Result of FASTA (omim) for pFN21AE5607
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5607, 586 aa
  1>>>pF1KE5607 586 - 586 aa - 586 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6488+/-0.000402; mu= 3.9593+/- 0.025
 mean_var=177.8544+/-34.690, 0's: 0 Z-trim(118.3): 23  B-trim: 0 in 0/51
 Lambda= 0.096171
 statistics sampled from 31067 (31089) to 31067 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.365), width:  16
 Scan time: 10.290

The best scores are:                                      opt bits E(85289)
XP_011532720 (OMIM: 605974) PREDICTED: pre-mRNA-sp ( 586) 3970 563.3 7.9e-160
NP_006416 (OMIM: 605974) pre-mRNA-splicing factor  ( 586) 3970 563.3 7.9e-160
XP_005265850 (OMIM: 605974) PREDICTED: pre-mRNA-sp ( 596) 3970 563.3  8e-160


>>XP_011532720 (OMIM: 605974) PREDICTED: pre-mRNA-splici  (586 aa)
 initn: 3970 init1: 3970 opt: 3970  Z-score: 2990.4  bits: 563.3 E(85289): 7.9e-160
Smith-Waterman score: 3970; 99.7% identity (99.8% similar) in 586 aa overlap (1-586:1-586)

               10        20        30        40        50        60
pF1KE5 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSVITKYRKGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
XP_011 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSIITKYRKGAC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSEDEDE
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
XP_011 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 EDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECIINEITGEESV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECIINEITGEESV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 KKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALNAEEARLLHVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALNAEEARLLHVK
              490       500       510       520       530       540

              550       560       570       580      
pF1KE5 ETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ
       ::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ
              550       560       570       580      

>>NP_006416 (OMIM: 605974) pre-mRNA-splicing factor SLU7  (586 aa)
 initn: 3970 init1: 3970 opt: 3970  Z-score: 2990.4  bits: 563.3 E(85289): 7.9e-160
Smith-Waterman score: 3970; 99.7% identity (99.8% similar) in 586 aa overlap (1-586:1-586)

               10        20        30        40        50        60
pF1KE5 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSVITKYRKGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::
NP_006 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSIITKYRKGAC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSEDEDE
       :::::::::::::::::::::::::::::::::::::::::::::::: :::::::::::
NP_006 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYE
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 EDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECIINEITGEESV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECIINEITGEESV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 KKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALNAEEARLLHVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 KKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALNAEEARLLHVK
              490       500       510       520       530       540

              550       560       570       580      
pF1KE5 ETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ
       ::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ
              550       560       570       580      

>>XP_005265850 (OMIM: 605974) PREDICTED: pre-mRNA-splici  (596 aa)
 initn: 3970 init1: 3970 opt: 3970  Z-score: 2990.3  bits: 563.3 E(85289): 8e-160
Smith-Waterman score: 3970; 99.7% identity (99.8% similar) in 586 aa overlap (1-586:11-596)

                         10        20        30        40        50
pF1KE5           MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPA
                 ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MKTSIGGQITMSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPA
               10        20        30        40        50        60

               60        70        80        90       100       110
pF1KE5 EVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENS
               70        80        90       100       110       120

              120       130       140       150       160       170
pF1KE5 VITKYRKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRW
       .:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IITKYRKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRW
              130       140       150       160       170       180

              180       190       200       210       220       230
pF1KE5 NGYNPEEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTE
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: :
XP_005 NGYNPEEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQME
              190       200       210       220       230       240

              240       250       260       270       280       290
pF1KE5 KDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTR
              250       260       270       280       290       300

              300       310       320       330       340       350
pF1KE5 AMRENPYANAGKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AMRENPYANAGKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKL
              310       320       330       340       350       360

              360       370       380       390       400       410
pF1KE5 ELLYKSFKVKKEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ELLYKSFKVKKEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQ
              370       380       390       400       410       420

              420       430       440       450       460       470
pF1KE5 ERAVACSKYEEDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 ERAVACSKYEEDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECI
              430       440       450       460       470       480

              480       490       500       510       520       530
pF1KE5 INEITGEESVKKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 INEITGEESVKKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALN
              490       500       510       520       530       540

              540       550       560       570       580      
pF1KE5 AEEARLLHVKETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AEEARLLHVKETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ
              550       560       570       580       590      




586 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 05:05:45 2016 done: Tue Nov  8 05:05:47 2016
 Total Scan time: 10.290 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]
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