FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6344, 355 aa 1>>>pF1KE6344 355 - 355 aa - 355 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.9075+/-0.000396; mu= 18.7951+/- 0.025 mean_var=67.6854+/-13.507, 0's: 0 Z-trim(111.5): 17 B-trim: 0 in 0/56 Lambda= 0.155893 statistics sampled from 20120 (20133) to 20120 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.609), E-opt: 0.2 (0.236), width: 16 Scan time: 5.790 The best scores are: opt bits E(85289) NP_004535 (OMIM: 256000,603835) NADH dehydrogenase ( 355) 2387 546.0 4.7e-155 NP_001308948 (OMIM: 256000,603835) NADH dehydrogen ( 375) 2226 509.8 3.9e-144 XP_011509530 (OMIM: 256000,603835) PREDICTED: NADH ( 362) 2222 508.9 7e-144 NP_001308949 (OMIM: 256000,603835) NADH dehydrogen ( 317) 1985 455.6 7e-128 NP_550438 (OMIM: 251880,601465,617068,617070) deox ( 277) 150 42.8 0.0011 >>NP_004535 (OMIM: 256000,603835) NADH dehydrogenase [ub (355 aa) initn: 2387 init1: 2387 opt: 2387 Z-score: 2904.8 bits: 546.0 E(85289): 4.7e-155 Smith-Waterman score: 2387; 100.0% identity (100.0% similar) in 355 aa overlap (1-355:1-355) 10 20 30 40 50 60 pF1KE6 MALRLLKLAATSASARVVAAGAQRVRGIHSSVQCKLRYGMWHFLLGDKASKRLTERSRVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 MALRLLKLAATSASARVVAAGAQRVRGIHSSVQCKLRYGMWHFLLGDKASKRLTERSRVI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 TVDGNICTGKGKLAKEIAEKLGFKHFPEAGIHYPDSTTGDGKPLATDYNGNCSLEKFYDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 TVDGNICTGKGKLAKEIAEKLGFKHFPEAGIHYPDSTTGDGKPLATDYNGNCSLEKFYDD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 PRSNDGNSYRLQSWLYSSRLLQYSDALEHLLTTGQGVVLERSIFSDFVFLEAMYNQGFIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 PRSNDGNSYRLQSWLYSSRLLQYSDALEHLLTTGQGVVLERSIFSDFVFLEAMYNQGFIR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 KQCVDHYNEVKSVTICDYLPPHLVIYIDVPVPEVQRRIQKKGDPHEMKITSAYLQDIENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KQCVDHYNEVKSVTICDYLPPHLVIYIDVPVPEVQRRIQKKGDPHEMKITSAYLQDIENA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 YKKTFLPEMSEKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 YKKTFLPEMSEKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQD 250 260 270 280 290 300 310 320 330 340 350 pF1KE6 KFEVLNYTSIPIFLPEVTIGAHQTDRVLHQFRELPGRKYSPGYNTEVGDKWIWLK ::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_004 KFEVLNYTSIPIFLPEVTIGAHQTDRVLHQFRELPGRKYSPGYNTEVGDKWIWLK 310 320 330 340 350 >>NP_001308948 (OMIM: 256000,603835) NADH dehydrogenase (375 aa) initn: 2222 init1: 2222 opt: 2226 Z-score: 2708.7 bits: 509.8 E(85289): 3.9e-144 Smith-Waterman score: 2226; 98.5% identity (98.8% similar) in 341 aa overlap (1-338:1-341) 10 20 30 40 50 60 pF1KE6 MALRLLKLAATSASARVVAAGAQRVRGIHSSVQCKLRYGMWHFLLGDKASKRLTERSRVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MALRLLKLAATSASARVVAAGAQRVRGIHSSVQCKLRYGMWHFLLGDKASKRLTERSRVI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 TVDGNICTGKGKLAKEIAEKLGFKHFPEAGIHYPDSTTGDGKPLATDYNGNCSLEKFYDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TVDGNICTGKGKLAKEIAEKLGFKHFPEAGIHYPDSTTGDGKPLATDYNGNCSLEKFYDD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 PRSNDGNSYRLQSWLYSSRLLQYSDALEHLLTTGQGVVLERSIFSDFVFLEAMYNQGFIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PRSNDGNSYRLQSWLYSSRLLQYSDALEHLLTTGQGVVLERSIFSDFVFLEAMYNQGFIR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 KQCVDHYNEVKSVTICDYLPPHLVIYIDVPVPEVQRRIQKKGDPHEMKITSAYLQDIENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KQCVDHYNEVKSVTICDYLPPHLVIYIDVPVPEVQRRIQKKGDPHEMKITSAYLQDIENA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 YKKTFLPEMSEKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 YKKTFLPEMSEKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQD 250 260 270 280 290 300 310 320 330 340 350 pF1KE6 KFEVLNYTSIPIFLPEVTIGAHQTDRVLHQFRELP---GRKYSPGYNTEVGDKWIWLK :::::::::::::::::::::::::::::::::. ::: NP_001 KFEVLNYTSIPIFLPEVTIGAHQTDRVLHQFREFSLFNGRKPDAVKILCSLLEADRSLLE 310 320 330 340 350 360 NP_001 ADRSLLEADRVQDSC 370 >>XP_011509530 (OMIM: 256000,603835) PREDICTED: NADH deh (362 aa) initn: 2222 init1: 2222 opt: 2222 Z-score: 2704.1 bits: 508.9 E(85289): 7e-144 Smith-Waterman score: 2222; 99.7% identity (100.0% similar) in 334 aa overlap (1-334:1-334) 10 20 30 40 50 60 pF1KE6 MALRLLKLAATSASARVVAAGAQRVRGIHSSVQCKLRYGMWHFLLGDKASKRLTERSRVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 MALRLLKLAATSASARVVAAGAQRVRGIHSSVQCKLRYGMWHFLLGDKASKRLTERSRVI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 TVDGNICTGKGKLAKEIAEKLGFKHFPEAGIHYPDSTTGDGKPLATDYNGNCSLEKFYDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 TVDGNICTGKGKLAKEIAEKLGFKHFPEAGIHYPDSTTGDGKPLATDYNGNCSLEKFYDD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 PRSNDGNSYRLQSWLYSSRLLQYSDALEHLLTTGQGVVLERSIFSDFVFLEAMYNQGFIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 PRSNDGNSYRLQSWLYSSRLLQYSDALEHLLTTGQGVVLERSIFSDFVFLEAMYNQGFIR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 KQCVDHYNEVKSVTICDYLPPHLVIYIDVPVPEVQRRIQKKGDPHEMKITSAYLQDIENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KQCVDHYNEVKSVTICDYLPPHLVIYIDVPVPEVQRRIQKKGDPHEMKITSAYLQDIENA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 YKKTFLPEMSEKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 YKKTFLPEMSEKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQD 250 260 270 280 290 300 310 320 330 340 350 pF1KE6 KFEVLNYTSIPIFLPEVTIGAHQTDRVLHQFRELPGRKYSPGYNTEVGDKWIWLK :::::::::::::::::::::::::::::::::. XP_011 KFEVLNYTSIPIFLPEVTIGAHQTDRVLHQFREVFQESEAKRLDVEEVCWKKTPLKDRGE 310 320 330 340 350 360 XP_011 EV >>NP_001308949 (OMIM: 256000,603835) NADH dehydrogenase (317 aa) initn: 1984 init1: 1984 opt: 1985 Z-score: 2416.8 bits: 455.6 E(85289): 7e-128 Smith-Waterman score: 1985; 97.1% identity (98.1% similar) in 308 aa overlap (1-308:1-308) 10 20 30 40 50 60 pF1KE6 MALRLLKLAATSASARVVAAGAQRVRGIHSSVQCKLRYGMWHFLLGDKASKRLTERSRVI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MALRLLKLAATSASARVVAAGAQRVRGIHSSVQCKLRYGMWHFLLGDKASKRLTERSRVI 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 TVDGNICTGKGKLAKEIAEKLGFKHFPEAGIHYPDSTTGDGKPLATDYNGNCSLEKFYDD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TVDGNICTGKGKLAKEIAEKLGFKHFPEAGIHYPDSTTGDGKPLATDYNGNCSLEKFYDD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 PRSNDGNSYRLQSWLYSSRLLQYSDALEHLLTTGQGVVLERSIFSDFVFLEAMYNQGFIR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PRSNDGNSYRLQSWLYSSRLLQYSDALEHLLTTGQGVVLERSIFSDFVFLEAMYNQGFIR 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 KQCVDHYNEVKSVTICDYLPPHLVIYIDVPVPEVQRRIQKKGDPHEMKITSAYLQDIENA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 KQCVDHYNEVKSVTICDYLPPHLVIYIDVPVPEVQRRIQKKGDPHEMKITSAYLQDIENA 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE6 YKKTFLPEMSEKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQD ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: . NP_001 YKKTFLPEMSEKCEVLQYSAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLCRA 250 260 270 280 290 300 310 320 330 340 350 pF1KE6 KFEVLNYTSIPIFLPEVTIGAHQTDRVLHQFRELPGRKYSPGYNTEVGDKWIWLK .:. : NP_001 ASTALGTTPRWETSGSG 310 >>NP_550438 (OMIM: 251880,601465,617068,617070) deoxygua (277 aa) initn: 93 init1: 44 opt: 150 Z-score: 187.2 bits: 42.8 E(85289): 0.0011 Smith-Waterman score: 150; 23.7% identity (57.7% similar) in 194 aa overlap (58-242:39-227) 30 40 50 60 70 80 pF1KE6 IHSSVQCKLRYGMWHFLLGDKASKRLTERSRVITVDGNICTGKGKLAKEIAEKLGFKHFP : ....::: .::. ..: ... : NP_550 SRLRAPFSSMAKSPLEGVSSSRGLHAGRGPRRLSIEGNIAVGKSTFVKLLTKTYPEWHVA 10 20 30 40 50 60 90 100 110 120 130 140 pF1KE6 EAGIHYPDS--TTGDGKPLATDYNGNCSLEKFYDDPRSNDGNSYRLQSWLYSSRL-LQYS . .. ..: : ... :: :. .: .: :: .:.. . ::: .: NP_550 TEPVATWQNIQAAGTQKACTAQSLGNL-LDMMYREPAR---WSYTFQTFSFLSRLKVQLE 70 80 90 100 110 120 150 160 170 180 190 pF1KE6 DALEHLLTTGQGV-VLERSIFSD-FVFLEAMYNQGFIRKQCVDHYNEVKSVTICDY---L :.:: . . : ..:::..:: ..: . ....: . :.. .: . .. . NP_550 PFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFASRI 130 140 150 160 170 180 200 210 220 230 240 250 pF1KE6 PPHLVIYIDVPVPEV-QRRIQKKGDPHEMKITSAYLQDIENAYKKTFLPEMSEKCEVLQY : ::... :.: .:. ... .: : :::..... .. NP_550 TLHGFIYLQAS-PQVCLKRLYQRAREEEKGIELAYLEQLHGQHEAWLIHKTTKLHFEALM 190 200 210 220 230 240 260 270 280 290 300 310 pF1KE6 SAREAQDSKKVVEDIEYLKFDKGPWLKQDNRTLYHLRLLVQDKFEVLNYTSIPIFLPEVT NP_550 NIPVLVLDVNDDFSEEVTKQEDLMREVNTFVKNL 250 260 270 355 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 12:18:24 2016 done: Tue Nov 8 12:18:25 2016 Total Scan time: 5.790 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]