Result of FASTA (ccds) for pFN21AE1401
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1401, 114 aa
  1>>>pF1KE1401 114 - 114 aa - 114 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.7680+/-0.000523; mu= 13.7623+/- 0.032
 mean_var=63.5875+/-12.607, 0's: 0 Z-trim(114.8): 31  B-trim: 133 in 1/51
 Lambda= 0.160838
 statistics sampled from 15280 (15312) to 15280 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.821), E-opt: 0.2 (0.47), width:  16
 Scan time:  1.750

The best scores are:                                      opt bits E(32554)
CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4          ( 114)  741 179.1 5.2e-46
CCDS3560.1 CXCL6 gene_id:6372|Hs108|chr4           ( 114)  599 146.1 4.3e-36
CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4          ( 107)  313 79.8 3.9e-16
CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4          ( 107)  297 76.0 5.1e-15
CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4          ( 107)  293 75.1 9.7e-15
CCDS3563.1 PPBP gene_id:5473|Hs108|chr4            ( 128)  284 73.1 4.7e-14
CCDS3562.1 PF4 gene_id:5196|Hs108|chr4             ( 101)  260 67.4 1.9e-12


>>CCDS34006.1 CXCL5 gene_id:6374|Hs108|chr4               (114 aa)
 initn: 741 init1: 741 opt: 741  Z-score: 939.6  bits: 179.1 E(32554): 5.2e-46
Smith-Waterman score: 741; 100.0% identity (100.0% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KE1 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE1 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
               70        80        90       100       110    

>>CCDS3560.1 CXCL6 gene_id:6372|Hs108|chr4                (114 aa)
 initn: 645 init1: 599 opt: 599  Z-score: 761.5  bits: 146.1 E(32554): 4.3e-36
Smith-Waterman score: 599; 79.8% identity (93.0% similar) in 114 aa overlap (1-114:1-114)

               10        20        30        40        50        60
pF1KE1 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP
       ::: :::::::::::.::::::.:::::: :::.:::::..::: ::::.::..:  :.:
CCDS35 MSLPSSRAARVPGPSGSLCALLALLLLLTPPGPLASAGPVSAVLTELRCTCLRVTLRVNP
               10        20        30        40        50        60

               70        80        90       100       110    
pF1KE1 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
       : :..::::  :::::::::::::::::..::::::::::::::::::.:::.:
CCDS35 KTIGKLQVFPAGPQCSKVEVVASLKNGKQVCLDPEAPFLKKVIQKILDSGNKKN
               70        80        90       100       110    

>>CCDS47074.1 CXCL1 gene_id:2919|Hs108|chr4               (107 aa)
 initn: 354 init1: 283 opt: 313  Z-score: 403.2  bits: 79.8 E(32554): 3.9e-16
Smith-Waterman score: 313; 48.2% identity (76.4% similar) in 110 aa overlap (6-114:2-107)

               10         20        30        40        50         
pF1KE1 MSLLSSRAARVPGPSSS-LCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVH
            .:::   .::.  :  . .:::::.  :  : ::  :.:  :::: :::: ::.:
CCDS47     MARAALSAAPSNPRLLRVALLLLLLVAAGRRA-AG--ASVATELRCQCLQTLQGIH
                   10        20        30           40        50   

      60        70        80        90       100       110    
pF1KE1 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
       :: :....: . ::.:...::.:.::::.. ::.: .:..::.:.:.:.. .: :
CCDS47 PKNIQSVNVKSPGPHCAQTEVIATLKNGRKACLNPASPIVKKIIEKMLNS-DKSN
            60        70        80        90       100        

>>CCDS34007.1 CXCL3 gene_id:2921|Hs108|chr4               (107 aa)
 initn: 315 init1: 283 opt: 297  Z-score: 383.1  bits: 76.0 E(32554): 5.1e-15
Smith-Waterman score: 297; 46.9% identity (76.5% similar) in 98 aa overlap (14-111:10-105)

               10        20        30        40        50        60
pF1KE1 MSLLSSRAARVPGPSSSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHP
                    ::.     ..:::::   .   .::  :.:. :::: :::: ::.: 
CCDS34     MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAG--ASVVTELRCQCLQTLQGIHL
                   10        20        30          40        50    

               70        80        90       100       110    
pF1KE1 KMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
       : :....: . ::.:...::.:.:::::. ::.: .:...:.:.:::. :.   
CCDS34 KNIQSVNVRSPGPHCAQTEVIATLKNGKKACLNPASPMVQKIIEKILNKGSTN 
           60        70        80        90       100        

>>CCDS34008.1 CXCL2 gene_id:2920|Hs108|chr4               (107 aa)
 initn: 313 init1: 270 opt: 293  Z-score: 378.1  bits: 75.1 E(32554): 9.7e-15
Smith-Waterman score: 293; 44.3% identity (76.4% similar) in 106 aa overlap (6-110:2-104)

               10         20        30        40        50         
pF1KE1 MSLLSSRAARVPGPSSS-LCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVH
            .::.   .::.  :  . .:::::.  .  :...: :.   :::: :::: ::.:
CCDS34     MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLAT---ELRCQCLQTLQGIH
                   10        20        30           40        50   

      60        70        80        90       100       110    
pF1KE1 PKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
        : :....: . ::.:...::.:.::::.. ::.: .:..::.:.:.: .:    
CCDS34 LKNIQSVKVKSPGPHCAQTEVIATLKNGQKACLNPASPMVKKIIEKMLKNGKSN 
            60        70        80        90       100        

>>CCDS3563.1 PPBP gene_id:5473|Hs108|chr4                 (128 aa)
 initn: 327 init1: 284 opt: 284  Z-score: 365.8  bits: 73.1 E(32554): 4.7e-14
Smith-Waterman score: 284; 56.2% identity (90.6% similar) in 64 aa overlap (46-109:60-123)

          20        30        40        50        60        70     
pF1KE1 SSLCALLVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQGVHPKMISNLQVFAIGPQC
                                     ::::.:..::.:.::: :..:.:.. : .:
CCDS35 LTALASSTKGQTKRNLAKGKEESLDSDLYAELRCMCIKTTSGIHPKNIQSLEVIGKGTHC
      30        40        50        60        70        80         

          80        90       100       110    
pF1KE1 SKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
       ..:::.:.::.:..:::::.:: .::..:: : :     
CCDS35 NQVEVIATLKDGRKICLDPDAPRIKKIVQKKLAGDESAD
      90       100       110       120        

>>CCDS3562.1 PF4 gene_id:5196|Hs108|chr4                  (101 aa)
 initn: 240 init1: 199 opt: 260  Z-score: 337.1  bits: 67.4 E(32554): 1.9e-12
Smith-Waterman score: 260; 40.2% identity (75.3% similar) in 97 aa overlap (15-108:4-100)

               10        20           30        40        50       
pF1KE1 MSLLSSRAARVPGPSSSLCAL---LVLLLLLTQPGPIASAGPAAAVLRELRCVCLQTTQG
                     ....::    :..: ::  :  .: :.  :    .:.:.:..::. 
CCDS35            MSSAAGFCASRPGLLFLGLLLLPLVVAFASAEAEEDGDLQCLCVKTTSQ
                          10        20        30        40         

        60        70        80        90       100       110    
pF1KE1 VHPKMISNLQVFAIGPQCSKVEVVASLKNGKEICLDPEAPFLKKVIQKILDGGNKEN
       :.:. :..:.:.  ::.:  ....:.::::..:::: .::. ::.:.:.:.      
CCDS35 VRPRHITSLEVIKAGPHCPTAQLIATLKNGRKICLDLQAPLYKKIIKKLLES     
      50        60        70        80        90       100      




114 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:09:54 2016 done: Mon Nov  7 02:09:54 2016
 Total Scan time:  1.750 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]
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