FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1378, 249 aa
  1>>>pF1KE1378 249 - 249 aa - 249 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5766+/-0.000695; mu= 13.5398+/- 0.042
 mean_var=69.6388+/-13.590, 0's: 0 Z-trim(110.5): 7  B-trim: 0 in 0/51
 Lambda= 0.153691
 statistics sampled from 11679 (11680) to 11679 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.359), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS11842.1 NDUFV2 gene_id:4729|Hs108|chr18        ( 249) 1688 382.7 1.3e-106


>>CCDS11842.1 NDUFV2 gene_id:4729|Hs108|chr18             (249 aa)
 initn: 1688 init1: 1688 opt: 1688  Z-score: 2027.7  bits: 382.7 E(32554): 1.3e-106
Smith-Waterman score: 1688; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)

               10        20        30        40        50        60
pF1KE1 MFFSAALRARAAGLTAHWGRHVRNLHKTVMQNGAGGALFVHRDTPENNPDTPFDFTPENY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MFFSAALRARAAGLTAHWGRHVRNLHKTVMQNGAGGALFVHRDTPENNPDTPFDFTPENY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 KRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEVLQVPPMRVYEVATFYT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 MYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGAC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGAC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 VNAPMVQINDNYYEDLTAKDIEEIIDELKAGKIPKPGPRSGRFSCEPAGGLTSLTEPPKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VNAPMVQINDNYYEDLTAKDIEEIIDELKAGKIPKPGPRSGRFSCEPAGGLTSLTEPPKG
              190       200       210       220       230       240

                
pF1KE1 PGFGVQAGL
       :::::::::
CCDS11 PGFGVQAGL
                




249 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:48:17 2016 done: Mon Nov  7 02:48:18 2016
 Total Scan time:  1.930 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]