :::::::::::::::::::: XP_016 VIISPSSLQFQKLRPVYTRIAGFKVAPLNKCSLARHFLEPGLLVRNCTITANAECACRNG 10 20 30 40 50 60 110 120 130 140 150 160 pF1KE1 WQCRDKECTECDPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 WQCRDKECTECDPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQL 70 80 90 100 110 120 170 180 190 200 210 220 pF1KE1 PARTLSTHWPPQRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPA ::::::::::::::::::::::::::::::::::::::::::::::::::.: .. . XP_016 PARTLSTHWPPQRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSSKRQNTGLRS 130 140 150 160 170 180 230 240 250 260 pF1KE1 EPCRYSCPREEEGSTIPIQEDYRKPEPACSP :: XP_016 CPCTTPHWLNPTAHAWNLTETHQLHFTSLGPTPSLPLAGVLLTPLPQAHPPLPISFSRLP 190 200 210 220 230 240 >>NP_001241 (OMIM: 109535,606843) tumor necrosis factor (277 aa) initn: 140 init1: 109 opt: 300 Z-score: 282.9 bits: 60.1 E(85289): 5.1e-09 Smith-Waterman score: 300; 26.1% identity (55.9% similar) in 261 aa overlap (10-256:8-260) 10 20 30 40 50 pF1KE1 MARPHPWWLCVL-GTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKA ::: : :. : .: :..: ... ::..:.:: ::.:: . .. NP_001 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTET 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 AQCDPCIPGVSFSPDHHTRP-HCESCRHCNSGLLVR---NCTITANAECACRNGWQCRDK .: :: : : : .: ::.. ..:. .: .: . : ... :.:..::.: .. NP_001 -ECLPC--GESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 ECTEC----DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPA : : . :. .. .. . . .: . . :.. : : : . ..: . NP_001 ACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVV 120 130 140 150 160 170 180 190 200 210 220 pF1KE1 RTLSTHWPPQRSLCS-SDFIRILVIFSGMF-LVFTLAGAL-FLHQRRKYRSNKGESPVEP . .:. .:. .: .: ::.. .: ..:.. .: :... : .::. : . NP_001 QQAGTN--KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFIKKVAKKPTNKAPHPKQ- 180 190 200 210 220 230 230 240 250 260 pF1KE1 AEPCRYSCPREEEGSTI--PIQEDYRKPEPACSP :: . . : . ::. :.:: . .: NP_001 -EPQEINFPDDLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ 240 250 260 270 >>NP_001309350 (OMIM: 109535,606843) tumor necrosis fact (281 aa) initn: 140 init1: 109 opt: 271 Z-score: 256.8 bits: 55.3 E(85289): 1.5e-07 Smith-Waterman score: 287; 25.1% identity (55.5% similar) in 263 aa overlap (10-256:8-264) 10 20 30 40 50 pF1KE1 MARPHPWWLCVL-GTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKA ::: : :. : .: :..: ... ::..:.:: ::.:: . .. NP_001 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTET 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 AQCDPCIPGVSFSPDHHTRP-HCESCRHCNSGLLVR---NCTITANAECACRNGWQCRDK .: :: : : : .: ::.. ..:. .: .: . : ... :.:..::.: .. NP_001 -ECLPC--GESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 ECTEC----DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPA : : . :. .. .. . . .: . . :.. : : : . ..: . NP_001 ACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVV 120 130 140 150 160 170 180 190 200 210 220 pF1KE1 RTLSTHWPPQRSLCS-SDFIRILVIFSGMF-LVFTLAGAL-FLHQRRKYRSNK--GESPV . .:. .:. .: .: ::.. .: ..:.. .: :. . . ..: ...: NP_001 QQAGTN--KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFISESSEKVAKKPTNKAPH 180 190 200 210 220 230 230 240 250 260 pF1KE1 EPAEPCRYSCPREEEGSTI--PIQEDYRKPEPACSP :: . . : . ::. :.:: . .: NP_001 PKQEPQEINFPDDLPGSNTAAPVQETLHGCQPVTQEDGKESRISVQERQ 240 250 260 270 280 >>XP_016883626 (OMIM: 109535,606843) PREDICTED: tumor ne (222 aa) initn: 157 init1: 109 opt: 251 Z-score: 240.1 bits: 51.8 E(85289): 1.2e-06 Smith-Waterman score: 251; 25.5% identity (55.9% similar) in 204 aa overlap (10-203:8-205) 10 20 30 40 50 pF1KE1 MARPHPWWLCVL-GTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKA ::: : :. : .: :..: ... ::..:.:: ::.:: . .. XP_016 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTET 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 AQCDPCIPGVSFSPDHHTRP-HCESCRHCNSGLLVR---NCTITANAECACRNGWQCRDK .: :: : : : .: ::.. ..:. .: .: . : ... :.:..::.: .. XP_016 -ECLPC--GESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 ECTEC----DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPA : : . :. .. .. . . .: . . :.. : : : . ..: . XP_016 ACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTSCETKDLVV 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 RTLSTHWPPQRSLCS-SDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPAE . .:. .:. .: .: ::.. .: .. XP_016 QQAGTN--KTDVVCGPQDRLRALVVIPIIFGILFAILLVLVFISGQEANQ 180 190 200 210 220 240 250 260 pF1KE1 PCRYSCPREEEGSTIPIQEDYRKPEPACSP >>XP_011527411 (OMIM: 109535,606843) PREDICTED: tumor ne (166 aa) initn: 172 init1: 109 opt: 245 Z-score: 236.2 bits: 50.7 E(85289): 2e-06 Smith-Waterman score: 245; 32.8% identity (61.2% similar) in 116 aa overlap (10-120:8-119) 10 20 30 40 50 pF1KE1 MARPHPWWLCVL-GTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKA ::: : :. : .: :..: ... ::..:.:: ::.:: . .. XP_011 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTET 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 AQCDPCIPGVSFSPDHHTRP-HCESCRHCNSGLLVR---NCTITANAECACRNGWQCRDK .: :: : : : .: ::.. ..:. .: .: . : ... :.:..::.: .. XP_011 -ECLPC--GESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 ECTECDPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLS : : XP_011 ACESCVLHRSCSPGFGVKQIAVRPKTWLCNRQAQTRLMLSVVSPGQWALEKA 120 130 140 150 160 >>NP_690593 (OMIM: 109535,606843) tumor necrosis factor (203 aa) initn: 140 init1: 109 opt: 245 Z-score: 235.2 bits: 50.8 E(85289): 2.3e-06 Smith-Waterman score: 245; 32.8% identity (61.2% similar) in 116 aa overlap (10-120:8-119) 10 20 30 40 50 pF1KE1 MARPHPWWLCVL-GTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKA ::: : :. : .: :..: ... ::..:.:: ::.:: . .. NP_690 MVRLPLQCVLWGCLLTAVHPEPPTACREKQYLINSQ-CCSLCQPGQKLVSDCTEFTET 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 AQCDPCIPGVSFSPDHHTRP-HCESCRHCNSGLLVR---NCTITANAECACRNGWQCRDK .: :: : : : .: ::.. ..:. .: .: . : ... :.:..::.: .. NP_690 -ECLPC--GESEFLDTWNRETHCHQHKYCDPNLGLRVQQKGTSETDTICTCEEGWHCTSE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 ECTECDPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLS : : NP_690 ACESCVLHRSCSPGFGVKQIATGVSDTICEPCPVGFFSNVSSAFEKCHPWTRSPGSAESP 120 130 140 150 160 170 260 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:43:29 2016 done: Mon Nov 7 01:43:31 2016 Total Scan time: 7.280 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]