FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1571, 260 aa 1>>>pF1KE1571 260 - 260 aa - 260 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.1115+/-0.000729; mu= 12.9977+/- 0.044 mean_var=124.9720+/-24.310, 0's: 0 Z-trim(114.5): 42 B-trim: 43 in 1/50 Lambda= 0.114728 statistics sampled from 15044 (15086) to 15044 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.463), width: 16 Scan time: 2.600 The best scores are: opt bits E(32554) CCDS8545.1 CD27 gene_id:939|Hs108|chr12 ( 260) 1923 328.5 2.8e-90 >>CCDS8545.1 CD27 gene_id:939|Hs108|chr12 (260 aa) initn: 1923 init1: 1923 opt: 1923 Z-score: 1734.1 bits: 328.5 E(32554): 2.8e-90 Smith-Waterman score: 1923; 99.6% identity (100.0% similar) in 260 aa overlap (1-260:1-260) 10 20 30 40 50 60 pF1KE1 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 MARPHPWWLCVLGTLVGLSATPAPKSCPERHYWAQGKLCCQMCEPGTFLVKDCDQHRKAA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 QCDPCIPGVSFSPDHHTRPHCESCRHCNSGLLVRNCTITANAECACRNGWQCRDKECTEC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS85 DPLPNPSLTARSSQALSPHPQPTHLPYVSEMLEARTAGHMQTLADFRQLPARTLSTHWPP 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPAEPCRYSCPREE ::::::::::::::::::::::::::::::::::::::::::::::::::::.::::::: CCDS85 QRSLCSSDFIRILVIFSGMFLVFTLAGALFLHQRRKYRSNKGESPVEPAEPCHYSCPREE 190 200 210 220 230 240 250 260 pF1KE1 EGSTIPIQEDYRKPEPACSP :::::::::::::::::::: CCDS85 EGSTIPIQEDYRKPEPACSP 250 260 260 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 01:43:29 2016 done: Mon Nov 7 01:43:29 2016 Total Scan time: 2.600 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]