FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5607, 586 aa 1>>>pF1KE5607 586 - 586 aa - 586 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.6488+/-0.000402; mu= 3.9593+/- 0.025 mean_var=177.8544+/-34.690, 0's: 0 Z-trim(118.3): 23 B-trim: 0 in 0/51 Lambda= 0.096171 statistics sampled from 31067 (31089) to 31067 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.365), width: 16 Scan time: 10.290 The best scores are: opt bits E(85289) XP_011532720 (OMIM: 605974) PREDICTED: pre-mRNA-sp ( 586) 3970 563.3 7.9e-160 NP_006416 (OMIM: 605974) pre-mRNA-splicing factor ( 586) 3970 563.3 7.9e-160 XP_005265850 (OMIM: 605974) PREDICTED: pre-mRNA-sp ( 596) 3970 563.3 8e-160 >>XP_011532720 (OMIM: 605974) PREDICTED: pre-mRNA-splici (586 aa) initn: 3970 init1: 3970 opt: 3970 Z-score: 2990.4 bits: 563.3 E(85289): 7.9e-160 Smith-Waterman score: 3970; 99.7% identity (99.8% similar) in 586 aa overlap (1-586:1-586) 10 20 30 40 50 60 pF1KE5 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSVITKYRKGAC ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: XP_011 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSIITKYRKGAC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSEDEDE :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: XP_011 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYE 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 EDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECIINEITGEESV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 EDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECIINEITGEESV 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 KKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALNAEEARLLHVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALNAEEARLLHVK 490 500 510 520 530 540 550 560 570 580 pF1KE5 ETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ :::::::::::::::::::::::::::::::::::::::::::::: XP_011 ETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ 550 560 570 580 >>NP_006416 (OMIM: 605974) pre-mRNA-splicing factor SLU7 (586 aa) initn: 3970 init1: 3970 opt: 3970 Z-score: 2990.4 bits: 563.3 E(85289): 7.9e-160 Smith-Waterman score: 3970; 99.7% identity (99.8% similar) in 586 aa overlap (1-586:1-586) 10 20 30 40 50 60 pF1KE5 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPAEVDEEGKDIN 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSVITKYRKGAC ::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::: NP_006 PHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENSIITKYRKGAC 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 ENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRWNGYNPEEHMK 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE5 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTEKDHNSEDEDE :::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::: NP_006 IVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQMEKDHNSEDEDE 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE5 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 DKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTRAMRENPYANA 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE5 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 GKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKLELLYKSFKVK 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE5 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 KEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQERAVACSKYE 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE5 EDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECIINEITGEESV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 EDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECIINEITGEESV 430 440 450 460 470 480 490 500 510 520 530 540 pF1KE5 KKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALNAEEARLLHVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_006 KKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALNAEEARLLHVK 490 500 510 520 530 540 550 560 570 580 pF1KE5 ETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ :::::::::::::::::::::::::::::::::::::::::::::: NP_006 ETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ 550 560 570 580 >>XP_005265850 (OMIM: 605974) PREDICTED: pre-mRNA-splici (596 aa) initn: 3970 init1: 3970 opt: 3970 Z-score: 2990.3 bits: 563.3 E(85289): 8e-160 Smith-Waterman score: 3970; 99.7% identity (99.8% similar) in 586 aa overlap (1-586:11-596) 10 20 30 40 50 pF1KE5 MSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPA :::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 MKTSIGGQITMSATVVDAVNAAPLSGSKEMSLEEPKKMTREDWRKKKELEEQRKLGNAPA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 EVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 EVDEEGKDINPHIPQYISSVPWYIDPSKRPTLKHQRPQPEKQKQFSSSGEWYKRGVKENS 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE5 VITKYRKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRW .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 IITKYRKGACENCGAMTHKKKDCFERPRRVGAKFTGTNIAPDEHVQPQLMFDYDGKRDRW 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE5 NGYNPEEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: : XP_005 NGYNPEEHMKIVEEYAKVDLAKRTLKAQKLQEELASGKLVEQANSPKHQWGEEEPNSQME 190 200 210 220 230 240 240 250 260 270 280 290 pF1KE5 KDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 KDHNSEDEDEDKYADDIDMPGQNFDSKRRITVRNLRIREDIAKYLRNLDPNSAYYDPKTR 250 260 270 280 290 300 300 310 320 330 340 350 pF1KE5 AMRENPYANAGKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AMRENPYANAGKNPDEVSYAGDNFVRYTGDTISMAQTQLFAWEAYDKGSEVHLQADPTKL 310 320 330 340 350 360 360 370 380 390 400 410 pF1KE5 ELLYKSFKVKKEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ELLYKSFKVKKEDFKEQQKESILEKYGGQEHLDAPPAELLLAQTEDYVEYSRHGTVIKGQ 370 380 390 400 410 420 420 430 440 450 460 470 pF1KE5 ERAVACSKYEEDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ERAVACSKYEEDVKIHNHTHIWGSYWKEGRWGYKCCHSFFKYSYCTGEAGKEIVNSEECI 430 440 450 460 470 480 480 490 500 510 520 530 pF1KE5 INEITGEESVKKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 INEITGEESVKKPQTLMELHQEKLKEEKKKKKKKKKKHRKSSSDSDDEEKKHEKLKKALN 490 500 510 520 530 540 540 550 560 570 580 pF1KE5 AEEARLLHVKETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AEEARLLHVKETMQIDERKRPYNSMYETREPTEEEMEAYRMKRQRPDDPMASFLGQ 550 560 570 580 590 586 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 05:05:45 2016 done: Tue Nov 8 05:05:47 2016 Total Scan time: 10.290 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]