Result of FASTA (omim) for pFN21AE1483
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1483, 451 aa
  1>>>pF1KE1483 451 - 451 aa - 451 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8462+/-0.000391; mu= 19.8219+/- 0.024
 mean_var=60.3718+/-12.066, 0's: 0 Z-trim(111.4): 67  B-trim: 926 in 1/49
 Lambda= 0.165066
 statistics sampled from 19961 (20028) to 19961 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.619), E-opt: 0.2 (0.235), width:  16
 Scan time:  8.680

The best scores are:                                      opt bits E(85289)
NP_001257328 (OMIM: 602529,611603) tubulin alpha-1 ( 451) 3047 734.4 1.5e-211
NP_006000 (OMIM: 602529,611603) tubulin alpha-1A c ( 451) 3047 734.4 1.5e-211
NP_006073 (OMIM: 602530) tubulin alpha-1B chain [H ( 451) 3036 731.8  9e-211
NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain  ( 450) 2986 719.9 3.4e-207
NP_005991 (OMIM: 191110,616208) tubulin alpha-4A c ( 448) 2933 707.2 2.2e-203
NP_001265481 (OMIM: 191110,616208) tubulin alpha-4 ( 433) 2831 682.9 4.3e-196
NP_001257329 (OMIM: 602529,611603) tubulin alpha-1 ( 416) 2785 672.0 8.3e-193
NP_061816 (OMIM: 605742,613180) tubulin alpha-8 ch ( 449) 2772 668.9 7.5e-192
NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 ( 383) 2412 583.1 4.3e-166
XP_016860313 (OMIM: 191110,616208) PREDICTED: tubu ( 295) 1925 467.1 2.8e-131
NP_006078 (OMIM: 602662) tubulin beta-4A chain iso ( 444) 1282 314.1 4.9e-85
NP_001276058 (OMIM: 602662) tubulin beta-4A chain  ( 444) 1282 314.1 4.9e-85
NP_001276056 (OMIM: 602662) tubulin beta-4A chain  ( 489) 1282 314.1 5.3e-85
NP_001276052 (OMIM: 602662) tubulin beta-4A chain  ( 495) 1282 314.1 5.3e-85
NP_821133 (OMIM: 156610,191130,615771) tubulin bet ( 444) 1280 313.6 6.8e-85
NP_006079 (OMIM: 602660) tubulin beta-4B chain [Ho ( 445) 1280 313.6 6.8e-85
NP_001060 (OMIM: 615101,615763) tubulin beta-2A ch ( 445) 1269 311.0 4.2e-84
NP_821080 (OMIM: 610031,612850) tubulin beta-2B ch ( 445) 1267 310.5 5.8e-84
NP_001290453 (OMIM: 615103) tubulin beta-6 chain i ( 446) 1266 310.3 6.8e-84
NP_115914 (OMIM: 615103) tubulin beta-6 chain isof ( 446) 1266 310.3 6.8e-84
NP_006077 (OMIM: 600638,602661,614039) tubulin bet ( 450) 1265 310.0 8.1e-84
NP_817124 (OMIM: 616768,616780) tubulin beta-8 cha ( 444) 1237 303.4 8.2e-82
NP_001280141 (OMIM: 156610,191130,615771) tubulin  ( 464) 1218 298.8 1.9e-80
NP_110400 (OMIM: 612901,613112) tubulin beta-1 cha ( 451) 1190 292.2 1.9e-78
NP_001280143 (OMIM: 156610,191130,615771) tubulin  ( 400) 1149 282.4 1.5e-75
XP_016883574 (OMIM: 612901,613112) PREDICTED: tubu ( 429) 1107 272.4 1.7e-72
NP_001276059 (OMIM: 602662) tubulin beta-4A chain  ( 372) 1079 265.7 1.5e-70
NP_001276060 (OMIM: 602662) tubulin beta-4A chain  ( 372) 1079 265.7 1.5e-70
NP_001280145 (OMIM: 156610,191130,615771) tubulin  ( 372) 1069 263.3 7.8e-70
NP_001280144 (OMIM: 156610,191130,615771) tubulin  ( 372) 1069 263.3 7.8e-70
NP_001184110 (OMIM: 600638,602661,614039) tubulin  ( 378) 1066 262.6 1.3e-69
NP_001290456 (OMIM: 615103) tubulin beta-6 chain i ( 374) 1065 262.3 1.5e-69
XP_011517761 (OMIM: 616768,616780) PREDICTED: tubu ( 372) 1051 259.0 1.5e-68
NP_001290457 (OMIM: 615103) tubulin beta-6 chain i ( 381) 1003 247.6 4.3e-65
NP_001297244 (OMIM: 615101,615763) tubulin beta-2A ( 360) 1002 247.3 4.9e-65
NP_001290455 (OMIM: 615103) tubulin beta-6 chain i ( 409)  990 244.5 3.9e-64
XP_016871682 (OMIM: 616768,616780) PREDICTED: tubu ( 332)  911 225.6 1.5e-58
XP_016871681 (OMIM: 616768,616780) PREDICTED: tubu ( 332)  911 225.6 1.5e-58
NP_001061 (OMIM: 191135,615412) tubulin gamma-1 ch ( 451)  817 203.3 1.1e-51
NP_057521 (OMIM: 605785) tubulin gamma-2 chain iso ( 451)  810 201.7 3.4e-51
NP_001290459 (OMIM: 615103) tubulin beta-6 chain i ( 300)  780 194.4 3.4e-49
NP_001290458 (OMIM: 615103) tubulin beta-6 chain i ( 300)  780 194.4 3.4e-49
XP_011517762 (OMIM: 616768,616780) PREDICTED: tubu ( 291)  731 182.7 1.1e-45
NP_001307438 (OMIM: 605785) tubulin gamma-2 chain  ( 460)  542 137.9 5.6e-32
NP_057346 (OMIM: 607345) tubulin epsilon chain [Ho ( 475)  443 114.3 7.2e-25
XP_011522916 (OMIM: 605785) PREDICTED: tubulin gam ( 298)  435 112.3 1.9e-24
XP_016879942 (OMIM: 605785) PREDICTED: tubulin gam ( 298)  435 112.3 1.9e-24
XP_016879944 (OMIM: 605785) PREDICTED: tubulin gam ( 274)  409 106.0 1.3e-22
XP_016879946 (OMIM: 605785) PREDICTED: tubulin gam ( 274)  409 106.0 1.3e-22
XP_016879943 (OMIM: 605785) PREDICTED: tubulin gam ( 274)  409 106.0 1.3e-22


>>NP_001257328 (OMIM: 602529,611603) tubulin alpha-1A ch  (451 aa)
 initn: 3047 init1: 3047 opt: 3047  Z-score: 3919.2  bits: 734.4 E(85289): 1.5e-211
Smith-Waterman score: 3047; 100.0% identity (100.0% similar) in 451 aa overlap (1-451:1-451)

               10        20        30        40        50        60
pF1KE1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440       450 
pF1KE1 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
       :::::::::::::::::::::::::::::::
NP_001 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
              430       440       450 

>>NP_006000 (OMIM: 602529,611603) tubulin alpha-1A chain  (451 aa)
 initn: 3047 init1: 3047 opt: 3047  Z-score: 3919.2  bits: 734.4 E(85289): 1.5e-211
Smith-Waterman score: 3047; 100.0% identity (100.0% similar) in 451 aa overlap (1-451:1-451)

               10        20        30        40        50        60
pF1KE1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440       450 
pF1KE1 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
       :::::::::::::::::::::::::::::::
NP_006 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
              430       440       450 

>>NP_006073 (OMIM: 602530) tubulin alpha-1B chain [Homo   (451 aa)
 initn: 3036 init1: 3036 opt: 3036  Z-score: 3905.0  bits: 731.8 E(85289): 9e-211
Smith-Waterman score: 3036; 99.6% identity (100.0% similar) in 451 aa overlap (1-451:1-451)

               10        20        30        40        50        60
pF1KE1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_006 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
       :::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_006 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440       450 
pF1KE1 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
       :::::::::::::::::::::::::::::::
NP_006 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
              430       440       450 

>>NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain [Hom  (450 aa)
 initn: 2970 init1: 2970 opt: 2986  Z-score: 3840.7  bits: 719.9 E(85289): 3.4e-207
Smith-Waterman score: 2986; 97.6% identity (99.6% similar) in 451 aa overlap (1-451:1-450)

               10        20        30        40        50        60
pF1KE1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
       ::::::::::::::.:::::::::::::::::::::::::::::::::::::::.:::::
NP_005 HVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
       ::::::: ::::::::.::::::::::::.:::::::::::::::::::.::::::::::
NP_005 RIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
       ::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_005 QMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440       450 
pF1KE1 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
       ::::.::::::::::::::::.:.:: ::::
NP_005 AREDLAALEKDYEEVGVDSVEAEAEE-GEEY
              430       440        450

>>NP_005991 (OMIM: 191110,616208) tubulin alpha-4A chain  (448 aa)
 initn: 2927 init1: 2927 opt: 2933  Z-score: 3772.5  bits: 707.2 E(85289): 2.2e-203
Smith-Waterman score: 2933; 96.0% identity (98.4% similar) in 450 aa overlap (1-450:1-448)

               10        20        30        40        50        60
pF1KE1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
       ::::::.::::::::.:::::::::::::::::::::::::::::::::.::: ::::::
NP_005 MRECISVHVGQAGVQMGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
       :::::::::::::::::.:.: :::::::::::::::::::::::::::::::::: :::
NP_005 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
       :::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_005 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
       :::::::::::::::::::::::::::::::::.:::::.::::::::::::::::::::
NP_005 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440       450 
pF1KE1 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
       ::::::::::::::::.:: :   :.:::: 
NP_005 AREDMAALEKDYEEVGIDSYED--EDEGEE 
              430       440           

>>NP_001265481 (OMIM: 191110,616208) tubulin alpha-4A ch  (433 aa)
 initn: 2823 init1: 2823 opt: 2831  Z-score: 3641.5  bits: 682.9 E(85289): 4.3e-196
Smith-Waterman score: 2831; 96.1% identity (98.4% similar) in 435 aa overlap (16-450:1-433)

               10        20        30        40        50        60
pF1KE1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
                      .:::::::::::::::::::::::::::::::::.::: ::::::
NP_001                MGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFTTFFCETGAGK
                              10        20        30        40     

               70        80        90       100       110       120
pF1KE1 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
       :::::::::::::::::.:.: :::::::::::::::::::::::::::::::::: :::
NP_001 HVPRAVFVDLEPTVIDEIRNGPYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDPVLD
          50        60        70        80        90       100     

              130       140       150       160       170       180
pF1KE1 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
       :::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RIRKLSDQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
         110       120       130       140       150       160     

              190       200       210       220       230       240
pF1KE1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_001 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
         170       180       190       200       210       220     

              250       260       270       280       290       300
pF1KE1 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
         230       240       250       260       270       280     

              310       320       330       340       350       360
pF1KE1 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
       :::::::::::::::::::::::::::::::::.:::::.::::::::::::::::::::
NP_001 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPP
         290       300       310       320       330       340     

              370       380       390       400       410       420
pF1KE1 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
         350       360       370       380       390       400     

              430       440       450 
pF1KE1 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
       ::::::::::::::::.:: : :  .:::: 
NP_001 AREDMAALEKDYEEVGIDSYEDE--DEGEE 
         410       420         430    

>>NP_001257329 (OMIM: 602529,611603) tubulin alpha-1A ch  (416 aa)
 initn: 2785 init1: 2785 opt: 2785  Z-score: 3582.5  bits: 672.0 E(85289): 8.3e-193
Smith-Waterman score: 2785; 100.0% identity (100.0% similar) in 416 aa overlap (36-451:1-416)

          10        20        30        40        50        60     
pF1KE1 SIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRA
                                     ::::::::::::::::::::::::::::::
NP_001                               MPSDKTIGGGDDSFNTFFSETGAGKHVPRA
                                             10        20        30

          70        80        90       100       110       120     
pF1KE1 VFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKL
               40        50        60        70        80        90

         130       140       150       160       170       180     
pF1KE1 ADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPY
              100       110       120       130       140       150

         190       200       210       220       230       240     
pF1KE1 NSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFD
              160       170       180       190       200       210

         250       260       270       280       290       300     
pF1KE1 GALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKC
              220       230       240       250       260       270

         310       320       330       340       350       360     
pF1KE1 DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPG
              280       290       300       310       320       330

         370       380       390       400       410       420     
pF1KE1 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDM
              340       350       360       370       380       390

         430       440       450 
pF1KE1 AALEKDYEEVGVDSVEGEGEEEGEEY
       ::::::::::::::::::::::::::
NP_001 AALEKDYEEVGVDSVEGEGEEEGEEY
              400       410      

>>NP_061816 (OMIM: 605742,613180) tubulin alpha-8 chain   (449 aa)
 initn: 2765 init1: 2765 opt: 2772  Z-score: 3565.3  bits: 668.9 E(85289): 7.5e-192
Smith-Waterman score: 2772; 89.8% identity (96.7% similar) in 451 aa overlap (1-451:1-449)

               10        20        30        40        50        60
pF1KE1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGK
       ::::::.::::::::::::::::.::::::: :: . .. .  . ::::.::::::: ::
NP_061 MRECISVHVGQAGVQIGNACWELFCLEHGIQADGTFDAQASKINDDDSFTTFFSETGNGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 HVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLD
       ::::::..::::::.::::.:::::::::::::::::::::::::::::.::: ::::::
NP_061 HVPRAVMIDLEPTVVDEVRAGTYRQLFHPEQLITGKEDAANNYARGHYTVGKESIDLVLD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 RIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTA
       :::::.: :.::::::.:::::::::::::::::::::.::::::::::.::::::::::
NP_061 RIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERLSLDYGKKSKLEFAIYPAPQVSTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA
       :::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_061 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 SLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPAN
       :::::::::::::::::::::::::::::.::::.:::::::::::::::::..:::: .
NP_061 SLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIISAEKAYHEQLSVAEITSSCFEPNS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 QMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPP
       ::::::::::::::::.::::::::::::.:::.::::::::::::::::::::::::::
NP_061 QMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKTKRTIQFVDWCPTGFKVGINYQPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_061 TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSE
              370       380       390       400       410       420

              430       440       450 
pF1KE1 AREDMAALEKDYEEVGVDSVEGEGEEEGEEY
       ::::.:::::::::::.:: : :.:  :::.
NP_061 AREDLAALEKDYEEVGTDSFEEENE--GEEF
              430       440           

>>NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 cha  (383 aa)
 initn: 2401 init1: 2401 opt: 2412  Z-score: 3103.0  bits: 583.1 E(85289): 4.3e-166
Smith-Waterman score: 2412; 92.4% identity (98.2% similar) in 384 aa overlap (68-451:2-383)

        40        50        60        70        80        90       
pF1KE1 SDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKE
                                     .::::::.::::.:::::::::::::::::
NP_001                              MIDLEPTVVDEVRAGTYRQLFHPEQLITGKE
                                            10        20        30 

       100       110       120       130       140       150       
pF1KE1 DAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERL
       ::::::::::::.::: :::::::::::.: :.::::::.::::::::::::::::::::
NP_001 DAANNYARGHYTVGKESIDLVLDRIRKLTDACSGLQGFLIFHSFGGGTGSGFTSLLMERL
              40        50        60        70        80        90 

       160       170       180       190       200       210       
pF1KE1 SVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL
       :.::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SLDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNL
             100       110       120       130       140       150 

       220       230       240       250       260       270       
pF1KE1 DIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVIS
       ::::::::::::::.:::::::::::::::::::::::::::::::::::::.::::.::
NP_001 DIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPIIS
             160       170       180       190       200       210 

       280       290       300       310       320       330       
pF1KE1 AEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKT
       :::::::::::::::..:::: .::::::::::::::::.::::::::::::.:::.:::
NP_001 AEKAYHEQLSVAEITSSCFEPNSQMVKCDPRHGKYMACCMLYRGDVVPKDVNVAIAAIKT
             220       230       240       250       260       270 

       340       350       360       370       380       390       
pF1KE1 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDL
             280       290       300       310       320       330 

       400       410       420       430       440       450 
pF1KE1 MYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEEY
       :::::::::::::::::::::::::::.:::::::::::.:: : :.:  :::.
NP_001 MYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGTDSFEEENE--GEEF
             340       350       360       370         380   

>>XP_016860313 (OMIM: 191110,616208) PREDICTED: tubulin   (295 aa)
 initn: 1919 init1: 1919 opt: 1925  Z-score: 2477.8  bits: 467.1 E(85289): 2.8e-131
Smith-Waterman score: 1925; 97.0% identity (98.7% similar) in 297 aa overlap (154-450:1-295)

           130       140       150       160       170       180   
pF1KE1 KLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVE
                                     ::::::::::::::::::::::::::::::
XP_016                               MERLSVDYGKKSKLEFSIYPAPQVSTAVVE
                                             10        20        30

           190       200       210       220       230       240   
pF1KE1 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLR
       ::::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::
XP_016 PYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR
               40        50        60        70        80        90

           250       260       270       280       290       300   
pF1KE1 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMV
              100       110       120       130       140       150

           310       320       330       340       350       360   
pF1KE1 KCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVV
       ::::::::::::::::::::::::::::::.:::::.:::::::::::::::::::::::
XP_016 KCDPRHGKYMACCLLYRGDVVPKDVNAAIAAIKTKRSIQFVDWCPTGFKVGINYQPPTVV
              160       170       180       190       200       210

           370       380       390       400       410       420   
pF1KE1 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARE
              220       230       240       250       260       270

           430       440       450 
pF1KE1 DMAALEKDYEEVGVDSVEGEGEEEGEEY
       :::::::::::::.:: : :  .:::: 
XP_016 DMAALEKDYEEVGIDSYEDE--DEGEE 
              280       290        




451 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:15:38 2016 done: Mon Nov  7 02:15:39 2016
 Total Scan time:  8.680 Total Display time:  0.070

Function used was FASTA [36.3.4 Apr, 2011]
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