Result of FASTA (ccds) for pFN21AE1407
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1407, 325 aa
  1>>>pF1KE1407 325 - 325 aa - 325 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0591+/-0.000712; mu= 17.3639+/- 0.043
 mean_var=71.5493+/-14.755, 0's: 0 Z-trim(109.8): 33  B-trim: 0 in 0/51
 Lambda= 0.151625
 statistics sampled from 11091 (11122) to 11091 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.342), width:  16
 Scan time:  2.340

The best scores are:                                      opt bits E(32554)
CCDS13623.1 IL10RB gene_id:3588|Hs108|chr21        ( 325) 2290 509.8 1.2e-144
CCDS33544.1 IFNGR2 gene_id:3460|Hs108|chr21        ( 337)  306 75.8 5.3e-14
CCDS82660.1 IFNGR2 gene_id:3460|Hs108|chr21        ( 356)  306 75.8 5.6e-14
CCDS13624.1 IFNAR1 gene_id:3454|Hs108|chr21        ( 557)  298 74.2 2.6e-13


>>CCDS13623.1 IL10RB gene_id:3588|Hs108|chr21             (325 aa)
 initn: 2290 init1: 2290 opt: 2290  Z-score: 2710.5  bits: 509.8 E(32554): 1.2e-144
Smith-Waterman score: 2290; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KE1 MAWSLGSWLGGCLLVSALGMVPPPENVRMNSVNFKNILQWESPAFAKGNLTFTAQYLSYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MAWSLGSWLGGCLLVSALGMVPPPENVRMNSVNFKNILQWESPAFAKGNLTFTAQYLSYR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 IFQDKCMNTTLTECDFSSLSKYGDHTLRVRAEFADEHSDWVNITFCPVDDTIIGPPGMQV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 IFQDKCMNTTLTECDFSSLSKYGDHTLRVRAEFADEHSDWVNITFCPVDDTIIGPPGMQV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 EVLADSLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKNGTDEKFQITPQYDFEVLRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EVLADSLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKNGTDEKFQITPQYDFEVLRN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 LEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETVPSWMVAVILMASVFMVCLALLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETVPSWMVAVILMASVFMVCLALLG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 CFALLWCVYKKTKYAFSPRNSLPQHLKEFLGHPHHNTLLFFSFPLSDENDVFDKLSVIAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 CFALLWCVYKKTKYAFSPRNSLPQHLKEFLGHPHHNTLLFFSFPLSDENDVFDKLSVIAE
              250       260       270       280       290       300

              310       320     
pF1KE1 DSESGKQNPGDSCSLGTPPGQGPQS
       :::::::::::::::::::::::::
CCDS13 DSESGKQNPGDSCSLGTPPGQGPQS
              310       320     

>>CCDS33544.1 IFNGR2 gene_id:3460|Hs108|chr21             (337 aa)
 initn: 190 init1:  73 opt: 306  Z-score: 364.8  bits: 75.8 E(32554): 5.3e-14
Smith-Waterman score: 335; 25.7% identity (56.0% similar) in 327 aa overlap (1-299:5-324)

                   10             20        30        40           
pF1KE1     MAWSLGSWLGGCLLVSA-----LGMVPPPENVRMNSVNFKNILQWESPAFAKGN--
           . :::   ::    ..:     :...: :.. ..   : ...:.::  :.....  
CCDS33 MRPTLLWSLLLLLGVFAAAAAAPPDPLSQLPAPQHPKIRLYNAEQVLSWEPVALSNSTRP
               10        20        30        40        50        60

      50          60               70        80              90    
pF1KE1 LTFTAQ--YLSYRIFQD-------KCMNTTLTECDFSSLSKYGDH------TLRVRAEFA
       ... .:  : . . :         .: . : :::::.. :  .        :::.:::..
CCDS33 VVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASPSAGFPMDFNVTLRLRAELG
               70        80        90       100       110       120

          100        110        120       130       140       150  
pF1KE1 DEHSDWVNIT-FCPVDDTIIGPP-GMQVEVLADSLHMRFLAPKIENEYETWTMKNVYNSW
         :: ::..  :    .. .::: ...:     :: .:: .:     ..    ....  .
CCDS33 ALHSAWVTMPWFQHYRNVTVGPPENIEVTPGEGSLIIRFSSP-----FDIADTSTAF--F
              130       140       150       160            170     

            160       170       180       190           200        
pF1KE1 TYNVQYWKNGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRG-FLPDRN---KAGEWSEPV
        : :.::..:  .. .   . .   : ::.:  .::.::.. .: ...   ..:. :.  
CCDS33 CYYVHYWEKGGIQQVKGPFRSNSISLDNLKPSRVYCLQVQAQLLWNKSNIFRVGHLSNIS
           180       190       200       210       220       230   

      210       220       230       240       250       260        
pF1KE1 CEQTTHDETVPSWMVAVILMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKE
       : .:  : ..   .: .: ...  .. .   .:: :.       :: :    :.: ...:
CCDS33 CYETMADASTELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWFHTPPSIPLQIEE
           240       250       260       270       280       290   

      270       280       290       300       310       320     
pF1KE1 FLGHPHHNTLLFFSFPLSDENDVFDKLSVIAEDSESGKQNPGDSCSLGTPPGQGPQS
       .:  : .  :  ..   : ..::.:..:.:.                          
CCDS33 YLKDPTQPILEALDKDSSPKDDVWDSVSIISFPEKEQEDVLQTL             
           300       310       320       330                    

>>CCDS82660.1 IFNGR2 gene_id:3460|Hs108|chr21             (356 aa)
 initn: 190 init1:  73 opt: 306  Z-score: 364.5  bits: 75.8 E(32554): 5.6e-14
Smith-Waterman score: 329; 25.6% identity (57.0% similar) in 305 aa overlap (18-299:46-343)

                            10        20        30        40       
pF1KE1              MAWSLGSWLGGCLLVSALGMVPPPENVRMNSVNFKNILQWESPAFAK
                                     :...: :.. ..   : ...:.::  :...
CCDS82 FAAAAAAPPAQLTLETYQEWCNDSAATHDPLSQLPAPQHPKIRLYNAEQVLSWEPVALSN
          20        30        40        50        60        70     

          50          60               70        80              90
pF1KE1 GN--LTFTAQ--YLSYRIFQD-------KCMNTTLTECDFSSLSKYGDH------TLRVR
       ..  ... .:  : . . :         .: . : :::::.. :  .        :::.:
CCDS82 STRPVVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASPSAGFPMDFNVTLRLR
          80        90       100       110       120       130     

              100        110        120       130       140        
pF1KE1 AEFADEHSDWVNIT-FCPVDDTIIGPP-GMQVEVLADSLHMRFLAPKIENEYETWTMKNV
       ::..  :: ::..  :    .. .::: ...:     :: .:: .:     ..    ...
CCDS82 AELGALHSAWVTMPWFQHYRNVTVGPPENIEVTPGEGSLIIRFSSP-----FDIADTSTA
         140       150       160       170       180            190

      150       160       170       180       190           200    
pF1KE1 YNSWTYNVQYWKNGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRG-FLPDRN---KAGEW
       .  . : :.::..:  .. .   . .   : ::.:  .::.::.. .: ...   ..:. 
CCDS82 F--FCYYVHYWEKGGIQQVKGPFRSNSISLDNLKPSRVYCLQVQAQLLWNKSNIFRVGHL
                200       210       220       230       240        

          210       220       230       240       250       260    
pF1KE1 SEPVCEQTTHDETVPSWMVAVILMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQ
       :.  : .:  : ..   .: .: ...  .. .   .:: :.       :: :    :.: 
CCDS82 SNISCYETMADASTELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWFHTPPSIPL
      250       260       270       280       290       300        

          270       280       290       300       310       320    
pF1KE1 HLKEFLGHPHHNTLLFFSFPLSDENDVFDKLSVIAEDSESGKQNPGDSCSLGTPPGQGPQ
       ...:.:  : .  :  ..   : ..::.:..:.:.                         
CCDS82 QIEEYLKDPTQPILEALDKDSSPKDDVWDSVSIISFPEKEQEDVLQTL            
      310       320       330       340       350                  

        
pF1KE1 S

>>CCDS13624.1 IFNAR1 gene_id:3454|Hs108|chr21             (557 aa)
 initn: 254 init1: 121 opt: 298  Z-score: 352.3  bits: 74.2 E(32554): 2.6e-13
Smith-Waterman score: 330; 25.5% identity (59.9% similar) in 302 aa overlap (23-308:231-521)

                       10        20        30        40        50  
pF1KE1         MAWSLGSWLGGCLLVSALGMVPPPENVRMNSVNFKNILQWESPAFAKGNLTF
                                     ::::....  : . .:.:.   .. .:.::
CCDS13 KVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWD---YTYANMTF
              210       220       230       240          250       

                        60         70         80        90         
pF1KE1 TAQYLS-----------YRIFQ-DKCMNTTLTECDF-SSLSKYGDHTLRVRAEFADEHSD
        .:.:            :.  :   : :.  :.: : ... . : . :::.:  ... : 
CCDS13 QVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSF
       260       270       280       290       300       310       

     100        110       120       130       140       150        
pF1KE1 WVN-ITFCPVDDTIIGPPGMQVEVLADSLHMRFLAPKIENEYETWTMKNVYNSWTYNVQY
       : . : :    .... :: .... :.::.:. . :::  .  .: ....      :.. .
CCDS13 WSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSG--NTPVIQDY--PLIYEIIF
       320       330       340       350         360         370   

      160       170       180       190         200       210      
pF1KE1 WKNGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLPDR--NKAGEWSEPVCEQTTHDE
       :.: .. . .:  .    .. ::.: :.:::..:.   :.  ::.. .:. :::.:   .
CCDS13 WENTSNAERKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGN
           380       390       400       410       420       430   

        220       230       240       250       260       270      
pF1KE1 TVPSWMVAVILMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKEFLGHPHHN
       :   :... : .: .: . ... .  ..: :.      ...: .:. ....:   .: .:
CCDS13 TSKIWLIVGICIA-LFALPFVIYAAKVFLRCINYVFFPSLKPSSSIDEYFSE---QPLKN
           440        450       460       470       480            

        280       290       300       310       320                
pF1KE1 TLLFFSFPLSDENDVFDKLSVIAEDSESGKQNPGDSCSLGTPPGQGPQS           
        ::  :    ..  .....:.::   :... .                            
CCDS13 LLLSTSEEQIEKCFIIENISTIATVEETNQTDEDHKKYSSQTSQDSGNYSNEDESESKTS
     490       500       510       520       530       540         

CCDS13 EELQQDFV
     550       

>--
 initn: 254 init1: 121 opt: 298  Z-score: 352.3  bits: 74.2 E(32554): 2.6e-13
Smith-Waterman score: 298; 29.9% identity (59.4% similar) in 224 aa overlap (3-219:19-230)

                               10        20        30        40    
pF1KE1                 MAWSLGSWLGGCLLVSALGMVPPPENVRMNSVNFKNILQWESPA
                         : :..  ::  : :       :..:... .. . ::.:.   
CCDS13 MMVVLLGATTLVLVAVAPWVLSAAAGGKNLKS-------PQKVEVDIIDDNFILRWNRSD
               10        20        30               40        50   

           50            60        70          80        90        
pF1KE1 FAKGNLTFTAQY----LSYRIFQDKCMNTTLTECDFSSL--SKYGDHTLRVRAEFADEHS
        . ::.::. .:    ..  :  . :.: : :.:.::::  . : .  ::.:::  .. :
CCDS13 ESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAE-KENTS
            60        70        80        90       100        110  

      100        110       120       130       140       150       
pF1KE1 DWVNI-TFCPVDDTIIGPPGMQVEVLADSLHMRFLAPKIENEYETWTMKNVYNSWTYNVQ
       .: .. .: :   . :::: ...:.  :.  .  ..:  ..    :.. ..  :.::.. 
CCDS13 SWYEVDSFTPFRKAQIGPPEVHLEA-EDKAIVIHISPGTKDSV-MWALDGL--SFTYSLV
            120       130        140       150        160          

       160       170       180       190       200       210       
pF1KE1 YWKNGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDET
        :::..  . .:   :. . . .: : ::::..:.. :    : : .:   : .:: .. 
CCDS13 IWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENE
      170       180       190       200       210       220        

       220       230       240       250       260       270       
pF1KE1 VPSWMVAVILMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKEFLGHPHHNT
       .:                                                          
CCDS13 LPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKT
      230       240       250       260       270       280        




325 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:46:24 2016 done: Mon Nov  7 02:46:24 2016
 Total Scan time:  2.340 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]
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