FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5109, 159 aa 1>>>pF1KE5109 159 - 159 aa - 159 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1080+/-0.000656; mu= 12.9385+/- 0.039 mean_var=59.2724+/-12.250, 0's: 0 Z-trim(109.8): 5 B-trim: 7 in 1/51 Lambda= 0.166590 statistics sampled from 11109 (11113) to 11109 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.341), width: 16 Scan time: 1.880 The best scores are: opt bits E(32554) CCDS31678.1 SDHD gene_id:6392|Hs108|chr11 ( 159) 1085 268.4 1.3e-72 CCDS60958.1 SDHD gene_id:6392|Hs108|chr11 ( 143) 725 181.9 1.3e-46 CCDS60960.1 SDHD gene_id:6392|Hs108|chr11 ( 120) 680 171.0 2e-43 CCDS60959.1 SDHD gene_id:6392|Hs108|chr11 ( 85) 401 103.9 2.3e-23 >>CCDS31678.1 SDHD gene_id:6392|Hs108|chr11 (159 aa) initn: 1085 init1: 1085 opt: 1085 Z-score: 1417.2 bits: 268.4 E(32554): 1.3e-72 Smith-Waterman score: 1085; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159) 10 20 30 40 50 60 pF1KE5 MAVLWRLSAVCGALGGRALLLRTPVVRPAHISAFLQDRPIPEWCGVQHIHLSPSHHSGSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 MAVLWRLSAVCGALGGRALLLRTPVVRPAHISAFLQDRPIPEWCGVQHIHLSPSHHSGSK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 AASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDYVHGDAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS31 AASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDYVHGDAL 70 80 90 100 110 120 130 140 150 pF1KE5 QKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL ::::::::::::::::::::::::::::::::::::::: CCDS31 QKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL 130 140 150 >>CCDS60958.1 SDHD gene_id:6392|Hs108|chr11 (143 aa) initn: 725 init1: 725 opt: 725 Z-score: 950.3 bits: 181.9 E(32554): 1.3e-46 Smith-Waterman score: 725; 100.0% identity (100.0% similar) in 105 aa overlap (1-105:1-105) 10 20 30 40 50 60 pF1KE5 MAVLWRLSAVCGALGGRALLLRTPVVRPAHISAFLQDRPIPEWCGVQHIHLSPSHHSGSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 MAVLWRLSAVCGALGGRALLLRTPVVRPAHISAFLQDRPIPEWCGVQHIHLSPSHHSGSK 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 AASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDYVHGDAL ::::::::::::::::::::::::::::::::::::::::::::: CCDS60 AASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWLECNGAILARHDLGS 70 80 90 100 110 120 130 140 150 pF1KE5 QKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL CCDS60 ARSQLTATSAFRVQAILLPQPPK 130 140 >>CCDS60960.1 SDHD gene_id:6392|Hs108|chr11 (120 aa) initn: 680 init1: 680 opt: 680 Z-score: 893.1 bits: 171.0 E(32554): 2e-43 Smith-Waterman score: 714; 75.5% identity (75.5% similar) in 159 aa overlap (1-159:1-120) 10 20 30 40 50 60 pF1KE5 MAVLWRLSAVCGALGGRALLLRTPVVRPAHISAFLQDRPIPEWCGVQHIHLSPSHHSGSK :::::::::::::::::: ::: CCDS60 MAVLWRLSAVCGALGGRA---------------------------------------GSK 10 20 70 80 90 100 110 120 pF1KE5 AASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDYVHGDAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 AASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDYVHGDAL 30 40 50 60 70 80 130 140 150 pF1KE5 QKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL ::::::::::::::::::::::::::::::::::::::: CCDS60 QKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL 90 100 110 120 >>CCDS60959.1 SDHD gene_id:6392|Hs108|chr11 (85 aa) initn: 441 init1: 401 opt: 401 Z-score: 533.0 bits: 103.9 E(32554): 2.3e-23 Smith-Waterman score: 407; 73.4% identity (86.1% similar) in 79 aa overlap (1-79:1-70) 10 20 30 40 50 60 pF1KE5 MAVLWRLSAVCGALGGRALLLRTPVVRPAHISAFLQDRPIPEWCGVQHIHLSPSHHSGSK :::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 MAVLWRLSAVCGALGGRALLLRTPVVRPAHISAFLQDRPIPEWCGVQHIHLSPSHH---- 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 AASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDYVHGDAL :. .... ....:. CCDS60 -----WALDKLLLTMFMGMPCRKLPRQGFWHFQL 60 70 80 159 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:24:38 2016 done: Mon Nov 7 21:24:39 2016 Total Scan time: 1.880 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]