FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1362, 312 aa 1>>>pF1KE1362 312 - 312 aa - 312 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.1235+/-0.000287; mu= 4.9605+/- 0.018 mean_var=189.8847+/-38.623, 0's: 0 Z-trim(123.5): 4 B-trim: 0 in 0/61 Lambda= 0.093074 statistics sampled from 43456 (43460) to 43456 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.813), E-opt: 0.2 (0.51), width: 16 Scan time: 8.860 The best scores are: opt bits E(85289) XP_016879304 (OMIM: 603500) PREDICTED: tumor necro ( 312) 2065 288.7 1e-77 NP_001310481 (OMIM: 603500) tumor necrosis factor ( 312) 2065 288.7 1e-77 NP_003780 (OMIM: 603500) tumor necrosis factor rec ( 312) 2065 288.7 1e-77 XP_005256270 (OMIM: 603500) PREDICTED: tumor necro ( 252) 1677 236.6 4.1e-62 >>XP_016879304 (OMIM: 603500) PREDICTED: tumor necrosis (312 aa) initn: 2065 init1: 2065 opt: 2065 Z-score: 1516.4 bits: 288.7 E(85289): 1e-77 Smith-Waterman score: 2065; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312) 10 20 30 40 50 60 pF1KE1 MAAGQNGHEEWVGSAYLFVESSLDKVVLSDAYAHPQQKVAVYRALQAALAESGGSPDVLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MAAGQNGHEEWVGSAYLFVESSLDKVVLSDAYAHPQQKVAVYRALQAALAESGGSPDVLQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 MLKIHRSDPQLIVQLRFCGRQPCGRFLRAYREGALRAALQRSLAAALAQHSVPLQLELRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 MLKIHRSDPQLIVQLRFCGRQPCGRFLRAYREGALRAALQRSLAAALAQHSVPLQLELRA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GAERLDALLADEERCLSCILAQQPDRLRDEELAELEDALRNLKCGSGARGGDGEVASAPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 GAERLDALLADEERCLSCILAQQPDRLRDEELAELEDALRNLKCGSGARGGDGEVASAPL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QPPVPSLSEVKPPPPPPPAQTFLFQGQPVVNRPLSLKDQQTFARSVGLKWRKVGRSLQRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 QPPVPSLSEVKPPPPPPPAQTFLFQGQPVVNRPLSLKDQQTFARSVGLKWRKVGRSLQRG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 CRALRDPALDSLAYEYEREGLYEQAFQLLRRFVQAEGRRATLQRLVEALEENELTSLAED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CRALRDPALDSLAYEYEREGLYEQAFQLLRRFVQAEGRRATLQRLVEALEENELTSLAED 250 260 270 280 290 300 310 pF1KE1 LLGLTDPNGGLA :::::::::::: XP_016 LLGLTDPNGGLA 310 >>NP_001310481 (OMIM: 603500) tumor necrosis factor rece (312 aa) initn: 2065 init1: 2065 opt: 2065 Z-score: 1516.4 bits: 288.7 E(85289): 1e-77 Smith-Waterman score: 2065; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312) 10 20 30 40 50 60 pF1KE1 MAAGQNGHEEWVGSAYLFVESSLDKVVLSDAYAHPQQKVAVYRALQAALAESGGSPDVLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MAAGQNGHEEWVGSAYLFVESSLDKVVLSDAYAHPQQKVAVYRALQAALAESGGSPDVLQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 MLKIHRSDPQLIVQLRFCGRQPCGRFLRAYREGALRAALQRSLAAALAQHSVPLQLELRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLKIHRSDPQLIVQLRFCGRQPCGRFLRAYREGALRAALQRSLAAALAQHSVPLQLELRA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GAERLDALLADEERCLSCILAQQPDRLRDEELAELEDALRNLKCGSGARGGDGEVASAPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 GAERLDALLADEERCLSCILAQQPDRLRDEELAELEDALRNLKCGSGARGGDGEVASAPL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QPPVPSLSEVKPPPPPPPAQTFLFQGQPVVNRPLSLKDQQTFARSVGLKWRKVGRSLQRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 QPPVPSLSEVKPPPPPPPAQTFLFQGQPVVNRPLSLKDQQTFARSVGLKWRKVGRSLQRG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 CRALRDPALDSLAYEYEREGLYEQAFQLLRRFVQAEGRRATLQRLVEALEENELTSLAED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 CRALRDPALDSLAYEYEREGLYEQAFQLLRRFVQAEGRRATLQRLVEALEENELTSLAED 250 260 270 280 290 300 310 pF1KE1 LLGLTDPNGGLA :::::::::::: NP_001 LLGLTDPNGGLA 310 >>NP_003780 (OMIM: 603500) tumor necrosis factor recepto (312 aa) initn: 2065 init1: 2065 opt: 2065 Z-score: 1516.4 bits: 288.7 E(85289): 1e-77 Smith-Waterman score: 2065; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312) 10 20 30 40 50 60 pF1KE1 MAAGQNGHEEWVGSAYLFVESSLDKVVLSDAYAHPQQKVAVYRALQAALAESGGSPDVLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MAAGQNGHEEWVGSAYLFVESSLDKVVLSDAYAHPQQKVAVYRALQAALAESGGSPDVLQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 MLKIHRSDPQLIVQLRFCGRQPCGRFLRAYREGALRAALQRSLAAALAQHSVPLQLELRA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 MLKIHRSDPQLIVQLRFCGRQPCGRFLRAYREGALRAALQRSLAAALAQHSVPLQLELRA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 GAERLDALLADEERCLSCILAQQPDRLRDEELAELEDALRNLKCGSGARGGDGEVASAPL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 GAERLDALLADEERCLSCILAQQPDRLRDEELAELEDALRNLKCGSGARGGDGEVASAPL 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 QPPVPSLSEVKPPPPPPPAQTFLFQGQPVVNRPLSLKDQQTFARSVGLKWRKVGRSLQRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 QPPVPSLSEVKPPPPPPPAQTFLFQGQPVVNRPLSLKDQQTFARSVGLKWRKVGRSLQRG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 CRALRDPALDSLAYEYEREGLYEQAFQLLRRFVQAEGRRATLQRLVEALEENELTSLAED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_003 CRALRDPALDSLAYEYEREGLYEQAFQLLRRFVQAEGRRATLQRLVEALEENELTSLAED 250 260 270 280 290 300 310 pF1KE1 LLGLTDPNGGLA :::::::::::: NP_003 LLGLTDPNGGLA 310 >>XP_005256270 (OMIM: 603500) PREDICTED: tumor necrosis (252 aa) initn: 1677 init1: 1677 opt: 1677 Z-score: 1236.1 bits: 236.6 E(85289): 4.1e-62 Smith-Waterman score: 1677; 100.0% identity (100.0% similar) in 252 aa overlap (61-312:1-252) 40 50 60 70 80 90 pF1KE1 AYAHPQQKVAVYRALQAALAESGGSPDVLQMLKIHRSDPQLIVQLRFCGRQPCGRFLRAY :::::::::::::::::::::::::::::: XP_005 MLKIHRSDPQLIVQLRFCGRQPCGRFLRAY 10 20 30 100 110 120 130 140 150 pF1KE1 REGALRAALQRSLAAALAQHSVPLQLELRAGAERLDALLADEERCLSCILAQQPDRLRDE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 REGALRAALQRSLAAALAQHSVPLQLELRAGAERLDALLADEERCLSCILAQQPDRLRDE 40 50 60 70 80 90 160 170 180 190 200 210 pF1KE1 ELAELEDALRNLKCGSGARGGDGEVASAPLQPPVPSLSEVKPPPPPPPAQTFLFQGQPVV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ELAELEDALRNLKCGSGARGGDGEVASAPLQPPVPSLSEVKPPPPPPPAQTFLFQGQPVV 100 110 120 130 140 150 220 230 240 250 260 270 pF1KE1 NRPLSLKDQQTFARSVGLKWRKVGRSLQRGCRALRDPALDSLAYEYEREGLYEQAFQLLR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 NRPLSLKDQQTFARSVGLKWRKVGRSLQRGCRALRDPALDSLAYEYEREGLYEQAFQLLR 160 170 180 190 200 210 280 290 300 310 pF1KE1 RFVQAEGRRATLQRLVEALEENELTSLAEDLLGLTDPNGGLA :::::::::::::::::::::::::::::::::::::::::: XP_005 RFVQAEGRRATLQRLVEALEENELTSLAEDLLGLTDPNGGLA 220 230 240 250 312 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:25:40 2016 done: Mon Nov 7 02:25:42 2016 Total Scan time: 8.860 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]