Result of FASTA (omim) for pFN21AE1401
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1401, 114 aa
  1>>>pF1KE1401 114 - 114 aa - 114 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3060+/-0.000254; mu= 16.3999+/- 0.016
 mean_var=61.4809+/-12.216, 0's: 0 Z-trim(121.3): 37  B-trim: 157 in 1/55
 Lambda= 0.163570
 statistics sampled from 37582 (37622) to 37582 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.441), width:  16
 Scan time:  4.240

The best scores are:                                      opt bits E(85289)
NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 p ( 114)  741 181.9   2e-46
NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114)  599 148.3 2.4e-36
NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107)  313 80.8 4.8e-16
NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107)  297 77.1 6.6e-15
NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107)  293 76.1 1.3e-14
NP_002695 (OMIM: 121010) platelet basic protein pr ( 128)  284 74.1 6.3e-14
NP_002610 (OMIM: 173460) platelet factor 4 precurs ( 101)  260 68.3 2.7e-12
XP_005265753 (OMIM: 173460) PREDICTED: platelet fa ( 110)  237 62.9 1.2e-10
NP_002611 (OMIM: 173461) platelet factor 4 variant ( 104)  233 61.9 2.3e-10
NP_000575 (OMIM: 146930) interleukin-8 precursor [ (  99)  220 58.9 1.8e-09
NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 p ( 125)  207 55.9 1.8e-08
NP_001556 (OMIM: 147310) C-X-C motif chemokine 10  (  98)  159 44.5   4e-05
NP_006410 (OMIM: 605149) C-X-C motif chemokine 13  ( 109)  154 43.3 9.7e-05
XP_006714126 (OMIM: 605149) PREDICTED: C-X-C motif ( 109)  154 43.3 9.7e-05
NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119)  133 38.4  0.0032
NP_006265 (OMIM: 602227) C-C motif chemokine 19 pr (  98)  132 38.1  0.0033
XP_016879020 (OMIM: 602957) PREDICTED: C-C motif c (  93)  126 36.6  0.0084
NP_002981 (OMIM: 602957) C-C motif chemokine 22 pr (  93)  126 36.6  0.0084


>>NP_002985 (OMIM: 600324) C-X-C motif chemokine 5 precu  (114 aa)
 initn: 741 init1: 741 opt: 741  Z-score: 954.5  bits: 181.9 E(85289): 2e-46
Smith-Waterman score: 741; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KE1 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE1 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
               70        80        90       100       110    

>>NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 precu  (114 aa)
 initn: 645 init1: 599 opt: 599  Z-score: 773.4  bits: 148.3 E(85289): 2.4e-36
Smith-Waterman score: 599; 79.8% identity (93.0% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KE1 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP
       ::: :::::::::::.::::::.:::::: :::.:::::..::: ::::.::..:  :.:
NP_002 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE1 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
       : :..::::  :::::::::::::::::..::::::::::::::::::.:::.:
NP_002 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
               70        80        90       100       110    

>>NP_001502 (OMIM: 155730) growth-regulated alpha protei  (107 aa)
 initn: 354 init1: 283 opt: 313  Z-score: 409.0  bits: 80.8 E(85289): 4.8e-16
Smith-Waterman score: 313; 48.2% identity (76.4% similar) in 110 aa overlap (6-114:2-107)

               10         20        30        40        50         
pF1KE1 MSLLSSRAARVPGPSSS-LCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVH
            .:::   .::.  :  . .:::::.  :  : ::  :.:  :::: :::: ::.:
NP_001     MARAALSAAPSNPRLLRVALLLLLLVAAGRRA-AG--ASVATELRCQCLQTLQGIH
                   10        20        30           40        50   

      60        70        80        90       100       110    
pF1KE1 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
       :: :....: . ::.:...::.:.::::.. ::.: .:..::.:.:.:.. .: :
NP_001 PKNIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNS-DKSN
            60        70        80        90       100        

>>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu  (107 aa)
 initn: 315 init1: 283 opt: 297  Z-score: 388.6  bits: 77.1 E(85289): 6.6e-15
Smith-Waterman score: 297; 46.9% identity (76.5% similar) in 98 aa overlap (14-111:10-105)

               10        20        30        40        50        60
pF1KE1 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP
                    ::.     ..:::::   .   .::  :.:. :::: :::: ::.: 
NP_002     MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAG--ASVVTELRCQCLQTLQGIHL
                   10        20        30          40        50    

               70        80        90       100       110    
pF1KE1 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
       : :....: . ::.:...::.:.:::::. ::.: .:...:.:.:::. :.   
NP_002 KNIQSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN 
           60        70        80        90       100        

>>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu  (107 aa)
 initn: 313 init1: 270 opt: 293  Z-score: 383.5  bits: 76.1 E(85289): 1.3e-14
Smith-Waterman score: 293; 44.3% identity (76.4% similar) in 106 aa overlap (6-110:2-104)

               10         20        30        40        50         
pF1KE1 MSLLSSRAARVPGPSSS-LCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVH
            .::.   .::.  :  . .:::::.  .  :...: :.   :::: :::: ::.:
NP_002     MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLAT---ELRCQCLQTLQGIH
                   10        20        30           40        50   

      60        70        80        90       100       110    
pF1KE1 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
        : :....: . ::.:...::.:.::::.. ::.: .:..::.:.:.: .:    
NP_002 LKNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN 
            60        70        80        90       100        

>>NP_002695 (OMIM: 121010) platelet basic protein prepro  (128 aa)
 initn: 327 init1: 284 opt: 284  Z-score: 371.0  bits: 74.1 E(85289): 6.3e-14
Smith-Waterman score: 284; 56.2% identity (90.6% similar) in 64 aa overlap (46-109:60-123)

          20        30        40        50        60        70     
pF1KE1 SSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHPKMISNLQVFAIGPQC
                                     ::::.:..::.:.::: :..:.:.. : .:
NP_002 LTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSLEVIGKGTHC
      30        40        50        60        70        80         

          80        90       100       110    
pF1KE1 SKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
       ..:::.:.::.:..:::::.:: .::..:: : :     
NP_002 NQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
      90       100       110       120        

>>NP_002610 (OMIM: 173460) platelet factor 4 precursor [  (101 aa)
 initn: 240 init1: 199 opt: 260  Z-score: 341.7  bits: 68.3 E(85289): 2.7e-12
Smith-Waterman score: 260; 40.2% identity (75.3% similar) in 97 aa overlap (15-108:4-100)

               10        20           30        40        50       
pF1KE1 MSLLSSRAARVPGPSSSLCAL---LVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQG
                     ....::    :..: ::  :  .: :.  :    .:.:.:..::. 
NP_002            MSSAAGFCASRPGLLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQ
                          10        20        30        40         

        60        70        80        90       100       110    
pF1KE1 VHPKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
       :.:. :..:.:.  ::.:  ....:.::::..:::: .::. ::.:.:.:.      
NP_002 VRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES     
      50        60        70        80        90       100      

>>XP_005265753 (OMIM: 173460) PREDICTED: platelet factor  (110 aa)
 initn: 244 init1: 199 opt: 237  Z-score: 311.9  bits: 62.9 E(85289): 1.2e-10
Smith-Waterman score: 237; 46.0% identity (87.3% similar) in 63 aa overlap (46-108:47-109)

          20        30        40        50        60        70     
pF1KE1 SSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHPKMISNLQVFAIGPQC
                                     .:.:.:..::. :.:. :..:.:.  ::.:
XP_005 VPGAAPAPPTWLEQLLSGGGVIYAEAEEDGDLQCLCVKTTSQVRPRHITSLEVIKAGPHC
         20        30        40        50        60        70      

          80        90       100       110    
pF1KE1 SKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
         ....:.::::..:::: .::. ::.:.:.:.      
XP_005 PTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES     
         80        90       100       110     

>>NP_002611 (OMIM: 173461) platelet factor 4 variant pre  (104 aa)
 initn: 206 init1: 174 opt: 233  Z-score: 307.1  bits: 61.9 E(85289): 2.3e-10
Smith-Waterman score: 233; 38.8% identity (68.0% similar) in 103 aa overlap (6-108:2-103)

               10        20        30        40        50        60
pF1KE1 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP
            : :::     ..   .: : :::  :  .: :   :    .:.:.:..::. :.:
NP_002     MSSAARSRLTRATRQEMLFLALLLL-PVVVAFARAEAEEDGDLQCLCVKTTSQVRP
                   10        20         30        40        50     

               70        80        90       100       110    
pF1KE1 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
       . :..:.:.  ::.:  ....:.::::..:::: .: . ::.:.. :.      
NP_002 RHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQALLYKKIIKEHLES     
          60        70        80        90       100         

>>NP_000575 (OMIM: 146930) interleukin-8 precursor [Homo  (99 aa)
 initn: 242 init1: 174 opt: 220  Z-score: 290.8  bits: 58.9 E(85289): 1.8e-09
Smith-Waterman score: 220; 34.0% identity (77.7% similar) in 94 aa overlap (15-107:2-93)

               10        20        30        40        50          
pF1KE1 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQT-TQGVH
                     .:.: . :.  .:..     ... : .:  .:::: :..: ..  :
NP_000              MTSKLAVALLAAFLISAALCEGAVLPRSA--KELRCQCIKTYSKPFH
                            10        20          30        40     

      60        70        80        90       100       110    
pF1KE1 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
       ::.:..:.:.  ::.:...:....:..:.:.::::.  ....:..:.:       
NP_000 PKFIKELRVIESGPHCANTEIIVKLSDGRELCLDPKENWVQRVVEKFLKRAENS 
          50        60        70        80        90          




114 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:09:54 2016 done: Mon Nov  7 02:09:55 2016
 Total Scan time:  4.240 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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