Result of FASTA (ccds) for
pFN21AB8711
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8711, 482 aa
1>>>pF1KB8711 482 - 482 aa - 482 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8167+/-0.000934; mu= 11.4007+/- 0.056
mean_var=102.6412+/-20.183, 0's: 0 Z-trim(107.5): 22 B-trim: 2 in 1/49
Lambda= 0.126594
statistics sampled from 9584 (9597) to 9584 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.666), E-opt: 0.2 (0.295), width: 16
Scan time: 2.910
The best scores are: opt bits E(32554)
CCDS64595.1 ICA1 gene_id:3382|Hs108|chr7 ( 482) 3204 595.8 3.3e-170
CCDS34602.1 ICA1 gene_id:3382|Hs108|chr7 ( 483) 3192 593.6 1.5e-169
CCDS2354.1 ICA1L gene_id:130026|Hs108|chr2 ( 482) 1335 254.5 1.9e-67
CCDS74632.1 ICA1L gene_id:130026|Hs108|chr2 ( 187) 833 162.6 3.3e-40
>>CCDS64595.1 ICA1 gene_id:3382|Hs108|chr7 (482 aa)
initn: 3204 init1: 3204 opt: 3204 Z-score: 3169.2 bits: 595.8 E(32554): 3.3e-170
Smith-Waterman score: 3204; 100.0% identity (100.0% similar) in 482 aa overlap (1-482:1-482)
10 20 30 40 50 60
pF1KB8 MSGHKCYPWDLQDRYAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MSGHKCYPWDLQDRYAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLE
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQELD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 FSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQELD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 PDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 PDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLHF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 WEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKEEKKKINQQESTDAAVQEPSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 WEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKEEKKKINQQESTDAAVQEPSQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 LISLEEENQRKESSSFKTEDGKSILSALDKGSTHTACSGPIDELLDMKSEEGACLGPVAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 LISLEEENQRKESSSFKTEDGKSILSALDKGSTHTACSGPIDELLDMKSEEGACLGPVAG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TPEPEGADKDDLLLLSEIFNASSLEEGEFSKEWAAVFGDGQVKEPVPTMALGEPDPKAQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 TPEPEGADKDDLLLLSEIFNASSLEEGEFSKEWAAVFGDGQVKEPVPTMALGEPDPKAQT
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 GSGFLPSQLLDQNMKDLQASLQEPAKAASDLTAWFSLFADLDPLSNPDAVGKTDKEHELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 GSGFLPSQLLDQNMKDLQASLQEPAKAASDLTAWFSLFADLDPLSNPDAVGKTDKEHELL
430 440 450 460 470 480
pF1KB8 NA
::
CCDS64 NA
>>CCDS34602.1 ICA1 gene_id:3382|Hs108|chr7 (483 aa)
initn: 3190 init1: 3155 opt: 3192 Z-score: 3157.4 bits: 593.6 E(32554): 1.5e-169
Smith-Waterman score: 3192; 99.8% identity (99.8% similar) in 483 aa overlap (1-482:1-483)
10 20 30 40 50
pF1KB8 MSGHKC-YPWDLQDRYAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKL
:::::: :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSGHKCSYPWDLQDRYAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKL
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB8 ELFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ELFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKAL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB8 CFSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 CFSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQEL
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB8 DPDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DPDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLH
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB8 FWEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKEEKKKINQQESTDAAVQEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 FWEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKEEKKKINQQESTDAAVQEPS
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB8 QLISLEEENQRKESSSFKTEDGKSILSALDKGSTHTACSGPIDELLDMKSEEGACLGPVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 QLISLEEENQRKESSSFKTEDGKSILSALDKGSTHTACSGPIDELLDMKSEEGACLGPVA
310 320 330 340 350 360
360 370 380 390 400 410
pF1KB8 GTPEPEGADKDDLLLLSEIFNASSLEEGEFSKEWAAVFGDGQVKEPVPTMALGEPDPKAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GTPEPEGADKDDLLLLSEIFNASSLEEGEFSKEWAAVFGDGQVKEPVPTMALGEPDPKAQ
370 380 390 400 410 420
420 430 440 450 460 470
pF1KB8 TGSGFLPSQLLDQNMKDLQASLQEPAKAASDLTAWFSLFADLDPLSNPDAVGKTDKEHEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TGSGFLPSQLLDQNMKDLQASLQEPAKAASDLTAWFSLFADLDPLSNPDAVGKTDKEHEL
430 440 450 460 470 480
480
pF1KB8 LNA
:::
CCDS34 LNA
>>CCDS2354.1 ICA1L gene_id:130026|Hs108|chr2 (482 aa)
initn: 1378 init1: 1212 opt: 1335 Z-score: 1324.4 bits: 254.5 E(32554): 1.9e-67
Smith-Waterman score: 1377; 49.5% identity (71.9% similar) in 501 aa overlap (12-482:6-482)
10 20 30 40 50 60
pF1KB8 MSGHKCYPWDLQDRYAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLE
: : ...::: .::.:::.:::.::::::::::::.:::::.::::::
CCDS23 MDSFGQPRPEDNQSVVRRMQKKYWKTKQVFIKATGKKEDEHLVASDAELDAKLE
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 LFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALC
.:::.:.:: .: : : :: :. .:.:::::: ::. :. .: :.:::::.:::::::
CCDS23 VFHSVQETCTELLKIIEKYQLRLNVISEEENELGLFLKFQAERDATQAGKMMDATGKALC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 FSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQELD
:..::::: .:: :..::: :: .::.::: .:.::::: :::::::::::::::::::
CCDS23 SSAKQRLALCTPLSRLKQEVATFSQRAVSDTLMTINRMEQARTEYRGALLWMKDVSQELD
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 PDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLHF
:: :::::::::: ::: .: .:::::::::::::::::::::.::: :.::: ::: :
CCDS23 PDTLKQMEKFRKVQMQVRNSKASFDKLKMDVCQKVDLLGASRCNMLSHSLTTYQRTLLGF
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB8 WEKTSHTMAAIHESFKGYQPYEFTTLKSLQDPMKKLVEKEEKKKINQQESTDAAVQEPSQ
:.::.. :. :::. :..::.:..::.::: .:. : .. ..:. ... ..
CCDS23 WKKTARMMSQIHEACIGFHPYDFVALKQLQDTPSKISEDNKDEQIG-----GFLTEQLNK
240 250 260 270 280
310 320 330 340 350 360
pF1KB8 LISLEEENQRKESSSFKTEDGKSILSALDKGSTHTACSGPIDELLDMKSEEGACLGPVAG
:. .:: .::..:.... . .: : ..: .. . ::. : :: .
CCDS23 LVLSDEE------ASFESEQANKDHN--EKHSQMREFGAP--QFSN--SENVAKDLPVDS
290 300 310 320 330
370 380 390 400 410
pF1KB8 TPEPEGAD-KDDLLLLSEIFNASSLEEGEFSKEWAAVFGDGQVKEPVPTMALGEPDPKAQ
:: : . .. .:.......: .::..: ..::. ... ..: .: :.
CCDS23 L---EGEDFEKEFSFLNNLLSSGSSSTSEFTQECQTAFGSPSASLTSQEPSMGS-EPLAH
340 350 360 370 380 390
420 430 440 450
pF1KB8 TGSGFLPSQLLD--------------QNMKDLQASL--------QEPAK-------AASD
. : ::::::.: :. ..: : : : : . .:
CCDS23 S-SRFLPSQLFDLGFHVAGAFNNWVSQEESELCLSHTDNQPVPSQSPKKLTRSPNNGNQD
400 410 420 430 440 450
460 470 480
pF1KB8 LTAWFSLFADLDPLSNPDAVGKTDKEHELLNA
..:::.:::::::::::::.:..: : ::::
CCDS23 MSAWFNLFADLDPLSNPDAIGHSDDE--LLNA
460 470 480
>>CCDS74632.1 ICA1L gene_id:130026|Hs108|chr2 (187 aa)
initn: 833 init1: 833 opt: 833 Z-score: 835.3 bits: 162.6 E(32554): 3.3e-40
Smith-Waterman score: 833; 69.8% identity (86.3% similar) in 182 aa overlap (12-193:6-187)
10 20 30 40 50 60
pF1KB8 MSGHKCYPWDLQDRYAQDKSVVNKMQQKYWETKQAFIKATGKKEDEHVVASDADLDAKLE
: : ...::: .::.:::.:::.::::::::::::.:::::.::::::
CCDS74 MDSFGQPRPEDNQSVVRRMQKKYWKTKQVFIKATGKKEDEHLVASDAELDAKLE
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 LFHSIQRTCLDLSKAIVLYQKRICFLSQEENELGKFLRSQGFQDKTRAGKMMQATGKALC
.:::.:.:: .: : : :: :. .:.:::::: ::. :. .: :.:::::.:::::::
CCDS74 VFHSVQETCTELLKIIEKYQLRLNVISEEENELGLFLKFQAERDATQAGKMMDATGKALC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 FSSQQRLALRNPLCRFHQEVETFRHRAISDTWLTVNRMEQCRTEYRGALLWMKDVSQELD
:..::::: .:: :..::: :: .::.::: .:.::::: :::::::::::::::::::
CCDS74 SSAKQRLALCTPLSRLKQEVATFSQRAVSDTLMTINRMEQARTEYRGALLWMKDVSQELD
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 PDLYKQMEKFRKVQTQVRLAKKNFDKLKMDVCQKVDLLGASRCNLLSHMLATYQTTLLHF
:: :::::::::
CCDS74 PDTLKQMEKFRKV
180
482 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 21:34:29 2016 done: Sat Nov 5 21:34:30 2016
Total Scan time: 2.910 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]