Result of FASTA (omim) for pFN21AE1456
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1456, 170 aa
  1>>>pF1KE1456 170 - 170 aa - 170 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0729+/-0.000259; mu= 14.9706+/- 0.016
 mean_var=72.3819+/-14.286, 0's: 0 Z-trim(122.0): 39  B-trim: 0 in 0/50
 Lambda= 0.150751
 statistics sampled from 39288 (39329) to 39288 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.461), width:  16
 Scan time:  5.600

The best scores are:                                      opt bits E(85289)
NP_002623 (OMIM: 601121) placenta growth factor is ( 170) 1212 271.4 4.8e-73
NP_001280572 (OMIM: 601121) placenta growth factor ( 169) 1193 267.3 8.4e-72
NP_001193941 (OMIM: 601121) placenta growth factor ( 149)  992 223.5 1.1e-58
NP_001165096 (OMIM: 192240,603933) vascular endoth ( 209)  499 116.4 2.7e-26
NP_001020538 (OMIM: 192240,603933) vascular endoth ( 389)  499 116.7 4.3e-26
NP_001191313 (OMIM: 192240,603933) vascular endoth ( 171)  491 114.6 7.7e-26
NP_001191314 (OMIM: 192240,603933) vascular endoth ( 351)  491 114.9 1.3e-25
NP_001165095 (OMIM: 192240,603933) vascular endoth ( 215)  488 114.1 1.4e-25
NP_003367 (OMIM: 192240,603933) vascular endotheli ( 395)  488 114.3 2.3e-25
NP_001165094 (OMIM: 192240,603933) vascular endoth ( 232)  479 112.1 5.9e-25
NP_001020537 (OMIM: 192240,603933) vascular endoth ( 412)  479 112.3 9.2e-25
NP_001165098 (OMIM: 192240,603933) vascular endoth ( 174)  452 106.2 2.8e-23
NP_001165100 (OMIM: 192240,603933) vascular endoth ( 191)  452 106.2   3e-23
NP_001165097 (OMIM: 192240,603933) vascular endoth ( 191)  452 106.2   3e-23
NP_001303939 (OMIM: 192240,603933) vascular endoth ( 213)  452 106.2 3.3e-23
NP_001273973 (OMIM: 192240,603933) vascular endoth ( 163)  450 105.7 3.6e-23
NP_001020540 (OMIM: 192240,603933) vascular endoth ( 354)  452 106.4 4.8e-23
NP_001020539 (OMIM: 192240,603933) vascular endoth ( 371)  452 106.4   5e-23
NP_001028928 (OMIM: 192240,603933) vascular endoth ( 371)  452 106.4   5e-23
NP_001165099 (OMIM: 192240,603933) vascular endoth ( 147)  437 102.8 2.4e-22
NP_001020541 (OMIM: 192240,603933) vascular endoth ( 327)  437 103.1 4.3e-22
NP_001165101 (OMIM: 192240,603933) vascular endoth ( 137)  410 96.9 1.3e-20
NP_001165093 (OMIM: 192240,603933) vascular endoth ( 317)  410 97.2 2.5e-20
NP_001230662 (OMIM: 601398) vascular endothelial g ( 188)  291 71.2   1e-12
NP_003368 (OMIM: 601398) vascular endothelial grow ( 207)  278 68.4 7.8e-12
NP_004460 (OMIM: 300091) vascular endothelial grow ( 354)  226 57.2   3e-08
NP_005420 (OMIM: 601528,615907) vascular endotheli ( 419)  210 53.8 3.8e-07
XP_011513721 (OMIM: 173430) PREDICTED: platelet-de ( 210)  189 49.0 5.3e-06
NP_002598 (OMIM: 173430) platelet-derived growth f ( 211)  189 49.0 5.3e-06
XP_016867778 (OMIM: 173430) PREDICTED: platelet-de ( 224)  189 49.0 5.6e-06
XP_011513718 (OMIM: 173430) PREDICTED: platelet-de ( 249)  189 49.1 6.1e-06
XP_011513717 (OMIM: 173430) PREDICTED: platelet-de ( 256)  189 49.1 6.2e-06
NP_148937 (OMIM: 190040,213600,607174,607907,61548 ( 226)  167 44.3 0.00016
NP_002599 (OMIM: 190040,213600,607174,607907,61548 ( 241)  167 44.3 0.00016
NP_148983 (OMIM: 173430) platelet-derived growth f ( 196)  153 41.2  0.0011
XP_011513720 (OMIM: 173430) PREDICTED: platelet-de ( 234)  153 41.2  0.0013
XP_011513719 (OMIM: 173430) PREDICTED: platelet-de ( 241)  153 41.2  0.0013


>>NP_002623 (OMIM: 601121) placenta growth factor isofor  (170 aa)
 initn: 1212 init1: 1212 opt: 1212  Z-score: 1432.4  bits: 271.4 E(85289): 4.8e-73
Smith-Waterman score: 1212; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:1-170)

               10        20        30        40        50        60
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
               70        80        90       100       110       120

              130       140       150       160       170
pF1KE1 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR
              130       140       150       160       170

>>NP_001280572 (OMIM: 601121) placenta growth factor iso  (169 aa)
 initn: 1044 init1: 1044 opt: 1193  Z-score: 1410.1  bits: 267.3 E(85289): 8.4e-72
Smith-Waterman score: 1193; 99.4% identity (99.4% similar) in 170 aa overlap (1-170:1-169)

               10        20        30        40        50        60
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
       ::::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::
NP_001 MPVMRLFPCFLQLLAGLALPAVPPQ-WALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
               10        20         30        40        50         

               70        80        90       100       110       120
pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
      60        70        80        90       100       110         

              130       140       150       160       170
pF1KE1 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR
     120       130       140       150       160         

>>NP_001193941 (OMIM: 601121) placenta growth factor iso  (149 aa)
 initn: 1041 init1: 992 opt: 992  Z-score: 1174.6  bits: 223.5 E(85289): 1.1e-58
Smith-Waterman score: 1003; 87.6% identity (87.6% similar) in 170 aa overlap (1-170:1-149)

               10        20        30        40        50        60
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
               70        80        90       100       110       120

              130       140       150       160       170
pF1KE1 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR
       :::::::::::::::::::::                     ::::::::
NP_001 TFSQHVRCECRPLREKMKPER---------------------CGDAVPRR
              130       140                              

>>NP_001165096 (OMIM: 192240,603933) vascular endothelia  (209 aa)
 initn: 488 init1: 456 opt: 499  Z-score: 593.1  bits: 116.4 E(85289): 2.7e-26
Smith-Waterman score: 499; 45.6% identity (74.5% similar) in 149 aa overlap (25-170:25-168)

               10        20        30        40        50        60
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
                               :   .. :.:... ::: :..:. ::::. .: :::
NP_001 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
       . .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:.  .     :.
NP_001 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
               70        80        90       100       110       120

              130       140          150       160       170       
pF1KE1 TFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR       
       .: :: .::::: ... . :..  : ::.: ::.:.:.::     ::    ::       
NP_001 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRP-----CGPCSERRKHLFVQD
              130       140       150       160            170     

NP_001 PQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR
         180       190       200         

>>NP_001020538 (OMIM: 192240,603933) vascular endothelia  (389 aa)
 initn: 473 init1: 456 opt: 499  Z-score: 589.4  bits: 116.7 E(85289): 4.3e-26
Smith-Waterman score: 499; 45.6% identity (74.5% similar) in 149 aa overlap (25-170:205-348)

                     10        20        30        40        50    
pF1KE1       MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRA
                                     :   .. :.:... ::: :..:. ::::. 
NP_001 GRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHP
          180       190       200       210       220       230    

           60        70        80        90       100       110    
pF1KE1 LERLVDVVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDR
       .: :::. .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:.  . 
NP_001 IETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQG
          240       250       260       270       280       290    

          120       130       140          150       160       170 
pF1KE1 PSYVELTFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR 
           :..: :: .::::: ... . :..  : ::.: ::.:.:.::     ::    :: 
NP_001 QHIGEMSFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRP-----CGPCSERRK
          300       310       320       330       340              

NP_001 HLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR
     350       360       370       380         

>>NP_001191313 (OMIM: 192240,603933) vascular endothelia  (171 aa)
 initn: 487 init1: 456 opt: 491  Z-score: 584.9  bits: 114.6 E(85289): 7.7e-26
Smith-Waterman score: 491; 45.0% identity (75.2% similar) in 149 aa overlap (25-170:25-171)

               10        20        30        40        50        60
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
                               :   .. :.:... ::: :..:. ::::. .: :::
NP_001 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
       . .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:.  .     :.
NP_001 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
               70        80        90       100       110       120

              130       140          150       160       170
pF1KE1 TFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR
       .: :: .::::: ... . :..  : ::.: ::.:.:.:  .  .:    :::
NP_001 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVCDK--PRR
              130       140       150       160         170 

>>NP_001191314 (OMIM: 192240,603933) vascular endothelia  (351 aa)
 initn: 456 init1: 456 opt: 491  Z-score: 580.6  bits: 114.9 E(85289): 1.3e-25
Smith-Waterman score: 491; 45.0% identity (75.2% similar) in 149 aa overlap (25-170:205-351)

                     10        20        30        40        50    
pF1KE1       MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRA
                                     :   .. :.:... ::: :..:. ::::. 
NP_001 GRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHP
          180       190       200       210       220       230    

           60        70        80        90       100       110    
pF1KE1 LERLVDVVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDR
       .: :::. .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:.  . 
NP_001 IETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQG
          240       250       260       270       280       290    

          120       130       140          150       160       170
pF1KE1 PSYVELTFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR
           :..: :: .::::: ... . :..  : ::.: ::.:.:.:  .  .:    :::
NP_001 QHIGEMSFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVCDK--PRR
          300       310       320       330       340         350 

>>NP_001165095 (OMIM: 192240,603933) vascular endothelia  (215 aa)
 initn: 471 init1: 456 opt: 488  Z-score: 580.0  bits: 114.1 E(85289): 1.4e-25
Smith-Waterman score: 488; 44.7% identity (74.7% similar) in 150 aa overlap (25-170:25-174)

               10        20        30        40        50        60
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
                               :   .. :.:... ::: :..:. ::::. .: :::
NP_001 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
       . .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:.  .     :.
NP_001 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
               70        80        90       100       110       120

              130       140          150       160        170      
pF1KE1 TFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHL-CGDAVPRR      
       .: :: .::::: ... . :..  : ::.: ::.:.:.:  .  . ::    ::      
NP_001 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVPCGPCSERRKHLFVQ
              130       140       150       160       170       180

NP_001 DPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR
              190       200       210     

>>NP_003367 (OMIM: 192240,603933) vascular endothelial g  (395 aa)
 initn: 456 init1: 456 opt: 488  Z-score: 576.4  bits: 114.3 E(85289): 2.3e-25
Smith-Waterman score: 488; 44.7% identity (74.7% similar) in 150 aa overlap (25-170:205-354)

                     10        20        30        40        50    
pF1KE1       MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRA
                                     :   .. :.:... ::: :..:. ::::. 
NP_003 GRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHP
          180       190       200       210       220       230    

           60        70        80        90       100       110    
pF1KE1 LERLVDVVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDR
       .: :::. .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:.  . 
NP_003 IETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQG
          240       250       260       270       280       290    

          120       130       140          150       160        170
pF1KE1 PSYVELTFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHL-CGDAVPRR
           :..: :: .::::: ... . :..  : ::.: ::.:.:.:  .  . ::    ::
NP_003 QHIGEMSFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVPCGPCSERR
          300       310       320       330       340       350    

NP_003 KHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR
          360       370       380       390     

>>NP_001165094 (OMIM: 192240,603933) vascular endothelia  (232 aa)
 initn: 493 init1: 456 opt: 479  Z-score: 569.0  bits: 112.1 E(85289): 5.9e-25
Smith-Waterman score: 479; 46.7% identity (78.5% similar) in 135 aa overlap (25-156:25-159)

               10        20        30        40        50        60
pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD
                               :   .. :.:... ::: :..:. ::::. .: :::
NP_001 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL
       . .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:.  .     :.
NP_001 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM
               70        80        90       100       110       120

              130       140          150       160       170       
pF1KE1 TFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR       
       .: :: .::::: ... . :..  : ::.: ::.:.:.:                     
NP_001 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVYVGARCCLMPWSLPG
              130       140       150       160       170       180

NP_001 PHPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR
              190       200       210       220       230  




170 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:50:49 2016 done: Mon Nov  7 02:50:50 2016
 Total Scan time:  5.600 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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