FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6142, 109 aa 1>>>pF1KE6142 109 - 109 aa - 109 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9272+/-0.000554; mu= 11.8293+/- 0.034 mean_var=55.3830+/-11.067, 0's: 0 Z-trim(112.5): 7 B-trim: 0 in 0/52 Lambda= 0.172340 statistics sampled from 13260 (13266) to 13260 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.792), E-opt: 0.2 (0.408), width: 16 Scan time: 1.260 The best scores are: opt bits E(32554) CCDS9197.1 COX6A1 gene_id:1337|Hs108|chr12 ( 109) 762 196.4 2.8e-51 CCDS10712.1 COX6A2 gene_id:1339|Hs108|chr16 ( 97) 388 103.4 2.5e-23 >>CCDS9197.1 COX6A1 gene_id:1337|Hs108|chr12 (109 aa) initn: 762 init1: 762 opt: 762 Z-score: 1034.0 bits: 196.4 E(32554): 2.8e-51 Smith-Waterman score: 762; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109) 10 20 30 40 50 60 pF1KE6 MAVVGVSSVSRLLGRSRPQLGRPMSSGAHGEEGSARMWKTLTFFVALPGVAVSMLNVYLK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 MAVVGVSSVSRLLGRSRPQLGRPMSSGAHGEEGSARMWKTLTFFVALPGVAVSMLNVYLK 10 20 30 40 50 60 70 80 90 100 pF1KE6 SHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS91 SHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE 70 80 90 100 >>CCDS10712.1 COX6A2 gene_id:1339|Hs108|chr16 (97 aa) initn: 292 init1: 282 opt: 388 Z-score: 532.2 bits: 103.4 E(32554): 2.5e-23 Smith-Waterman score: 388; 63.4% identity (78.5% similar) in 93 aa overlap (17-107:6-95) 10 20 30 40 50 pF1KE6 MAVVGVSSVSRLLGRSRPQLGRPMSSGAHGEEGSA--RMWKTLTFFVALPGVAVSMLNVY :: : : ..:.:.: .:.: : :. ::: .:::.::. .: : CCDS10 MALPLRP-LTRGLASAAKGGHGGAGARTWRLLTFVLALPSVALCTFNSY 10 20 30 40 60 70 80 90 100 pF1KE6 LKSHHGEHERPEFIAYPHLRIRTKPFPWGDGNHTLFHNPHVNPLPTGYEDE : : :.. :::: : ::::::::.:::::::::::: :::::::::: CCDS10 L--HSGHRPRPEFRPYQHLRIRTKPYPWGDGNHTLFHNSHVNPLPTGYEHP 50 60 70 80 90 109 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:49:44 2016 done: Tue Nov 8 09:49:44 2016 Total Scan time: 1.260 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]