FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1456, 170 aa 1>>>pF1KE1456 170 - 170 aa - 170 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0729+/-0.000259; mu= 14.9706+/- 0.016 mean_var=72.3819+/-14.286, 0's: 0 Z-trim(122.0): 39 B-trim: 0 in 0/50 Lambda= 0.150751 statistics sampled from 39288 (39329) to 39288 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.816), E-opt: 0.2 (0.461), width: 16 Scan time: 5.600 The best scores are: opt bits E(85289) NP_002623 (OMIM: 601121) placenta growth factor is ( 170) 1212 271.4 4.8e-73 NP_001280572 (OMIM: 601121) placenta growth factor ( 169) 1193 267.3 8.4e-72 NP_001193941 (OMIM: 601121) placenta growth factor ( 149) 992 223.5 1.1e-58 NP_001165096 (OMIM: 192240,603933) vascular endoth ( 209) 499 116.4 2.7e-26 NP_001020538 (OMIM: 192240,603933) vascular endoth ( 389) 499 116.7 4.3e-26 NP_001191313 (OMIM: 192240,603933) vascular endoth ( 171) 491 114.6 7.7e-26 NP_001191314 (OMIM: 192240,603933) vascular endoth ( 351) 491 114.9 1.3e-25 NP_001165095 (OMIM: 192240,603933) vascular endoth ( 215) 488 114.1 1.4e-25 NP_003367 (OMIM: 192240,603933) vascular endotheli ( 395) 488 114.3 2.3e-25 NP_001165094 (OMIM: 192240,603933) vascular endoth ( 232) 479 112.1 5.9e-25 NP_001020537 (OMIM: 192240,603933) vascular endoth ( 412) 479 112.3 9.2e-25 NP_001165098 (OMIM: 192240,603933) vascular endoth ( 174) 452 106.2 2.8e-23 NP_001165100 (OMIM: 192240,603933) vascular endoth ( 191) 452 106.2 3e-23 NP_001165097 (OMIM: 192240,603933) vascular endoth ( 191) 452 106.2 3e-23 NP_001303939 (OMIM: 192240,603933) vascular endoth ( 213) 452 106.2 3.3e-23 NP_001273973 (OMIM: 192240,603933) vascular endoth ( 163) 450 105.7 3.6e-23 NP_001020540 (OMIM: 192240,603933) vascular endoth ( 354) 452 106.4 4.8e-23 NP_001020539 (OMIM: 192240,603933) vascular endoth ( 371) 452 106.4 5e-23 NP_001028928 (OMIM: 192240,603933) vascular endoth ( 371) 452 106.4 5e-23 NP_001165099 (OMIM: 192240,603933) vascular endoth ( 147) 437 102.8 2.4e-22 NP_001020541 (OMIM: 192240,603933) vascular endoth ( 327) 437 103.1 4.3e-22 NP_001165101 (OMIM: 192240,603933) vascular endoth ( 137) 410 96.9 1.3e-20 NP_001165093 (OMIM: 192240,603933) vascular endoth ( 317) 410 97.2 2.5e-20 NP_001230662 (OMIM: 601398) vascular endothelial g ( 188) 291 71.2 1e-12 NP_003368 (OMIM: 601398) vascular endothelial grow ( 207) 278 68.4 7.8e-12 NP_004460 (OMIM: 300091) vascular endothelial grow ( 354) 226 57.2 3e-08 NP_005420 (OMIM: 601528,615907) vascular endotheli ( 419) 210 53.8 3.8e-07 XP_011513721 (OMIM: 173430) PREDICTED: platelet-de ( 210) 189 49.0 5.3e-06 NP_002598 (OMIM: 173430) platelet-derived growth f ( 211) 189 49.0 5.3e-06 XP_016867778 (OMIM: 173430) PREDICTED: platelet-de ( 224) 189 49.0 5.6e-06 XP_011513718 (OMIM: 173430) PREDICTED: platelet-de ( 249) 189 49.1 6.1e-06 XP_011513717 (OMIM: 173430) PREDICTED: platelet-de ( 256) 189 49.1 6.2e-06 NP_148937 (OMIM: 190040,213600,607174,607907,61548 ( 226) 167 44.3 0.00016 NP_002599 (OMIM: 190040,213600,607174,607907,61548 ( 241) 167 44.3 0.00016 NP_148983 (OMIM: 173430) platelet-derived growth f ( 196) 153 41.2 0.0011 XP_011513720 (OMIM: 173430) PREDICTED: platelet-de ( 234) 153 41.2 0.0013 XP_011513719 (OMIM: 173430) PREDICTED: platelet-de ( 241) 153 41.2 0.0013 >>NP_002623 (OMIM: 601121) placenta growth factor isofor (170 aa) initn: 1212 init1: 1212 opt: 1212 Z-score: 1432.4 bits: 271.4 E(85289): 4.8e-73 Smith-Waterman score: 1212; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:1-170) 10 20 30 40 50 60 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR :::::::::::::::::::::::::::::::::::::::::::::::::: NP_002 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR 130 140 150 160 170 >>NP_001280572 (OMIM: 601121) placenta growth factor iso (169 aa) initn: 1044 init1: 1044 opt: 1193 Z-score: 1410.1 bits: 267.3 E(85289): 8.4e-72 Smith-Waterman score: 1193; 99.4% identity (99.4% similar) in 170 aa overlap (1-170:1-169) 10 20 30 40 50 60 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD ::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: NP_001 MPVMRLFPCFLQLLAGLALPAVPPQ-WALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL 60 70 80 90 100 110 130 140 150 160 170 pF1KE1 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR :::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR 120 130 140 150 160 >>NP_001193941 (OMIM: 601121) placenta growth factor iso (149 aa) initn: 1041 init1: 992 opt: 992 Z-score: 1174.6 bits: 223.5 E(85289): 1.1e-58 Smith-Waterman score: 1003; 87.6% identity (87.6% similar) in 170 aa overlap (1-170:1-149) 10 20 30 40 50 60 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR ::::::::::::::::::::: :::::::: NP_001 TFSQHVRCECRPLREKMKPER---------------------CGDAVPRR 130 140 >>NP_001165096 (OMIM: 192240,603933) vascular endothelia (209 aa) initn: 488 init1: 456 opt: 499 Z-score: 593.1 bits: 116.4 E(85289): 2.7e-26 Smith-Waterman score: 499; 45.6% identity (74.5% similar) in 149 aa overlap (25-170:25-168) 10 20 30 40 50 60 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD : .. :.:... ::: :..:. ::::. .: ::: NP_001 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL . .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . :. NP_001 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR .: :: .::::: ... . :.. : ::.: ::.:.:.:: :: :: NP_001 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRP-----CGPCSERRKHLFVQD 130 140 150 160 170 NP_001 PQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR 180 190 200 >>NP_001020538 (OMIM: 192240,603933) vascular endothelia (389 aa) initn: 473 init1: 456 opt: 499 Z-score: 589.4 bits: 116.7 E(85289): 4.3e-26 Smith-Waterman score: 499; 45.6% identity (74.5% similar) in 149 aa overlap (25-170:205-348) 10 20 30 40 50 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRA : .. :.:... ::: :..:. ::::. NP_001 GRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHP 180 190 200 210 220 230 60 70 80 90 100 110 pF1KE1 LERLVDVVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDR .: :::. .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . NP_001 IETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQG 240 250 260 270 280 290 120 130 140 150 160 170 pF1KE1 PSYVELTFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR :..: :: .::::: ... . :.. : ::.: ::.:.:.:: :: :: NP_001 QHIGEMSFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRP-----CGPCSERRK 300 310 320 330 340 NP_001 HLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR 350 360 370 380 >>NP_001191313 (OMIM: 192240,603933) vascular endothelia (171 aa) initn: 487 init1: 456 opt: 491 Z-score: 584.9 bits: 114.6 E(85289): 7.7e-26 Smith-Waterman score: 491; 45.0% identity (75.2% similar) in 149 aa overlap (25-170:25-171) 10 20 30 40 50 60 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD : .. :.:... ::: :..:. ::::. .: ::: NP_001 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL . .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . :. NP_001 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR .: :: .::::: ... . :.. : ::.: ::.:.:.: . .: ::: NP_001 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVCDK--PRR 130 140 150 160 170 >>NP_001191314 (OMIM: 192240,603933) vascular endothelia (351 aa) initn: 456 init1: 456 opt: 491 Z-score: 580.6 bits: 114.9 E(85289): 1.3e-25 Smith-Waterman score: 491; 45.0% identity (75.2% similar) in 149 aa overlap (25-170:205-351) 10 20 30 40 50 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRA : .. :.:... ::: :..:. ::::. NP_001 GRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHP 180 190 200 210 220 230 60 70 80 90 100 110 pF1KE1 LERLVDVVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDR .: :::. .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . NP_001 IETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQG 240 250 260 270 280 290 120 130 140 150 160 170 pF1KE1 PSYVELTFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR :..: :: .::::: ... . :.. : ::.: ::.:.:.: . .: ::: NP_001 QHIGEMSFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVCDK--PRR 300 310 320 330 340 350 >>NP_001165095 (OMIM: 192240,603933) vascular endothelia (215 aa) initn: 471 init1: 456 opt: 488 Z-score: 580.0 bits: 114.1 E(85289): 1.4e-25 Smith-Waterman score: 488; 44.7% identity (74.7% similar) in 150 aa overlap (25-170:25-174) 10 20 30 40 50 60 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD : .. :.:... ::: :..:. ::::. .: ::: NP_001 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL . .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . :. NP_001 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHL-CGDAVPRR .: :: .::::: ... . :.. : ::.: ::.:.:.: . . :: :: NP_001 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVPCGPCSERRKHLFVQ 130 140 150 160 170 180 NP_001 DPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR 190 200 210 >>NP_003367 (OMIM: 192240,603933) vascular endothelial g (395 aa) initn: 456 init1: 456 opt: 488 Z-score: 576.4 bits: 114.3 E(85289): 2.3e-25 Smith-Waterman score: 488; 44.7% identity (74.7% similar) in 150 aa overlap (25-170:205-354) 10 20 30 40 50 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRA : .. :.:... ::: :..:. ::::. NP_003 GRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHP 180 190 200 210 220 230 60 70 80 90 100 110 pF1KE1 LERLVDVVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDR .: :::. .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . NP_003 IETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQG 240 250 260 270 280 290 120 130 140 150 160 170 pF1KE1 PSYVELTFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHL-CGDAVPRR :..: :: .::::: ... . :.. : ::.: ::.:.:.: . . :: :: NP_003 QHIGEMSFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVPCGPCSERR 300 310 320 330 340 350 NP_003 KHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR 360 370 380 390 >>NP_001165094 (OMIM: 192240,603933) vascular endothelia (232 aa) initn: 493 init1: 456 opt: 479 Z-score: 569.0 bits: 112.1 E(85289): 5.9e-25 Smith-Waterman score: 479; 46.7% identity (78.5% similar) in 135 aa overlap (25-156:25-159) 10 20 30 40 50 60 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD : .. :.:... ::: :..:. ::::. .: ::: NP_001 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL . .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . :. NP_001 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR .: :: .::::: ... . :.. : ::.: ::.:.:.: NP_001 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVYVGARCCLMPWSLPG 130 140 150 160 170 180 NP_001 PHPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR 190 200 210 220 230 170 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:50:49 2016 done: Mon Nov 7 02:50:50 2016 Total Scan time: 5.600 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]