FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1401, 114 aa 1>>>pF1KE1401 114 - 114 aa - 114 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7680+/-0.000523; mu= 13.7623+/- 0.032 mean_var=63.5875+/-12.607, 0's: 0 Z-trim(114.8): 31 B-trim: 133 in 1/51 Lambda= 0.160838 statistics sampled from 15280 (15312) to 15280 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.47), width: 16 Scan time: 1.750 The best scores are: opt bits E(32554) CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4 ( 114) 741 179.1 5.2e-46 CCDS3560.1 CXCL6 gene_id:6372|Hs108|chr4 ( 114) 599 146.1 4.3e-36 CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4 ( 107) 313 79.8 3.9e-16 CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4 ( 107) 297 76.0 5.1e-15 CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4 ( 107) 293 75.1 9.7e-15 CCDS3563.1 PPBP gene_id:5473|Hs108|chr4 ( 128) 284 73.1 4.7e-14 CCDS3562.1 PF4 gene_id:5196|Hs108|chr4 ( 101) 260 67.4 1.9e-12 >>CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4 (114 aa) initn: 741 init1: 741 opt: 741 Z-score: 939.6 bits: 179.1 E(32554): 5.2e-46 Smith-Waterman score: 741; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114) 10 20 30 40 50 60 pF1KE1 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN :::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS34 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN 70 80 90 100 110 >>CCDS3560.1 CXCL6 gene_id:6372|Hs108|chr4 (114 aa) initn: 645 init1: 599 opt: 599 Z-score: 761.5 bits: 146.1 E(32554): 4.3e-36 Smith-Waterman score: 599; 79.8% identity (93.0% similar) in 114 aa overlap (1-114:1-114) 10 20 30 40 50 60 pF1KE1 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP ::: :::::::::::.::::::.:::::: :::.:::::..::: ::::.::..: :.: CCDS35 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN : :..:::: :::::::::::::::::..::::::::::::::::::.:::.: CCDS35 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN 70 80 90 100 110 >>CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4 (107 aa) initn: 354 init1: 283 opt: 313 Z-score: 403.2 bits: 79.8 E(32554): 3.9e-16 Smith-Waterman score: 313; 48.2% identity (76.4% similar) in 110 aa overlap (6-114:2-107) 10 20 30 40 50 pF1KE1 MSLLSSRAARVPGPSSS-LCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVH .::: .::. : . .:::::. : : :: :.: :::: :::: ::.: CCDS47 MARAALSAAPSNPRLLRVALLLLLLVAAGRRA-AG--ASVATELRCQCLQTLQGIH 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN :: :....: . ::.:...::.:.::::.. ::.: .:..::.:.:.:.. .: : CCDS47 PKNIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNS-DKSN 60 70 80 90 100 >>CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4 (107 aa) initn: 315 init1: 283 opt: 297 Z-score: 383.1 bits: 76.0 E(32554): 5.1e-15 Smith-Waterman score: 297; 46.9% identity (76.5% similar) in 98 aa overlap (14-111:10-105) 10 20 30 40 50 60 pF1KE1 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP ::. ..::::: . .:: :.:. :::: :::: ::.: CCDS34 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAG--ASVVTELRCQCLQTLQGIHL 10 20 30 40 50 70 80 90 100 110 pF1KE1 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN : :....: . ::.:...::.:.:::::. ::.: .:...:.:.:::. :. CCDS34 KNIQSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN 60 70 80 90 100 >>CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4 (107 aa) initn: 313 init1: 270 opt: 293 Z-score: 378.1 bits: 75.1 E(32554): 9.7e-15 Smith-Waterman score: 293; 44.3% identity (76.4% similar) in 106 aa overlap (6-110:2-104) 10 20 30 40 50 pF1KE1 MSLLSSRAARVPGPSSS-LCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVH .::. .::. : . .:::::. . :...: :. :::: :::: ::.: CCDS34 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLAT---ELRCQCLQTLQGIH 10 20 30 40 50 60 70 80 90 100 110 pF1KE1 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN : :....: . ::.:...::.:.::::.. ::.: .:..::.:.:.: .: CCDS34 LKNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN 60 70 80 90 100 >>CCDS3563.1 PPBP gene_id:5473|Hs108|chr4 (128 aa) initn: 327 init1: 284 opt: 284 Z-score: 365.8 bits: 73.1 E(32554): 4.7e-14 Smith-Waterman score: 284; 56.2% identity (90.6% similar) in 64 aa overlap (46-109:60-123) 20 30 40 50 60 70 pF1KE1 SSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHPKMISNLQVFAIGPQC ::::.:..::.:.::: :..:.:.. : .: CCDS35 LTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSLEVIGKGTHC 30 40 50 60 70 80 80 90 100 110 pF1KE1 SKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN ..:::.:.::.:..:::::.:: .::..:: : : CCDS35 NQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD 90 100 110 120 >>CCDS3562.1 PF4 gene_id:5196|Hs108|chr4 (101 aa) initn: 240 init1: 199 opt: 260 Z-score: 337.1 bits: 67.4 E(32554): 1.9e-12 Smith-Waterman score: 260; 40.2% identity (75.3% similar) in 97 aa overlap (15-108:4-100) 10 20 30 40 50 pF1KE1 MSLLSSRAARVPGPSSSLCAL---LVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQG ....:: :..: :: : .: :. : .:.:.:..::. CCDS35 MSSAAGFCASRPGLLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQ 10 20 30 40 60 70 80 90 100 110 pF1KE1 VHPKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN :.:. :..:.:. ::.: ....:.::::..:::: .::. ::.:.:.:. CCDS35 VRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES 50 60 70 80 90 100 114 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:09:54 2016 done: Mon Nov 7 02:09:54 2016 Total Scan time: 1.750 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]