Result of FASTA (omim) for
pFN21AB7986
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7986, 325 aa
1>>>pF1KB7986 325 - 325 aa - 325 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2354+/-0.000334; mu= 6.8229+/- 0.021
mean_var=114.7369+/-23.705, 0's: 0 Z-trim(118.5): 47 B-trim: 1047 in 1/53
Lambda= 0.119735
statistics sampled from 31551 (31601) to 31551 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.747), E-opt: 0.2 (0.371), width: 16
Scan time: 8.640
The best scores are: opt bits E(85289)
NP_002189 (OMIM: 147575,211980,613659) interferon ( 325) 2245 398.4 1.1e-110
XP_011541681 (OMIM: 147575,211980,613659) PREDICTE ( 241) 1620 290.3 2.7e-78
XP_011541680 (OMIM: 147575,211980,613659) PREDICTE ( 284) 1270 229.9 4.9e-60
NP_002190 (OMIM: 147576) interferon regulatory fac ( 349) 722 135.3 1.8e-31
NP_002154 (OMIM: 601565,614893,614894) interferon ( 426) 395 78.8 2.2e-14
XP_006715153 (OMIM: 601900,611724) PREDICTED: inte ( 415) 382 76.6 1e-13
NP_001182215 (OMIM: 601900,611724) interferon regu ( 450) 382 76.6 1.1e-13
NP_002451 (OMIM: 601900,611724) interferon regulat ( 451) 382 76.6 1.1e-13
XP_006716037 (OMIM: 607218,612245,612251) PREDICTE ( 514) 382 76.6 1.2e-13
NP_001092099 (OMIM: 607218,612245,612251) interfer ( 514) 382 76.6 1.2e-13
XP_011514461 (OMIM: 607218,612245,612251) PREDICTE ( 514) 382 76.6 1.2e-13
XP_011514460 (OMIM: 607218,612245,612251) PREDICTE ( 514) 382 76.6 1.2e-13
XP_011514462 (OMIM: 607218,612245,612251) PREDICTE ( 514) 382 76.6 1.2e-13
XP_005250374 (OMIM: 607218,612245,612251) PREDICTE ( 514) 382 76.6 1.2e-13
NP_001229381 (OMIM: 607218,612245,612251) interfer ( 412) 377 75.7 1.8e-13
XP_011514465 (OMIM: 607218,612245,612251) PREDICTE ( 488) 377 75.7 2.1e-13
XP_011514464 (OMIM: 607218,612245,612251) PREDICTE ( 488) 377 75.7 2.1e-13
XP_011514466 (OMIM: 607218,612245,612251) PREDICTE ( 488) 377 75.7 2.1e-13
NP_116032 (OMIM: 607218,612245,612251) interferon ( 498) 377 75.8 2.2e-13
NP_001092100 (OMIM: 607218,612245,612251) interfer ( 498) 377 75.8 2.2e-13
NP_001092097 (OMIM: 607218,612245,612251) interfer ( 498) 377 75.8 2.2e-13
XP_011514463 (OMIM: 607218,612245,612251) PREDICTE ( 504) 377 75.8 2.2e-13
NP_006138 (OMIM: 119300,119500,607199,608864) inte ( 467) 360 72.8 1.6e-12
NP_006075 (OMIM: 147574) interferon regulatory fac ( 393) 350 71.0 4.5e-12
NP_001184053 (OMIM: 603734,616532) interferon regu ( 300) 263 56.0 1.2e-07
NP_001562 (OMIM: 603734,616532) interferon regulat ( 427) 263 56.0 1.6e-07
XP_016882256 (OMIM: 603734,616532) PREDICTED: inte ( 427) 263 56.0 1.6e-07
XP_016882255 (OMIM: 603734,616532) PREDICTED: inte ( 427) 263 56.0 1.6e-07
XP_006723260 (OMIM: 603734,616532) PREDICTED: inte ( 452) 263 56.0 1.7e-07
XP_006723261 (OMIM: 603734,616532) PREDICTED: inte ( 452) 263 56.0 1.7e-07
NP_001184051 (OMIM: 603734,616532) interferon regu ( 452) 263 56.0 1.7e-07
NP_004020 (OMIM: 605047,616345) interferon regulat ( 474) 214 47.6 6.2e-05
XP_005252966 (OMIM: 605047,616345) PREDICTED: inte ( 487) 214 47.6 6.4e-05
XP_011518368 (OMIM: 605047,616345) PREDICTED: inte ( 502) 214 47.6 6.5e-05
NP_001563 (OMIM: 605047,616345) interferon regulat ( 503) 214 47.6 6.5e-05
XP_005252964 (OMIM: 605047,616345) PREDICTED: inte ( 515) 214 47.6 6.7e-05
XP_005252963 (OMIM: 605047,616345) PREDICTED: inte ( 516) 214 47.6 6.7e-05
NP_004022 (OMIM: 605047,616345) interferon regulat ( 516) 214 47.6 6.7e-05
>>NP_002189 (OMIM: 147575,211980,613659) interferon regu (325 aa)
initn: 2245 init1: 2245 opt: 2245 Z-score: 2108.2 bits: 398.4 E(85289): 1.1e-110
Smith-Waterman score: 2245; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)
10 20 30 40 50 60
pF1KB7 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLPEDIMKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLPEDIMKL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 LEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFTDLKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 LEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFTDLKN
250 260 270 280 290 300
310 320
pF1KB7 MDATWLDSLLTPVRLPSIQAIPCAP
:::::::::::::::::::::::::
NP_002 MDATWLDSLLTPVRLPSIQAIPCAP
310 320
>>XP_011541681 (OMIM: 147575,211980,613659) PREDICTED: i (241 aa)
initn: 1620 init1: 1620 opt: 1620 Z-score: 1526.7 bits: 290.3 E(85289): 2.7e-78
Smith-Waterman score: 1620; 100.0% identity (100.0% similar) in 241 aa overlap (85-325:1-241)
60 70 80 90 100 110
pF1KB7 FRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPP
::::::::::::::::::::::::::::::
XP_011 MNSLPDIEEVKDQSRNKGSSAVRVYRMLPP
10 20 30
120 130 140 150 160 170
pF1KB7 LTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLE
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB7 VEQALTPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VEQALTPALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLP
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB7 EDIMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDIMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRV
160 170 180 190 200 210
300 310 320
pF1KB7 FTDLKNMDATWLDSLLTPVRLPSIQAIPCAP
:::::::::::::::::::::::::::::::
XP_011 FTDLKNMDATWLDSLLTPVRLPSIQAIPCAP
220 230 240
>>XP_011541680 (OMIM: 147575,211980,613659) PREDICTED: i (284 aa)
initn: 1301 init1: 1270 opt: 1270 Z-score: 1198.9 bits: 229.9 E(85289): 4.9e-60
Smith-Waterman score: 1872; 87.4% identity (87.4% similar) in 325 aa overlap (1-325:1-284)
10 20 30 40 50 60
pF1KB7 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQALT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLPEDIMKL
:: :::::::::::::::::
XP_011 PA-----------------------------------------TTDEDEEGKLPEDIMKL
190
250 260 270 280 290 300
pF1KB7 LEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFTDLKN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFTDLKN
200 210 220 230 240 250
310 320
pF1KB7 MDATWLDSLLTPVRLPSIQAIPCAP
:::::::::::::::::::::::::
XP_011 MDATWLDSLLTPVRLPSIQAIPCAP
260 270 280
>>NP_002190 (OMIM: 147576) interferon regulatory factor (349 aa)
initn: 718 init1: 675 opt: 722 Z-score: 685.9 bits: 135.3 E(85289): 1.8e-31
Smith-Waterman score: 760; 46.7% identity (67.6% similar) in 272 aa overlap (1-259:1-265)
10 20 30 40 50 60
pF1KB7 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAI
::. ::::::::: ::::: :::: :.:::. :::::: :::.::::..::: :::.:::
NP_002 MPVERMRMRPWLEEQINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKNQR
:::... : .:::::::::::::::::::::::::.: .::..: ::::::: . ..
NP_002 HTGKHQPGVDKPDPKTWKANFRCAMNSLPDIEEVKDKSIKKGNNAFRVYRMLPLSERPSK
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 KERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYT------VPGYMQDLE
: .: :. .. : : .. .:: .:.:.:. : ... : : . .. .
NP_002 KGKKPKTEKEDKVKHIKQEPVESSLG-LSNGVSD--LSPEYAVLTSTIKNEVDSTVNIIV
130 140 150 160 170
180 190 200 210 220
pF1KB7 VEQA-LTPALSPCAVSSTLPDWHIPVEVV------PDSTSDLYNFQVSPMPSTSEATTDE
: :. : . . .. :: :::. : : :.:: .:.::. : .:. : .
NP_002 VGQSHLDSNIENQEIVTNPPDICQVVEVTTESDEQPVSMSELYPLQISPVSSYAESETTD
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 DEEGKLPEDIMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDI
. .: : . . .:. :..:: :: :
NP_002 S----VPSDEESAEGRPHWRKRNIEGKQYLSNMGTRGSYLLPGMASFVTSNKPDLQVTIK
240 250 260 270 280 290
290 300 310 320
pF1KB7 GLSLQRVFTDLKNMDATWLDSLLTPVRLPSIQAIPCAP
NP_002 EESNPVPYNSSWPPFQDLPLSSSMTPASSSSRPDRETRASVIKKTSDITQARVKSC
300 310 320 330 340
>>NP_002154 (OMIM: 601565,614893,614894) interferon regu (426 aa)
initn: 455 init1: 235 opt: 395 Z-score: 379.2 bits: 78.8 E(85289): 2.2e-14
Smith-Waterman score: 408; 31.2% identity (57.5% similar) in 266 aa overlap (7-270:9-243)
10 20 30 40 50
pF1KB7 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSW
:.: :: ::.:.. ::::: :.:. .:.::::::.:. .. . :: .:..:
NP_002 MCDRNGGRRLRQWLIEQIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAW
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 AIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRMLPPLTKN
:. :..: :.: .: :::. .:::.:. ::.::: :.:. : .:::..: ..
NP_002 AVFKGKFKEGDKA-EPATWKTRLRCALNKSPDFEEVTDRSQLDISEPYKVYRIVP---EE
70 80 90 100 110
120 130 140 150 160 170
pF1KB7 QRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSYTVPGYMQDLEVEQA
..: . . .. ... . :: : : . .. .. : :: ....
NP_002 EQKCKLGVATAGCVNEVTEMECGRSEIDEL---IKEPSVDD---------YMG--MIKRS
120 130 140 150 160
180 190 200 210 220 230
pF1KB7 LTPALSPCAVSSTLPDW--HIPVEVVPDSTSDLYNFQVSPMPSTSEATTDEDEEGKLPED
.: : :. :::: . : :: :. :. . . :. . . :::
NP_002 PSPP-EACR-SQLLPDWWAQQPSTGVPLVTG--YTTYDAHHSAFSQMVISFYYGGKLV--
170 180 190 200 210
240 250 260 270 280 290
pF1KB7 IMKLLEQSEWQPTNVDGKGYLLNEPGVQPTSVYGDFSCKEEPEIDSPGGDIGLSLQRVFT
.. : .: :..::. :..::
NP_002 -------GQATTTCPEGCRLSLSQPGLPGTKLYGPEGLELVRFPPADAIPSERQRQVTRK
220 230 240 250 260
300 310 320
pF1KB7 DLKNMDATWLDSLLTPVRLPSIQAIPCAP
NP_002 LFGHLERGVLLHSSRQGVFVKRLCQGRVFCSGNAVVCKGRPNKLERDEVVQVFDTSQFFR
270 280 290 300 310 320
>>XP_006715153 (OMIM: 601900,611724) PREDICTED: interfer (415 aa)
initn: 406 init1: 382 opt: 382 Z-score: 367.3 bits: 76.6 E(85289): 1e-13
Smith-Waterman score: 382; 43.1% identity (75.9% similar) in 116 aa overlap (7-122:23-138)
10 20 30 40
pF1KB7 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKH
..: :: ::.:.. :::.: :.:. ::.::::::.:.
XP_006 MNLEGGGRGGEFGMSAVSCGNGKLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 GWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSS
.. ..:: ::..::. :... : .::: :::. .:::.:. :.::. ..:. :.
XP_006 DYNREEDAALFKAWALFKGKFREGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISD
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 AVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSY
.:::..: .:. :.
XP_006 PYKVYRIVPEGAKKGAKQLTLEDPQMSMSHPYTMTTPYPSLPAQQVHNYMMPPLDRSWRD
130 140 150 160 170 180
>>NP_001182215 (OMIM: 601900,611724) interferon regulato (450 aa)
initn: 382 init1: 382 opt: 382 Z-score: 366.7 bits: 76.6 E(85289): 1.1e-13
Smith-Waterman score: 382; 43.1% identity (75.9% similar) in 116 aa overlap (7-122:23-138)
10 20 30 40
pF1KB7 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKH
..: :: ::.:.. :::.: :.:. ::.::::::.:.
NP_001 MNLEGGGRGGEFGMSAVSCGNGKLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 GWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSS
.. ..:: ::..::. :... : .::: :::. .:::.:. :.::. ..:. :.
NP_001 DYNREEDAALFKAWALFKGKFREGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISD
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 AVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSY
.:::..: .:. :.
NP_001 PYKVYRIVPEGAKKGAKQLTLEDPQMSMSHPYTMTTPYPSLPAQVHNYMMPPLDRSWRDY
130 140 150 160 170 180
>>NP_002451 (OMIM: 601900,611724) interferon regulatory (451 aa)
initn: 406 init1: 382 opt: 382 Z-score: 366.7 bits: 76.6 E(85289): 1.1e-13
Smith-Waterman score: 382; 43.1% identity (75.9% similar) in 116 aa overlap (7-122:23-138)
10 20 30 40
pF1KB7 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKH
..: :: ::.:.. :::.: :.:. ::.::::::.:.
NP_002 MNLEGGGRGGEFGMSAVSCGNGKLRQWLIDQIDSGKYPGLVWENEEKSIFRIPWKHAGKQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 GWDINKDACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSS
.. ..:: ::..::. :... : .::: :::. .:::.:. :.::. ..:. :.
NP_002 DYNREEDAALFKAWALFKGKFREGIDKPDPPTWKTRLRCALNKSNDFEELVERSQLDISD
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 AVRVYRMLPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSSY
.:::..: .:. :.
NP_002 PYKVYRIVPEGAKKGAKQLTLEDPQMSMSHPYTMTTPYPSLPAQQVHNYMMPPLDRSWRD
130 140 150 160 170 180
>>XP_006716037 (OMIM: 607218,612245,612251) PREDICTED: i (514 aa)
initn: 376 init1: 324 opt: 382 Z-score: 365.8 bits: 76.6 E(85289): 1.2e-13
Smith-Waterman score: 385; 28.7% identity (52.5% similar) in 341 aa overlap (2-322:11-322)
10 20 30 40 50
pF1KB7 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKD
: :.:..::: :.:: : ::: :.: :. .: :::.::..:: . . :
XP_006 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 ACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM
.:..:: .::.: : : :: ::::.:::.:. :.. . : :. . ..:..
XP_006 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV
70 80 90 100 110 120
120 130 140 150 160
pF1KB7 LPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSS--YTVPGY
.: :. .: . : .. . . .. : : .: : .: . .:
XP_006 ----CSNGPAPTDSQPPEDYSFGAGEE---EEEEEELQRMLPSLSLTDAVQSGPHMTPYS
130 140 150 160 170
170 180 190 200 210 220
pF1KB7 M--QDLEVEQALTP-ALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTS----E
. .:.. .: : .: : ... : . :: . : . . ..: :.. :
XP_006 LLKEDVKWPPTLQPPTLRPPTLQP--PTLQPPVVLGPPAPDP---SPLAPPPGNPAGFRE
180 190 200 210 220
230 240 250 260 270
pF1KB7 ATTDEDEEGKLPEDIMKLLEQSEWQPTNVDGKGYLLNEPGVQP-TSVYGDFSCKEEPE--
.. : : :: .. :: : :: : . : :.. :. . .:
XP_006 LLSEVLEPGPLPASLPPAGEQ--LLPD-------LLISPHMLPLTDLEIKFQYRGRPPRA
230 240 250 260 270
280 290 300 310 320
pF1KB7 --IDSPGGDIGLSLQRVFTDLKNMDATWLD-SLLTP-----VRLPSIQAIPCAP
:..: : :.: ....:: . :. : ::.:: . ::
XP_006 LTISNPHG------CRLF--YSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTN
280 290 300 310 320 330
XP_006 QLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLFSLEHF
340 350 360 370 380 390
>>NP_001092099 (OMIM: 607218,612245,612251) interferon r (514 aa)
initn: 376 init1: 324 opt: 382 Z-score: 365.8 bits: 76.6 E(85289): 1.2e-13
Smith-Waterman score: 385; 28.7% identity (52.5% similar) in 341 aa overlap (2-322:11-322)
10 20 30 40 50
pF1KB7 MPITRMRMRPWLEMQINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKD
: :.:..::: :.:: : ::: :.: :. .: :::.::..:: . . :
NP_001 MNQSIPVAPTPPRRVRLKPWLVAQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 ACLFRSWAIHTGRYKAGEKEPDPKTWKANFRCAMNSLPDIEEVKDQSRNKGSSAVRVYRM
.:..:: .::.: : : :: ::::.:::.:. :.. . : :. . ..:..
NP_001 NTIFKAWAKETGKYTEGVDEADPAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEV
70 80 90 100 110 120
120 130 140 150 160
pF1KB7 LPPLTKNQRKERKSKSSRDAKSKAKRKSCGDSSPDTFSDGLSSSTLPDDHSS--YTVPGY
.: :. .: . : .. . . .. : : .: : .: . .:
NP_001 ----CSNGPAPTDSQPPEDYSFGAGEE---EEEEEELQRMLPSLSLTDAVQSGPHMTPYS
130 140 150 160 170
170 180 190 200 210 220
pF1KB7 M--QDLEVEQALTP-ALSPCAVSSTLPDWHIPVEVVPDSTSDLYNFQVSPMPSTS----E
. .:.. .: : .: : ... : . :: . : . . ..: :.. :
NP_001 LLKEDVKWPPTLQPPTLRPPTLQP--PTLQPPVVLGPPAPDP---SPLAPPPGNPAGFRE
180 190 200 210 220
230 240 250 260 270
pF1KB7 ATTDEDEEGKLPEDIMKLLEQSEWQPTNVDGKGYLLNEPGVQP-TSVYGDFSCKEEPE--
.. : : :: .. :: : :: : . : :.. :. . .:
NP_001 LLSEVLEPGPLPASLPPAGEQ--LLPD-------LLISPHMLPLTDLEIKFQYRGRPPRA
230 240 250 260 270
280 290 300 310 320
pF1KB7 --IDSPGGDIGLSLQRVFTDLKNMDATWLD-SLLTP-----VRLPSIQAIPCAP
:..: : :.: ....:: . :. : ::.:: . ::
NP_001 LTISNPHG------CRLF--YSQLEATQEQVELFGPISLEQVRFPSPEDIPSDKQRFYTN
280 290 300 310 320 330
NP_001 QLLDVLDRGLILQLQGQDLYAIRLCQCKVFWSGPCASAHDSCPNPIQREVKTKLFSLEHF
340 350 360 370 380 390
325 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:51:22 2016 done: Sat Nov 5 14:51:24 2016
Total Scan time: 8.640 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]