FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5113, 158 aa
  1>>>pF1KE5113 158 - 158 aa - 158 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2768+/-0.000838; mu= 11.4884+/- 0.050
 mean_var=53.3199+/-10.666, 0's: 0 Z-trim(105.0): 16  B-trim: 0 in 0/50
 Lambda= 0.175642
 statistics sampled from 8173 (8175) to 8173 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.251), width:  16
 Scan time:  1.520

The best scores are:                                      opt bits E(32554)
CCDS12769.1 RPS11 gene_id:6205|Hs108|chr19         ( 158) 1044 272.3 8.7e-74


>>CCDS12769.1 RPS11 gene_id:6205|Hs108|chr19              (158 aa)
 initn: 1044 init1: 1044 opt: 1044  Z-score: 1438.2  bits: 272.3 E(32554): 8.7e-74
Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KE5 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
               70        80        90       100       110       120

              130       140       150        
pF1KE5 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
       ::::::::::::::::::::::::::::::::::::::
CCDS12 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
              130       140       150        




158 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:27:53 2016 done: Mon Nov  7 21:27:53 2016
 Total Scan time:  1.520 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]