FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6117, 133 aa 1>>>pF1KE6117 133 - 133 aa - 133 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1647+/-0.000582; mu= 12.2432+/- 0.035 mean_var=59.5338+/-11.896, 0's: 0 Z-trim(112.0): 16 B-trim: 696 in 1/49 Lambda= 0.166224 statistics sampled from 12783 (12797) to 12783 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.768), E-opt: 0.2 (0.393), width: 16 Scan time: 0.950 The best scores are: opt bits E(32554) CCDS41585.1 IFITM3 gene_id:10410|Hs108|chr11 ( 133) 894 221.7 1.1e-58 CCDS41583.1 IFITM2 gene_id:10581|Hs108|chr11 ( 132) 802 199.6 4.6e-52 CCDS41584.1 IFITM1 gene_id:8519|Hs108|chr11 ( 125) 563 142.3 7.9e-35 CCDS31323.1 IFITM5 gene_id:387733|Hs108|chr11 ( 132) 265 70.8 2.7e-13 CCDS53593.2 IFITM10 gene_id:402778|Hs108|chr11 ( 228) 236 64.0 5.3e-11 >>CCDS41585.1 IFITM3 gene_id:10410|Hs108|chr11 (133 aa) initn: 894 init1: 894 opt: 894 Z-score: 1167.3 bits: 221.7 E(32554): 1.1e-58 Smith-Waterman score: 894; 100.0% identity (100.0% similar) in 133 aa overlap (1-133:1-133) 10 20 30 40 50 60 pF1KE6 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL 70 80 90 100 110 120 130 pF1KE6 LIVIPVLIFQAYG ::::::::::::: CCDS41 LIVIPVLIFQAYG 130 >>CCDS41583.1 IFITM2 gene_id:10581|Hs108|chr11 (132 aa) initn: 774 init1: 774 opt: 802 Z-score: 1048.2 bits: 199.6 E(32554): 4.6e-52 Smith-Waterman score: 802; 91.6% identity (96.2% similar) in 131 aa overlap (1-131:1-130) 10 20 30 40 50 60 pF1KE6 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW ::: :::: :::::::::::::::::.:::.::.::::::: :::::::::::::::::: CCDS41 MNHIVQTF-SPVNSGQPPNYEMLKEEQEVAMLGVPHNPAPPMSTVIHIRSETSVPDHVVW 10 20 30 40 50 70 80 90 100 110 120 pF1KE6 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL ::::::::: :::::::::::::::::::::::::::::::::::::::::::::.:::: CCDS41 SLFNTLFMNTCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGIFMTIL 60 70 80 90 100 110 130 pF1KE6 LIVIPVLIFQAYG ::.::::. :: CCDS41 LIIIPVLVVQAQR 120 130 >>CCDS41584.1 IFITM1 gene_id:8519|Hs108|chr11 (125 aa) initn: 590 init1: 558 opt: 563 Z-score: 738.8 bits: 142.3 E(32554): 7.9e-35 Smith-Waterman score: 563; 82.4% identity (89.8% similar) in 108 aa overlap (22-129:1-106) 10 20 30 40 50 60 pF1KE6 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW : :::::::::: : . : ::::.:.::::::::::: CCDS41 MHKEEHEVAVLGPPPSTILPRSTVINIHSETSVPDHVVW 10 20 30 70 80 90 100 110 120 pF1KE6 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIL :::::::.: ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS41 SLFNTLFLNWCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNIWALILGILMTIG 40 50 60 70 80 90 130 pF1KE6 LIVIPVLIFQAYG .:.. :.: CCDS41 FILL--LVFGSVTVYHIMLQIIQEKRGY 100 110 120 >>CCDS31323.1 IFITM5 gene_id:387733|Hs108|chr11 (132 aa) initn: 307 init1: 260 opt: 265 Z-score: 352.2 bits: 70.8 E(32554): 2.7e-13 Smith-Waterman score: 277; 44.0% identity (69.0% similar) in 100 aa overlap (27-122:21-105) 10 20 30 40 50 60 pF1KE6 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTSTVIHIRSETSVPDHVVW : . .::::: : :: ::..: CCDS31 MDTAYPREDTRAPTPSKAGAHTALTLGAPH-P-PPR-------------DHLIW 10 20 30 70 80 90 100 110 pF1KE6 SLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYASTAKCLNI----WALILGIL :.:.::..: :::::.:.:::.:.::.:.:::. .:. ..: ::: :: :.:. .: CCDS31 SVFSTLYLNLCCLGFLALAYSIKARDQKVVGDLEAARRFGSKAKCYNILAAMWTLVPPLL 40 50 60 70 80 90 120 130 pF1KE6 MTILLIVIPVLIFQAYG . :.. CCDS31 LLGLVVTGALHLARLAKDSAAFFSTKFDDADYD 100 110 120 130 >>CCDS53593.2 IFITM10 gene_id:402778|Hs108|chr11 (228 aa) initn: 280 init1: 231 opt: 236 Z-score: 310.9 bits: 64.0 E(32554): 5.3e-11 Smith-Waterman score: 247; 38.7% identity (68.5% similar) in 111 aa overlap (14-123:119-219) 10 20 30 40 pF1KE6 MNHTVQTFFSPVNSGQPPNYEMLKEEHEVAVLGAPHNPAPPTS .: :: . : :.. .. :: . CCDS53 PAPEPSASPPMAPTLFPMESKSSKTDSVRAAGAPPACKHLAEKKTMT------NP----T 90 100 110 120 130 50 60 70 80 90 100 pF1KE6 TVIHIRSETS-VPDHVVWSLFNTLFMNPCCLGFIAFAYSVKSRDRKMVGDVTGAQAYAST :::.. .:. : :. .::.:: ...: :::::::.:::.: ::.:...:..:: :.: CCDS53 TVIEVYPDTTEVNDYYLWSIFNFVYLNFCCLGFIALAYSLKVRDKKLLNDLNGAVEDAKT 140 150 160 170 180 190 110 120 130 pF1KE6 AKCLNIWALILGILMTILLIVIPVLIFQAYG :. .:: . :. ::... CCDS53 ARLFNITSSALAASCIILVFIFLRYPLTDY 200 210 220 133 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 09:35:45 2016 done: Tue Nov 8 09:35:45 2016 Total Scan time: 0.950 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]