FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1551, 254 aa 1>>>pF1KE1551 254 - 254 aa - 254 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5783+/-0.000368; mu= 12.6350+/- 0.023 mean_var=68.2560+/-14.298, 0's: 0 Z-trim(113.1): 118 B-trim: 54 in 1/54 Lambda= 0.155240 statistics sampled from 22179 (22311) to 22179 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.638), E-opt: 0.2 (0.262), width: 16 Scan time: 6.240 The best scores are: opt bits E(85289) NP_002113 (OMIM: 146880,212750) HLA class II histo ( 255) 1489 342.5 4.4e-94 NP_064440 (OMIM: 613503) HLA class II histocompati ( 255) 1461 336.2 3.4e-92 XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA ( 206) 1173 271.7 7.4e-73 NP_001229453 (OMIM: 142880) HLA class II histocomp ( 260) 967 225.6 7e-59 NP_291032 (OMIM: 142880) HLA class II histocompati ( 260) 967 225.6 7e-59 NP_001229454 (OMIM: 142880) HLA class II histocomp ( 260) 967 225.6 7e-59 NP_002110 (OMIM: 142930) HLA class II histocompati ( 250) 942 220.0 3.3e-57 NP_061984 (OMIM: 142860) HLA class II histocompati ( 254) 886 207.4 2e-53 NP_006111 (OMIM: 142855) HLA class II histocompati ( 261) 324 81.6 1.6e-15 NP_001185787 (OMIM: 615161) HLA class II histocomp ( 227) 240 62.7 6.4e-10 XP_011512862 (OMIM: 615161) PREDICTED: HLA class I ( 256) 240 62.7 7.2e-10 NP_002109 (OMIM: 142856) HLA class II histocompati ( 263) 240 62.8 7.3e-10 NP_001287719 (OMIM: 615161) HLA class II histocomp ( 264) 239 62.5 8.6e-10 XP_005249108 (OMIM: 615161) PREDICTED: HLA class I ( 275) 239 62.5 8.9e-10 NP_002112 (OMIM: 142858) HLA class II histocompati ( 258) 230 60.5 3.4e-09 NP_002116 (OMIM: 604776) major histocompatibility ( 266) 227 59.8 5.6e-09 XP_011512864 (OMIM: 604776) PREDICTED: major histo ( 276) 227 59.9 5.7e-09 XP_011546040 (OMIM: 126200,142857,180300,181000) P ( 266) 224 59.2 8.9e-09 NP_001230894 (OMIM: 126200,142857,180300,181000) m ( 266) 224 59.2 8.9e-09 NP_002115 (OMIM: 126200,142857,180300,181000) majo ( 266) 217 57.6 2.6e-08 XP_011512863 (OMIM: 615161) PREDICTED: HLA class I ( 219) 214 56.9 3.5e-08 NP_620576 (OMIM: 104300,176100,176200,235200,61263 ( 260) 212 56.5 5.6e-08 NP_072049 (OMIM: 612735) major histocompatibility ( 266) 212 56.5 5.7e-08 NP_002114 (OMIM: 123400,126200,212750,604305) HLA ( 261) 210 56.0 7.7e-08 NP_002111 (OMIM: 600629) HLA class II histocompati ( 273) 208 55.6 1.1e-07 XP_016866304 (OMIM: 143110) PREDICTED: HLA class I ( 228) 204 54.7 1.7e-07 XP_011512866 (OMIM: 143110) PREDICTED: HLA class I ( 343) 206 55.2 1.8e-07 XP_016866303 (OMIM: 143110) PREDICTED: HLA class I ( 324) 204 54.7 2.3e-07 NP_061823 (OMIM: 143110) HLA class I histocompatib ( 346) 204 54.7 2.5e-07 XP_016866302 (OMIM: 143110) PREDICTED: HLA class I ( 388) 204 54.8 2.7e-07 XP_016866301 (OMIM: 143110) PREDICTED: HLA class I ( 420) 204 54.8 2.9e-07 XP_016866299 (OMIM: 143110) PREDICTED: HLA class I ( 435) 204 54.8 3e-07 NP_001091949 (OMIM: 143110) HLA class I histocompa ( 442) 204 54.8 3.1e-07 XP_016866300 (OMIM: 143110) PREDICTED: HLA class I ( 431) 198 53.4 7.6e-07 NP_620578 (OMIM: 104300,176100,176200,235200,61263 ( 325) 196 52.9 8.1e-07 XP_011512845 (OMIM: 104300,176100,176200,235200,61 ( 348) 196 53.0 8.6e-07 NP_000401 (OMIM: 104300,176100,176200,235200,61263 ( 348) 196 53.0 8.6e-07 NP_620577 (OMIM: 104300,176100,176200,235200,61263 ( 246) 194 52.4 8.7e-07 NP_620575 (OMIM: 104300,176100,176200,235200,61263 ( 334) 195 52.7 9.7e-07 NP_620579 (OMIM: 104300,176100,176200,235200,61263 ( 168) 189 51.2 1.4e-06 NP_001287678 (OMIM: 104300,176100,176200,235200,61 ( 337) 191 51.8 1.8e-06 NP_620572 (OMIM: 104300,176100,176200,235200,61263 ( 242) 189 51.3 1.9e-06 NP_620573 (OMIM: 104300,176100,176200,235200,61263 ( 256) 189 51.3 2e-06 NP_064455 (OMIM: 146770,613500) immunoglobulin lam ( 213) 187 50.8 2.3e-06 XP_011528471 (OMIM: 146770,613500) PREDICTED: immu ( 214) 187 50.8 2.3e-06 NP_001129491 (OMIM: 601437) IgG receptor FcRn larg ( 365) 186 50.7 4.3e-06 NP_004098 (OMIM: 601437) IgG receptor FcRn large s ( 365) 186 50.7 4.3e-06 XP_005258714 (OMIM: 601437) PREDICTED: IgG recepto ( 225) 183 50.0 4.5e-06 XP_011507765 (OMIM: 600764) PREDICTED: major histo ( 254) 178 48.9 1.1e-05 NP_001181928 (OMIM: 600764) major histocompatibili ( 296) 178 48.9 1.2e-05 >>NP_002113 (OMIM: 146880,212750) HLA class II histocomp (255 aa) initn: 1479 init1: 1065 opt: 1489 Z-score: 1810.0 bits: 342.5 E(85289): 4.4e-94 Smith-Waterman score: 1489; 89.0% identity (93.7% similar) in 255 aa overlap (1-254:1-255) 10 20 30 40 50 60 pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV :::::::.::::::::::::::::::::::::: :::::: ::::::::::::::::::: NP_002 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK :: ::::.: : . .: :::: :: :.:: ::::: .::: ::::::::::::::::: NP_002 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL ::::::::: :::::::::::::::::::::.::::::::::::::::::::::::::.: NP_002 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII :::.: :::::::::::.:::::::::::::::::::::::::::::::.:::::::::: NP_002 PSADEIYDCKVEHWGLDQPLLKHWEPEIPAPMSELTETVVCALGLSVGLMGIVVGTVFII 190 200 210 220 230 240 240 250 pF1KE1 RGLRSVGASRHQGPL .:::::::::::::: NP_002 QGLRSVGASRHQGPL 250 >>NP_064440 (OMIM: 613503) HLA class II histocompatibili (255 aa) initn: 1460 init1: 1027 opt: 1461 Z-score: 1776.1 bits: 336.2 E(85289): 3.4e-92 Smith-Waterman score: 1461; 86.3% identity (94.5% similar) in 255 aa overlap (1-254:1-255) 10 20 30 40 50 60 pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV :::::::.:::::::.:::::::::::::::::::::.:::.::::::::::::::.::: NP_064 MILNKALLLGALALTAVMSPCGGEDIVADHVASYGVNFYQSHGPSGQYTHEFDGDEEFYV 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK :: ::::: ::.. .: :::: :: :.:: ::.:. ....:::::::::::::::::: NP_064 DLETKETVWQLPMFSKFISFDPQSALRNMAVGKHTLEFMMRQSNSTAATNEVPEVTVFSK 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL :::::::: ::::::::::::::::::::::::::::::::::::::::::::::::.: NP_064 FPVTLGQPNTLICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTFL 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII :::.: :::::::::::.::::::::::::::::::::.::::::::::.:::::::::: NP_064 PSADEIYDCKVEHWGLDEPLLKHWEPEIPAPMSELTETLVCALGLSVGLMGIVVGTVFII 190 200 210 220 230 240 240 250 pF1KE1 RGLRSVGASRHQGPL .:::::::::::: : NP_064 QGLRSVGASRHQGLL 250 >>XP_006715142 (OMIM: 146880,212750) PREDICTED: HLA clas (206 aa) initn: 1163 init1: 749 opt: 1173 Z-score: 1429.0 bits: 271.7 E(85289): 7.4e-73 Smith-Waterman score: 1173; 87.3% identity (92.2% similar) in 204 aa overlap (1-203:1-204) 10 20 30 40 50 60 pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV :::::::.::::::::::::::::::::::::: :::::: ::::::::::::::::::: XP_006 MILNKALLLGALALTTVMSPCGGEDIVADHVASCGVNLYQFYGPSGQYTHEFDGDEQFYV 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DLGRKETVWCLPVLRQFR-FDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK :: ::::.: : . .: :::: :: :.:: ::::: .::: ::::::::::::::::: XP_006 DLERKETAWRWPEFSKFGGFDPQGALRNMAVAKHNLNIMIKRYNSTAATNEVPEVTVFSK 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL ::::::::: :::::::::::::::::::::.::::::::::::::::::::::::::.: XP_006 SPVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFL 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII :::.: :::::::::::.:::::: XP_006 PSADEIYDCKVEHWGLDQPLLKHWVE 190 200 >>NP_001229453 (OMIM: 142880) HLA class II histocompatib (260 aa) initn: 896 init1: 781 opt: 967 Z-score: 1178.1 bits: 225.6 E(85289): 7e-59 Smith-Waterman score: 967; 58.0% identity (79.6% similar) in 255 aa overlap (1-254:7-260) 10 20 30 40 50 pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDG :. .:..: ::.:. ..: :. : ::::..:.. . :.. :.:.. ::: NP_001 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAA-FVQTHRPTGEFMFEFDE 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DEQFYVDLGRKETVWCLPVLRQ-FRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPE ::.::::: .::::: : . : : :. : .:.:::.:..:::.::.::: : :::. :: NP_001 DEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 VTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKI :::: : :: ::::: ::: .:..::::.:.::: ::. :::::.:. :: ..:.:: :. NP_001 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 SYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVV :::..::::. :::.:::::::.::::::: . : : : ::::.::::: .:::::.: NP_001 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV 180 190 200 210 220 230 240 250 pF1KE1 GTVFIIRGLRSVGASRHQGPL :::.::..::: : :: : NP_001 GTVLIIKSLRSGHDPRAQGTL 240 250 260 >>NP_291032 (OMIM: 142880) HLA class II histocompatibili (260 aa) initn: 896 init1: 781 opt: 967 Z-score: 1178.1 bits: 225.6 E(85289): 7e-59 Smith-Waterman score: 967; 58.0% identity (79.6% similar) in 255 aa overlap (1-254:7-260) 10 20 30 40 50 pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDG :. .:..: ::.:. ..: :. : ::::..:.. . :.. :.:.. ::: NP_291 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAA-FVQTHRPTGEFMFEFDE 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DEQFYVDLGRKETVWCLPVLRQ-FRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPE ::.::::: .::::: : . : : :. : .:.:::.:..:::.::.::: : :::. :: NP_291 DEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 VTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKI :::: : :: ::::: ::: .:..::::.:.::: ::. :::::.:. :: ..:.:: :. NP_291 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 SYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVV :::..::::. :::.:::::::.::::::: . : : : ::::.::::: .:::::.: NP_291 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV 180 190 200 210 220 230 240 250 pF1KE1 GTVFIIRGLRSVGASRHQGPL :::.::..::: : :: : NP_291 GTVLIIKSLRSGHDPRAQGTL 240 250 260 >>NP_001229454 (OMIM: 142880) HLA class II histocompatib (260 aa) initn: 896 init1: 781 opt: 967 Z-score: 1178.1 bits: 225.6 E(85289): 7e-59 Smith-Waterman score: 967; 58.0% identity (79.6% similar) in 255 aa overlap (1-254:7-260) 10 20 30 40 50 pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDG :. .:..: ::.:. ..: :. : ::::..:.. . :.. :.:.. ::: NP_001 MRPEDRMFHIRAVILRALSLAFLLSLRGAGAIKADHVSTYAA-FVQTHRPTGEFMFEFDE 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DEQFYVDLGRKETVWCLPVLRQ-FRFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPE ::.::::: .::::: : . : : :. : .:.:::.:..:::.::.::: : :::. :: NP_001 DEMFYVDLDKKETVWHLEEFGQAFSFEAQGGLANIAILNNNLNTLIQRSNHTQATNDPPE 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 VTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKI :::: : :: ::::: ::: .:..::::.:.::: ::. :::::.:. :: ..:.:: :. NP_001 VTVFPKEPVELGQPNTLICHIDKFFPPVLNVTWLCNGELVTEGVAESLFLPRTDYSFHKF 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 SYLTLLPSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVV :::..::::. :::.:::::::.::::::: . : : : ::::.::::: .:::::.: NP_001 HYLTFVPSAEDFYDCRVEHWGLDQPLLKHWEAQEPIQMPETTETVLCALGLVLGLVGIIV 180 190 200 210 220 230 240 250 pF1KE1 GTVFIIRGLRSVGASRHQGPL :::.::..::: : :: : NP_001 GTVLIIKSLRSGHDPRAQGTL 240 250 260 >>NP_002110 (OMIM: 142930) HLA class II histocompatibili (250 aa) initn: 962 init1: 717 opt: 942 Z-score: 1148.1 bits: 220.0 E(85289): 3.3e-57 Smith-Waterman score: 942; 58.3% identity (79.3% similar) in 242 aa overlap (1-241:1-242) 10 20 30 40 50 60 pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV : : .:.:: .: :..:: . :::..::: .::::: :::.::::: .. : : NP_002 MALRAGLVLGFHTLMTLLSPQEAGATKADHMGSYGPAFYQSYGASGQFTHEFDEEQLFSV 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK :: ..:.:: :: . .: ::::: .:..::..: .:. :..::: . : : :.:::. : NP_002 DLKKSEAVWRLPEFGDFARFDPQGGLAGIAAIKAHLDILVERSNRSRAINVPPRVTVLPK 70 80 90 100 110 120 120 130 140 150 160 170 pF1KE1 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL : : :::::::::.::::::::.::::: ::..:::::..::: :. :: : :. :: .. NP_002 SRVELGQPNILICIVDNIFPPVINITWLRNGQTVTEGVAQTSFYSQPDHLFRKFHYLPFV 130 140 150 160 170 180 180 190 200 210 220 230 pF1KE1 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII ::::. :::.::::::: :::.::: ..: : . ::.::::::..::::..::::.:: NP_002 PSAEDVYDCQVEHWGLDAPLLRHWELQVPIPPPDAMETLVCALGLAIGLVGFLVGTVLII 190 200 210 220 230 240 240 250 pF1KE1 RGLRSVGASRHQGPL : NP_002 MGTYVSSVPR 250 >>NP_061984 (OMIM: 142860) HLA class II histocompatibili (254 aa) initn: 863 init1: 753 opt: 886 Z-score: 1080.2 bits: 207.4 E(85289): 2e-53 Smith-Waterman score: 886; 52.9% identity (76.9% similar) in 255 aa overlap (1-254:1-254) 10 20 30 40 50 60 pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYV : .. . .:: . ....:: . : .:: ...: . ::.. .::::: :.: NP_061 MAISGVPVLGFFIIAVLMSAQESWAIKEEHVI-IQAEFYLNPDQSGEFMFDFDGDEIFHV 10 20 30 40 50 70 80 90 100 110 pF1KE1 DLGRKETVWCLPVLRQF-RFDPQFALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSK :...::::: : . .: :. : ::.:::: : ::. . :::: : :: :::::... NP_061 DMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTN 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 SPVTLGQPNILICLVDNIFPPVVNITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLL ::: : .::.:::..:.. :::::.::: ::. :: ::::: :: . :: : :. :: .: NP_061 SPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFL 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE1 PSAEESYDCKVEHWGLDKPLLKHWEPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFII ::.:. :::.:::::::.::::::: . :.:. : ::.:::::::.::::::..::.::: NP_061 PSTEDVYDCRVEHWGLDEPLLKHWEFDAPSPLPETTENVVCALGLTVGLVGIIIGTIFII 180 190 200 210 220 230 240 250 pF1KE1 RGLRSVGASRHQGPL .:::. .:....::: NP_061 KGLRKSNAAERRGPL 240 250 >>NP_006111 (OMIM: 142855) HLA class II histocompatibili (261 aa) initn: 276 init1: 135 opt: 324 Z-score: 399.8 bits: 81.6 E(85289): 1.6e-15 Smith-Waterman score: 324; 29.7% identity (59.3% similar) in 246 aa overlap (7-239:20-252) 10 20 30 40 pF1KE1 MILNKALMLGALALTTVMSPCGGEDIVADHVASYGVNLYQSYGPSGQ :. . :. . .: .:. .:. . : :. .:: NP_006 MGHEQNQGAALLQMLPLLWLLPHSWAVPEAPTPMWPDDL-QNHTFLHTVYC-QDGSPSVG 10 20 30 40 50 50 60 70 80 90 pF1KE1 YTHEFDGDEQFYVDLGRKETVWCLPVLRQFR----------FDPQFALTNIAVLKHNLNS .. .: :. :. :.... : :: . .. :: .: : . .:.. NP_006 LSEAYDEDQLFFFDFSQNTRVPRLPEFADWAQEQGDAPAILFDKEFCEWMIQQIGPKLDG 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE1 LIKRSNSTAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVNITWLSNGHSV-TEG : : . : . ::. .:. .:.:: :.:.:.:.:::.....: . ::: .:: NP_006 KIPVSRG------FPIAEVFTLKPLEFGKPNTLVCFVSNLFPPMLTVNW--QHHSVPVEG 120 130 140 150 160 170 160 170 180 190 200 210 pF1KE1 VSETSFLSKSDH-SFFKISYLTLLPSAEESYDCKVEHWGLDK-PLLKHWEPEIPAPMSEL . : :.: : :: .:::.. : . ..: : : .:. . .: :. : :.: NP_006 FGPT-FVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHE-IDRYTAIAYWVPRNALP-SDL 180 190 200 210 220 220 230 240 250 pF1KE1 TETVVCALGLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL :.:.:......:..::.:: :.:: NP_006 LENVLCGVAFGLGVLGIIVGIVLIIYFRKPCSGD 230 240 250 260 >>NP_001185787 (OMIM: 615161) HLA class II histocompatib (227 aa) initn: 150 init1: 132 opt: 240 Z-score: 299.0 bits: 62.7 E(85289): 6.4e-10 Smith-Waterman score: 240; 26.7% identity (59.0% similar) in 161 aa overlap (54-214:73-226) 30 40 50 60 70 80 pF1KE1 EDIVADHVASYGVNLYQSYGPSGQYTHEFDGDEQFYVDLGRKETVWCLPVLRQFRFDPQF :. : ..:::. : ..: . . NP_001 CYFTNGTERVRGVARYIYNREEYGRFDSDVGEFQAVTELGRSIEDWN--NYKDFLEQERA 50 60 70 80 90 100 90 100 110 120 130 140 pF1KE1 ALTNIAVLKHNLNSLIKRSNSTAATNEVPEVTVFSKSPVTLGQPNILICLVDNIFPPVVN :. .. .:: .. .. .: . : ::. . .:.. :.:.: : ...: .. NP_001 AVDKVC--RHNYEAELR---TTLQRQVEPTVTISPSRTEALNHHNLLVCSVTDFYPAQIK 110 120 130 140 150 150 160 170 180 190 200 pF1KE1 ITWLSNGHSVTEGVSETSFLSKSDHSFFKISYLTLLPSAEESYDCKVEHWGLDKPLLKHW . :. : . : :: ::.. ..: .: . .: . :. . : :.::: .:..:. .: NP_001 VRWFRNDQEETAGVVSTSLIRNGDWTFQILVMLEITPQRGDIYTCQVEHPSLQSPITVEW 160 170 180 190 200 210 210 220 230 240 250 pF1KE1 EPEIPAPMSELTETVVCALGLSVGLVGIVVGTVFIIRGLRSVGASRHQGPL .:. : : . : NP_001 RPRGPPPAGLLH 220 254 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:08:46 2016 done: Mon Nov 7 02:08:47 2016 Total Scan time: 6.240 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]