Result of FASTA (omim) for
pFN21AE5104
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5104, 117 aa
1>>>pF1KE5104 117 - 117 aa - 117 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8801+/-0.000311; mu= 12.6145+/- 0.019
mean_var=56.4116+/-11.253, 0's: 0 Z-trim(115.6): 8 B-trim: 0 in 0/50
Lambda= 0.170762
statistics sampled from 26087 (26095) to 26087 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.306), width: 16
Scan time: 4.240
The best scores are: opt bits E(85289)
NP_001306161 (OMIM: 616862) 60S ribosomal protein ( 117) 756 193.7 5.7e-50
NP_001306164 (OMIM: 616862) 60S ribosomal protein ( 117) 756 193.7 5.7e-50
NP_296374 (OMIM: 616862) 60S ribosomal protein L34 ( 117) 756 193.7 5.7e-50
NP_001306165 (OMIM: 616862) 60S ribosomal protein ( 117) 756 193.7 5.7e-50
NP_001306163 (OMIM: 616862) 60S ribosomal protein ( 117) 756 193.7 5.7e-50
NP_000986 (OMIM: 616862) 60S ribosomal protein L34 ( 117) 756 193.7 5.7e-50
>>NP_001306161 (OMIM: 616862) 60S ribosomal protein L34 (117 aa)
initn: 756 init1: 756 opt: 756 Z-score: 1018.1 bits: 193.7 E(85289): 5.7e-50
Smith-Waterman score: 756; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)
10 20 30 40 50 60
pF1KE5 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK
70 80 90 100 110
>>NP_001306164 (OMIM: 616862) 60S ribosomal protein L34 (117 aa)
initn: 756 init1: 756 opt: 756 Z-score: 1018.1 bits: 193.7 E(85289): 5.7e-50
Smith-Waterman score: 756; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)
10 20 30 40 50 60
pF1KE5 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK
70 80 90 100 110
>>NP_296374 (OMIM: 616862) 60S ribosomal protein L34 [Ho (117 aa)
initn: 756 init1: 756 opt: 756 Z-score: 1018.1 bits: 193.7 E(85289): 5.7e-50
Smith-Waterman score: 756; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)
10 20 30 40 50 60
pF1KE5 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_296 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_296 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK
70 80 90 100 110
>>NP_001306165 (OMIM: 616862) 60S ribosomal protein L34 (117 aa)
initn: 756 init1: 756 opt: 756 Z-score: 1018.1 bits: 193.7 E(85289): 5.7e-50
Smith-Waterman score: 756; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)
10 20 30 40 50 60
pF1KE5 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK
70 80 90 100 110
>>NP_001306163 (OMIM: 616862) 60S ribosomal protein L34 (117 aa)
initn: 756 init1: 756 opt: 756 Z-score: 1018.1 bits: 193.7 E(85289): 5.7e-50
Smith-Waterman score: 756; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)
10 20 30 40 50 60
pF1KE5 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK
70 80 90 100 110
>>NP_000986 (OMIM: 616862) 60S ribosomal protein L34 [Ho (117 aa)
initn: 756 init1: 756 opt: 756 Z-score: 1018.1 bits: 193.7 E(85289): 5.7e-50
Smith-Waterman score: 756; 100.0% identity (100.0% similar) in 117 aa overlap (1-117:1-117)
10 20 30 40 50 60
pF1KE5 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MVQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPGRLRGVRAVR
10 20 30 40 50 60
70 80 90 100 110
pF1KE5 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 PKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQKIVVKVLKAQAQSQKAK
70 80 90 100 110
117 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 21:06:54 2016 done: Mon Nov 7 21:06:54 2016
Total Scan time: 4.240 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]