FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1407, 325 aa 1>>>pF1KE1407 325 - 325 aa - 325 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0591+/-0.000712; mu= 17.3639+/- 0.043 mean_var=71.5493+/-14.755, 0's: 0 Z-trim(109.8): 33 B-trim: 0 in 0/51 Lambda= 0.151625 statistics sampled from 11091 (11122) to 11091 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.721), E-opt: 0.2 (0.342), width: 16 Scan time: 2.340 The best scores are: opt bits E(32554) CCDS13623.1 IL10RB gene_id:3588|Hs108|chr21 ( 325) 2290 509.8 1.2e-144 CCDS33544.1 IFNGR2 gene_id:3460|Hs108|chr21 ( 337) 306 75.8 5.3e-14 CCDS82660.1 IFNGR2 gene_id:3460|Hs108|chr21 ( 356) 306 75.8 5.6e-14 CCDS13624.1 IFNAR1 gene_id:3454|Hs108|chr21 ( 557) 298 74.2 2.6e-13 >>CCDS13623.1 IL10RB gene_id:3588|Hs108|chr21 (325 aa) initn: 2290 init1: 2290 opt: 2290 Z-score: 2710.5 bits: 509.8 E(32554): 1.2e-144 Smith-Waterman score: 2290; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325) 10 20 30 40 50 60 pF1KE1 MAWSLGSWLGGCLLVSALGMVPPPENVRMNSVNFKNILQWESPAFAKGNLTFTAQYLSYR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MAWSLGSWLGGCLLVSALGMVPPPENVRMNSVNFKNILQWESPAFAKGNLTFTAQYLSYR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 IFQDKCMNTTLTECDFSSLSKYGDHTLRVRAEFADEHSDWVNITFCPVDDTIIGPPGMQV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 IFQDKCMNTTLTECDFSSLSKYGDHTLRVRAEFADEHSDWVNITFCPVDDTIIGPPGMQV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 EVLADSLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKNGTDEKFQITPQYDFEVLRN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 EVLADSLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKNGTDEKFQITPQYDFEVLRN 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 LEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETVPSWMVAVILMASVFMVCLALLG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 LEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETVPSWMVAVILMASVFMVCLALLG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 CFALLWCVYKKTKYAFSPRNSLPQHLKEFLGHPHHNTLLFFSFPLSDENDVFDKLSVIAE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 CFALLWCVYKKTKYAFSPRNSLPQHLKEFLGHPHHNTLLFFSFPLSDENDVFDKLSVIAE 250 260 270 280 290 300 310 320 pF1KE1 DSESGKQNPGDSCSLGTPPGQGPQS ::::::::::::::::::::::::: CCDS13 DSESGKQNPGDSCSLGTPPGQGPQS 310 320 >>CCDS33544.1 IFNGR2 gene_id:3460|Hs108|chr21 (337 aa) initn: 190 init1: 73 opt: 306 Z-score: 364.8 bits: 75.8 E(32554): 5.3e-14 Smith-Waterman score: 335; 25.7% identity (56.0% similar) in 327 aa overlap (1-299:5-324) 10 20 30 40 pF1KE1 MAWSLGSWLGGCLLVSA-----LGMVPPPENVRMNSVNFKNILQWESPAFAKGN-- . ::: :: ..: :...: :.. .. : ...:.:: :..... CCDS33 MRPTLLWSLLLLLGVFAAAAAAPPDPLSQLPAPQHPKIRLYNAEQVLSWEPVALSNSTRP 10 20 30 40 50 60 50 60 70 80 90 pF1KE1 LTFTAQ--YLSYRIFQD-------KCMNTTLTECDFSSLSKYGDH------TLRVRAEFA ... .: : . . : .: . : :::::.. : . :::.:::.. CCDS33 VVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASPSAGFPMDFNVTLRLRAELG 70 80 90 100 110 120 100 110 120 130 140 150 pF1KE1 DEHSDWVNIT-FCPVDDTIIGPP-GMQVEVLADSLHMRFLAPKIENEYETWTMKNVYNSW :: ::.. : .. .::: ...: :: .:: .: .. .... . CCDS33 ALHSAWVTMPWFQHYRNVTVGPPENIEVTPGEGSLIIRFSSP-----FDIADTSTAF--F 130 140 150 160 170 160 170 180 190 200 pF1KE1 TYNVQYWKNGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRG-FLPDRN---KAGEWSEPV : :.::..: .. . . . : ::.: .::.::.. .: ... ..:. :. CCDS33 CYYVHYWEKGGIQQVKGPFRSNSISLDNLKPSRVYCLQVQAQLLWNKSNIFRVGHLSNIS 180 190 200 210 220 230 210 220 230 240 250 260 pF1KE1 CEQTTHDETVPSWMVAVILMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKE : .: : .. .: .: ... .. . .:: :. :: : :.: ...: CCDS33 CYETMADASTELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWFHTPPSIPLQIEE 240 250 260 270 280 290 270 280 290 300 310 320 pF1KE1 FLGHPHHNTLLFFSFPLSDENDVFDKLSVIAEDSESGKQNPGDSCSLGTPPGQGPQS .: : . : .. : ..::.:..:.:. CCDS33 YLKDPTQPILEALDKDSSPKDDVWDSVSIISFPEKEQEDVLQTL 300 310 320 330 >>CCDS82660.1 IFNGR2 gene_id:3460|Hs108|chr21 (356 aa) initn: 190 init1: 73 opt: 306 Z-score: 364.5 bits: 75.8 E(32554): 5.6e-14 Smith-Waterman score: 329; 25.6% identity (57.0% similar) in 305 aa overlap (18-299:46-343) 10 20 30 40 pF1KE1 MAWSLGSWLGGCLLVSALGMVPPPENVRMNSVNFKNILQWESPAFAK :...: :.. .. : ...:.:: :... CCDS82 FAAAAAAPPAQLTLETYQEWCNDSAATHDPLSQLPAPQHPKIRLYNAEQVLSWEPVALSN 20 30 40 50 60 70 50 60 70 80 90 pF1KE1 GN--LTFTAQ--YLSYRIFQD-------KCMNTTLTECDFSSLSKYGDH------TLRVR .. ... .: : . . : .: . : :::::.. : . :::.: CCDS82 STRPVVYQVQFKYTDSKWFTADIMSIGVNCTQITATECDFTAASPSAGFPMDFNVTLRLR 80 90 100 110 120 130 100 110 120 130 140 pF1KE1 AEFADEHSDWVNIT-FCPVDDTIIGPP-GMQVEVLADSLHMRFLAPKIENEYETWTMKNV ::.. :: ::.. : .. .::: ...: :: .:: .: .. ... CCDS82 AELGALHSAWVTMPWFQHYRNVTVGPPENIEVTPGEGSLIIRFSSP-----FDIADTSTA 140 150 160 170 180 190 150 160 170 180 190 200 pF1KE1 YNSWTYNVQYWKNGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRG-FLPDRN---KAGEW . . : :.::..: .. . . . : ::.: .::.::.. .: ... ..:. CCDS82 F--FCYYVHYWEKGGIQQVKGPFRSNSISLDNLKPSRVYCLQVQAQLLWNKSNIFRVGHL 200 210 220 230 240 210 220 230 240 250 260 pF1KE1 SEPVCEQTTHDETVPSWMVAVILMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQ :. : .: : .. .: .: ... .. . .:: :. :: : :.: CCDS82 SNISCYETMADASTELQQVILISVGTFSLLSVLAGACFFLVLKYRGLIKYWFHTPPSIPL 250 260 270 280 290 300 270 280 290 300 310 320 pF1KE1 HLKEFLGHPHHNTLLFFSFPLSDENDVFDKLSVIAEDSESGKQNPGDSCSLGTPPGQGPQ ...:.: : . : .. : ..::.:..:.:. CCDS82 QIEEYLKDPTQPILEALDKDSSPKDDVWDSVSIISFPEKEQEDVLQTL 310 320 330 340 350 pF1KE1 S >>CCDS13624.1 IFNAR1 gene_id:3454|Hs108|chr21 (557 aa) initn: 254 init1: 121 opt: 298 Z-score: 352.3 bits: 74.2 E(32554): 2.6e-13 Smith-Waterman score: 330; 25.5% identity (59.9% similar) in 302 aa overlap (23-308:231-521) 10 20 30 40 50 pF1KE1 MAWSLGSWLGGCLLVSALGMVPPPENVRMNSVNFKNILQWESPAFAKGNLTF ::::.... : . .:.:. .. .:.:: CCDS13 KVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWD---YTYANMTF 210 220 230 240 250 60 70 80 90 pF1KE1 TAQYLS-----------YRIFQ-DKCMNTTLTECDF-SSLSKYGDHTLRVRAEFADEHSD .:.: :. : : :. :.: : ... . : . :::.: ... : CCDS13 QVQWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSF 260 270 280 290 300 310 100 110 120 130 140 150 pF1KE1 WVN-ITFCPVDDTIIGPPGMQVEVLADSLHMRFLAPKIENEYETWTMKNVYNSWTYNVQY : . : : .... :: .... :.::.:. . ::: . .: .... :.. . CCDS13 WSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSG--NTPVIQDY--PLIYEIIF 320 330 340 350 360 370 160 170 180 190 200 210 pF1KE1 WKNGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLPDR--NKAGEWSEPVCEQTTHDE :.: .. . .: . .. ::.: :.:::..:. :. ::.. .:. :::.: . CCDS13 WENTSNAERKIIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGN 380 390 400 410 420 430 220 230 240 250 260 270 pF1KE1 TVPSWMVAVILMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKEFLGHPHHN : :... : .: .: . ... . ..: :. ...: .:. ....: .: .: CCDS13 TSKIWLIVGICIA-LFALPFVIYAAKVFLRCINYVFFPSLKPSSSIDEYFSE---QPLKN 440 450 460 470 480 280 290 300 310 320 pF1KE1 TLLFFSFPLSDENDVFDKLSVIAEDSESGKQNPGDSCSLGTPPGQGPQS :: : .. .....:.:: :... . CCDS13 LLLSTSEEQIEKCFIIENISTIATVEETNQTDEDHKKYSSQTSQDSGNYSNEDESESKTS 490 500 510 520 530 540 CCDS13 EELQQDFV 550 >-- initn: 254 init1: 121 opt: 298 Z-score: 352.3 bits: 74.2 E(32554): 2.6e-13 Smith-Waterman score: 298; 29.9% identity (59.4% similar) in 224 aa overlap (3-219:19-230) 10 20 30 40 pF1KE1 MAWSLGSWLGGCLLVSALGMVPPPENVRMNSVNFKNILQWESPA : :.. :: : : :..:... .. . ::.:. CCDS13 MMVVLLGATTLVLVAVAPWVLSAAAGGKNLKS-------PQKVEVDIIDDNFILRWNRSD 10 20 30 40 50 50 60 70 80 90 pF1KE1 FAKGNLTFTAQY----LSYRIFQDKCMNTTLTECDFSSL--SKYGDHTLRVRAEFADEHS . ::.::. .: .. : . :.: : :.:.:::: . : . ::.::: .. : CCDS13 ESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAE-KENTS 60 70 80 90 100 110 100 110 120 130 140 150 pF1KE1 DWVNI-TFCPVDDTIIGPPGMQVEVLADSLHMRFLAPKIENEYETWTMKNVYNSWTYNVQ .: .. .: : . :::: ...:. :. . ..: .. :.. .. :.::.. CCDS13 SWYEVDSFTPFRKAQIGPPEVHLEA-EDKAIVIHISPGTKDSV-MWALDGL--SFTYSLV 120 130 140 150 160 160 170 180 190 200 210 pF1KE1 YWKNGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDET :::.. . .: :. . . .: : ::::..:.. : : : .: : .:: .. CCDS13 IWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENE 170 180 190 200 210 220 220 230 240 250 260 270 pF1KE1 VPSWMVAVILMASVFMVCLALLGCFALLWCVYKKTKYAFSPRNSLPQHLKEFLGHPHHNT .: CCDS13 LPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVKT 230 240 250 260 270 280 325 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:46:24 2016 done: Mon Nov 7 02:46:24 2016 Total Scan time: 2.340 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]