FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6142, 109 aa 1>>>pF1KE6142 109 - 109 aa - 109 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.7357+/-0.000271; mu= 13.1378+/- 0.017 mean_var=54.9473+/-11.158, 0's: 0 Z-trim(119.8): 18 B-trim: 849 in 1/50 Lambda= 0.173022 statistics sampled from 34181 (34199) to 34181 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.783), E-opt: 0.2 (0.401), width: 16 Scan time: 4.660 The best scores are: opt bits E(85289) NP_004364 (OMIM: 602072,616039) cytochrome c oxida ( 109) 762 197.1 4.8e-51 NP_005196 (OMIM: 602009) cytochrome c oxidase subu ( 97) 388 103.7 5.5e-23 >>NP_004364 (OMIM: 602072,616039) cytochrome c oxidase s (109 aa) initn: 762 init1: 762 opt: 762 Z-score: 1037.4 bits: 197.1 E(85289): 4.8e-51 Smith-Waterman score: 762; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109) 10 20 30 40 50 60 pF1KE6 MAVVGVSSVSRLLGRSRPQLGRPMSSGAHGEEGSARMWKTLTFFVALPGVAVSMLNVYLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MAVVGVSSVSRLLGRSRPQLGRPMSSGAHGEEGSARMWKTLTFFVALPGVAVSMLNVYLK 10 20 30 40 50 60 70 80 90 100 pF1KE6 SHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE ::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 SHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE 70 80 90 100 >>NP_005196 (OMIM: 602009) cytochrome c oxidase subunit (97 aa) initn: 292 init1: 282 opt: 388 Z-score: 533.6 bits: 103.7 E(85289): 5.5e-23 Smith-Waterman score: 388; 63.4% identity (78.5% similar) in 93 aa overlap (17-107:6-95) 10 20 30 40 50 pF1KE6 MAVVGVSSVSRLLGRSRPQLGRPMSSGAHGEEGSA--RMWKTLTFFVALPGVAVSMLNVY :: : : ..:.:.: .:.: : :. ::: .:::.::. .: : NP_005 MALPLRP-LTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSY 10 20 30 40 60 70 80 90 100 pF1KE6 LKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE : : :.. :::: : ::::::::.:::::::::::: :::::::::: NP_005 L--HSGHRPRPEFRPYQHLRIRTKPYPWGDGNHTLFHNSHVNPLPTGYEHP 50 60 70 80 90 109 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:49:45 2016 done: Tue Nov 8 09:49:45 2016 Total Scan time: 4.660 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]