FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1557, 328 aa 1>>>pF1KE1557 328 - 328 aa - 328 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.2971+/-0.000445; mu= 11.0872+/- 0.027 mean_var=144.1053+/-32.251, 0's: 0 Z-trim(112.9): 130 B-trim: 98 in 1/50 Lambda= 0.106840 statistics sampled from 21821 (21998) to 21821 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.627), E-opt: 0.2 (0.258), width: 16 Scan time: 6.390 The best scores are: opt bits E(85289) NP_004716 (OMIM: 603719) mitotic checkpoint protei ( 328) 2260 360.5 2.7e-99 NP_001007794 (OMIM: 603719) mitotic checkpoint pro ( 326) 2232 356.2 5.4e-98 XP_011527390 (OMIM: 603343) PREDICTED: mRNA export ( 368) 664 114.6 3.3e-25 NP_003601 (OMIM: 603343) mRNA export factor [Homo ( 368) 664 114.6 3.3e-25 XP_011527391 (OMIM: 603343) PREDICTED: mRNA export ( 368) 664 114.6 3.3e-25 XP_005260639 (OMIM: 603343) PREDICTED: mRNA export ( 368) 664 114.6 3.3e-25 NP_001015885 (OMIM: 603343) mRNA export factor [Ho ( 368) 664 114.6 3.3e-25 XP_005260640 (OMIM: 603343) PREDICTED: mRNA export ( 406) 664 114.6 3.6e-25 XP_016883597 (OMIM: 603343) PREDICTED: mRNA export ( 357) 659 113.8 5.6e-25 XP_011527389 (OMIM: 603343) PREDICTED: mRNA export ( 357) 659 113.8 5.6e-25 NP_004805 (OMIM: 607797) U5 small nuclear ribonucl ( 357) 253 51.2 3.8e-06 NP_001271359 (OMIM: 616194) U3 small nucleolar RNA ( 499) 218 46.0 0.0002 NP_115551 (OMIM: 616194) U3 small nucleolar RNA-as ( 518) 218 46.0 0.00021 XP_011541982 (OMIM: 616194) PREDICTED: U3 small nu ( 518) 218 46.0 0.00021 XP_011530390 (OMIM: 606278) PREDICTED: F-box/WD re ( 540) 203 43.7 0.0011 NP_001013433 (OMIM: 606278) F-box/WD repeat-contai ( 589) 203 43.7 0.0011 NP_060785 (OMIM: 606278) F-box/WD repeat-containin ( 627) 203 43.8 0.0012 XP_011530388 (OMIM: 606278) PREDICTED: F-box/WD re ( 679) 203 43.8 0.0012 XP_011530389 (OMIM: 606278) PREDICTED: F-box/WD re ( 679) 203 43.8 0.0012 XP_011530387 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 203 43.8 0.0013 XP_016863851 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 203 43.8 0.0013 XP_011530386 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 203 43.8 0.0013 NP_361014 (OMIM: 606278) F-box/WD repeat-containin ( 707) 203 43.8 0.0013 XP_011530385 (OMIM: 606278) PREDICTED: F-box/WD re ( 707) 203 43.8 0.0013 NP_001186706 (OMIM: 614784,615973) POC1 centriolar ( 436) 192 41.9 0.003 NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478) 192 41.9 0.0032 XP_016863185 (OMIM: 609005) PREDICTED: WD repeat-c (1228) 194 42.7 0.0048 XP_016863184 (OMIM: 609005) PREDICTED: WD repeat-c (1235) 194 42.7 0.0048 XP_016863183 (OMIM: 609005) PREDICTED: WD repeat-c (1252) 194 42.7 0.0049 XP_016863182 (OMIM: 609005) PREDICTED: WD repeat-c (1252) 194 42.7 0.0049 XP_016863181 (OMIM: 609005) PREDICTED: WD repeat-c (1259) 194 42.7 0.0049 XP_016863180 (OMIM: 609005) PREDICTED: WD repeat-c (1259) 194 42.7 0.0049 XP_016863186 (OMIM: 609005) PREDICTED: WD repeat-c ( 982) 190 42.0 0.0064 XP_005262782 (OMIM: 609005) PREDICTED: WD repeat-c (1216) 190 42.1 0.0073 NP_851782 (OMIM: 609005) WD repeat-containing prot (1283) 190 42.1 0.0076 XP_011529884 (OMIM: 609005) PREDICTED: WD repeat-c (1290) 190 42.1 0.0076 NP_079498 (OMIM: 611059) WD repeat-containing prot ( 313) 181 40.0 0.0077 XP_016863179 (OMIM: 609005) PREDICTED: WD repeat-c (1307) 190 42.1 0.0077 XP_016863178 (OMIM: 609005) PREDICTED: WD repeat-c (1307) 190 42.1 0.0077 XP_016863175 (OMIM: 609005) PREDICTED: WD repeat-c (1314) 190 42.1 0.0077 XP_016863177 (OMIM: 609005) PREDICTED: WD repeat-c (1314) 190 42.1 0.0077 XP_016863176 (OMIM: 609005) PREDICTED: WD repeat-c (1314) 190 42.1 0.0077 NP_733828 (OMIM: 609005) WD repeat-containing prot (1322) 190 42.1 0.0078 NP_004757 (OMIM: 606990) coatomer subunit beta' [H ( 906) 187 41.5 0.0083 NP_001093207 (OMIM: 616850) WD repeat domain-conta ( 315) 179 39.7 0.0096 NP_115708 (OMIM: 616850) WD repeat domain-containi ( 315) 179 39.7 0.0096 >>NP_004716 (OMIM: 603719) mitotic checkpoint protein BU (328 aa) initn: 2260 init1: 2260 opt: 2260 Z-score: 1903.6 bits: 360.5 E(85289): 2.7e-99 Smith-Waterman score: 2260; 100.0% identity (100.0% similar) in 328 aa overlap (1-328:1-328) 10 20 30 40 50 60 pF1KE1 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE 250 260 270 280 290 300 310 320 pF1KE1 MDDTEHPEDGIFIRQVTDAETKPKSPCT :::::::::::::::::::::::::::: NP_004 MDDTEHPEDGIFIRQVTDAETKPKSPCT 310 320 >>NP_001007794 (OMIM: 603719) mitotic checkpoint protein (326 aa) initn: 2232 init1: 2232 opt: 2232 Z-score: 1880.3 bits: 356.2 E(85289): 5.4e-98 Smith-Waterman score: 2232; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325) 10 20 30 40 50 60 pF1KE1 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MTGSNEFKLNQPPEDGISSVKFSPNTSQFLLVSSWDTSVRLYDVPANSMRLKYQHTGAVL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 DCAFYDPTHAWSGGLDHQLKMHDLNTDQENLVGTHDAPIRCVEYCPEVNVMVTGSWDQTV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KLWDPRTPCNAGTFSQPEKVYTLSVSGDRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKY 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QTRCIRAFPNKQGYVLSSIEGRVAVEYLDPSPEVQKKKYAFKCHRLKENNIEQIYPVNAI 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 SFHNIHNTFATGGSDGFVNIWDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYE 250 260 270 280 290 300 310 320 pF1KE1 MDDTEHPEDGIFIRQVTDAETKPKSPCT ::::::::::::::::::::::::: NP_001 MDDTEHPEDGIFIRQVTDAETKPKST 310 320 >>XP_011527390 (OMIM: 603343) PREDICTED: mRNA export fac (368 aa) initn: 594 init1: 211 opt: 664 Z-score: 573.5 bits: 114.6 E(85289): 3.3e-25 Smith-Waterman score: 675; 35.2% identity (68.6% similar) in 338 aa overlap (6-325:31-366) 10 20 30 pF1KE1 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS ...... :.:.:. ..::: : ..::... XP_011 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG 10 20 30 40 50 60 40 50 60 70 80 pF1KE1 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE :: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...: XP_011 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE1 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG .. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .: XP_011 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE1 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV .:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.:::::: XP_011 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE1 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI :..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: .. XP_011 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 250 260 270 280 290 270 280 290 300 310 pF1KE1 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT :: . .: .. :.. :...:. .: :::: . . . .:. . ::.:... XP_011 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA 300 310 320 330 340 350 320 pF1KE1 DAETKPKSPCT . : ::.. XP_011 E-ELKPRNKK 360 >>NP_003601 (OMIM: 603343) mRNA export factor [Homo sapi (368 aa) initn: 594 init1: 211 opt: 664 Z-score: 573.5 bits: 114.6 E(85289): 3.3e-25 Smith-Waterman score: 675; 35.2% identity (68.6% similar) in 338 aa overlap (6-325:31-366) 10 20 30 pF1KE1 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS ...... :.:.:. ..::: : ..::... NP_003 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG 10 20 30 40 50 60 40 50 60 70 80 pF1KE1 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE :: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...: NP_003 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE1 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG .. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .: NP_003 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE1 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV .:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.:::::: NP_003 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE1 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI :..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: .. NP_003 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 250 260 270 280 290 270 280 290 300 310 pF1KE1 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT :: . .: .. :.. :...:. .: :::: . . . .:. . ::.:... NP_003 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA 300 310 320 330 340 350 320 pF1KE1 DAETKPKSPCT . : ::.. NP_003 E-ELKPRNKK 360 >>XP_011527391 (OMIM: 603343) PREDICTED: mRNA export fac (368 aa) initn: 594 init1: 211 opt: 664 Z-score: 573.5 bits: 114.6 E(85289): 3.3e-25 Smith-Waterman score: 675; 35.2% identity (68.6% similar) in 338 aa overlap (6-325:31-366) 10 20 30 pF1KE1 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS ...... :.:.:. ..::: : ..::... XP_011 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG 10 20 30 40 50 60 40 50 60 70 80 pF1KE1 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE :: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...: XP_011 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE1 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG .. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .: XP_011 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE1 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV .:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.:::::: XP_011 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE1 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI :..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: .. XP_011 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 250 260 270 280 290 270 280 290 300 310 pF1KE1 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT :: . .: .. :.. :...:. .: :::: . . . .:. . ::.:... XP_011 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA 300 310 320 330 340 350 320 pF1KE1 DAETKPKSPCT . : ::.. XP_011 E-ELKPRNKK 360 >>XP_005260639 (OMIM: 603343) PREDICTED: mRNA export fac (368 aa) initn: 594 init1: 211 opt: 664 Z-score: 573.5 bits: 114.6 E(85289): 3.3e-25 Smith-Waterman score: 675; 35.2% identity (68.6% similar) in 338 aa overlap (6-325:31-366) 10 20 30 pF1KE1 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS ...... :.:.:. ..::: : ..::... XP_005 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG 10 20 30 40 50 60 40 50 60 70 80 pF1KE1 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE :: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...: XP_005 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE1 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG .. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .: XP_005 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE1 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV .:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.:::::: XP_005 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE1 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI :..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: .. XP_005 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 250 260 270 280 290 270 280 290 300 310 pF1KE1 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT :: . .: .. :.. :...:. .: :::: . . . .:. . ::.:... XP_005 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA 300 310 320 330 340 350 320 pF1KE1 DAETKPKSPCT . : ::.. XP_005 E-ELKPRNKK 360 >>NP_001015885 (OMIM: 603343) mRNA export factor [Homo s (368 aa) initn: 594 init1: 211 opt: 664 Z-score: 573.5 bits: 114.6 E(85289): 3.3e-25 Smith-Waterman score: 675; 35.2% identity (68.6% similar) in 338 aa overlap (6-325:31-366) 10 20 30 pF1KE1 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS ...... :.:.:. ..::: : ..::... NP_001 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG 10 20 30 40 50 60 40 50 60 70 80 pF1KE1 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE :: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...: NP_001 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE1 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG .. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .: NP_001 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE1 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV .:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.:::::: NP_001 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE1 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI :..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: .. NP_001 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 250 260 270 280 290 270 280 290 300 310 pF1KE1 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT :: . .: .. :.. :...:. .: :::: . . . .:. . ::.:... NP_001 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA 300 310 320 330 340 350 320 pF1KE1 DAETKPKSPCT . : ::.. NP_001 E-ELKPRNKK 360 >>XP_005260640 (OMIM: 603343) PREDICTED: mRNA export fac (406 aa) initn: 594 init1: 211 opt: 664 Z-score: 573.0 bits: 114.6 E(85289): 3.6e-25 Smith-Waterman score: 675; 35.2% identity (68.6% similar) in 338 aa overlap (6-325:69-404) 10 20 30 pF1KE1 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS ...... :.:.:. ..::: : ..::... XP_005 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG 40 50 60 70 80 90 40 50 60 70 80 pF1KE1 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE :: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...: XP_005 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA 100 110 120 130 140 150 90 100 110 120 130 140 pF1KE1 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG .. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .: XP_005 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 160 170 180 190 200 210 150 160 170 180 190 200 pF1KE1 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV .:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.:::::: XP_005 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 220 230 240 250 260 270 210 220 230 240 250 260 pF1KE1 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI :..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: .. XP_005 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 280 290 300 310 320 330 270 280 290 300 310 pF1KE1 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMY-EMDDTEHPE--DGIFIRQVT :: . .: .. :.. :...:. .: :::: . . . .:. . ::.:... XP_005 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLRNAA 340 350 360 370 380 390 320 pF1KE1 DAETKPKSPCT . : ::.. XP_005 E-ELKPRNKK 400 >>XP_016883597 (OMIM: 603343) PREDICTED: mRNA export fac (357 aa) initn: 594 init1: 211 opt: 659 Z-score: 569.5 bits: 113.8 E(85289): 5.6e-25 Smith-Waterman score: 659; 36.5% identity (69.1% similar) in 307 aa overlap (6-297:31-336) 10 20 30 pF1KE1 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS ...... :.:.:. ..::: : ..::... XP_016 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG 10 20 30 40 50 60 40 50 60 70 80 pF1KE1 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE :: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...: XP_016 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE1 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG .. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .: XP_016 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE1 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV .:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.:::::: XP_016 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE1 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI :..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: .. XP_016 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 250 260 270 280 290 270 280 290 300 310 320 pF1KE1 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAE :: . .: .. :.. :...:. .: :::: XP_016 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKACCCFCVSLFEGLLCEP 300 310 320 330 340 350 pF1KE1 TKPKSPCT >>XP_011527389 (OMIM: 603343) PREDICTED: mRNA export fac (357 aa) initn: 594 init1: 211 opt: 659 Z-score: 569.5 bits: 113.8 E(85289): 5.6e-25 Smith-Waterman score: 659; 36.5% identity (69.1% similar) in 307 aa overlap (6-297:31-336) 10 20 30 pF1KE1 MTGSNEFKLNQPPEDGISSVKFSPNT--SQFLLVS ...... :.:.:. ..::: : ..::... XP_011 MSLFGTTSGFGTSGTSMFGSATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAG 10 20 30 40 50 60 40 50 60 70 80 pF1KE1 SWDTSVRLYDVPANSMRL-KYQ--HTGAVLD-CAFYDPTHAWSGGLDHQLKMHDLNTDQE :: ..:: ..: ... . : : ::: ::: : : ....... :. :: ::...: XP_011 SWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQA 70 80 90 100 110 120 90 100 110 120 130 140 pF1KE1 NLVGTHDAPIRCVEY--CPEVNVMVTGSWDQTVKLWDPRTPCNAGTFSQPEKVYTLSVSG .. ::::.. ... :. . ..:::::.:.:.:: :. ... ::. : .: XP_011 IQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY 130 140 150 160 170 180 150 160 170 180 190 200 pF1KE1 DRLIVGTAGRRVLVWDLRNMGYVQQRRESSLKYQTRCIRAFPNKQ----GYVLSSIEGRV .:.:: : ..:..:.:. .: :: ::.: ::. : .:: :..:.:::::: XP_011 PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRV 190 200 210 220 230 240 210 220 230 240 250 260 pF1KE1 AVEYLDPSPEVQKKKYAFKCHRLKENNI---EQIYPVNAISFHNIHNTFATGGSDGFVNI :..:..: :. : ...::::: . .: ..:: ::.:.:: .:.:.:: :::: .. XP_011 AIHYINP-PNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF 250 260 270 280 290 270 280 290 300 310 320 pF1KE1 WDPFNKKRLCQFHRYPTSIASLAFSNDGTTLAIASSYMYEMDDTEHPEDGIFIRQVTDAE :: . .: .. :.. :...:. .: :::: XP_011 WDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKACCCFCVSLFEGLLCEP 300 310 320 330 340 350 pF1KE1 TKPKSPCT 328 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:23:01 2016 done: Mon Nov 7 02:23:02 2016 Total Scan time: 6.390 Total Display time: 0.030 Function used was FASTA [36.3.4 Apr, 2011]