FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6138, 135 aa
  1>>>pF1KE6138 135 - 135 aa - 135 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3433+/-0.000312; mu= 11.5997+/- 0.020
 mean_var=67.6457+/-13.756, 0's: 0 Z-trim(116.0): 3  B-trim: 0 in 0/55
 Lambda= 0.155939
 statistics sampled from 26857 (26860) to 26857 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.315), width:  16
 Scan time:  4.150

The best scores are:                                      opt bits E(85289)
NP_001012 (OMIM: 180472,612527) 40S ribosomal prot ( 135)  871 204.1 5.6e-53


>>NP_001012 (OMIM: 180472,612527) 40S ribosomal protein   (135 aa)
 initn: 871 init1: 871 opt: 871  Z-score: 1072.0  bits: 204.1 E(85289): 5.6e-53
Smith-Waterman score: 871; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135)

               10        20        30        40        50        60
pF1KE6 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 IQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVT
               70        80        90       100       110       120

              130     
pF1KE6 QPTVGMNFKTPRGPV
       :::::::::::::::
NP_001 QPTVGMNFKTPRGPV
              130     




135 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:47:20 2016 done: Tue Nov  8 09:47:21 2016
 Total Scan time:  4.150 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]