FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1456, 170 aa 1>>>pF1KE1456 170 - 170 aa - 170 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3315+/-0.000539; mu= 13.6494+/- 0.033 mean_var=74.8083+/-14.779, 0's: 0 Z-trim(115.0): 29 B-trim: 0 in 0/51 Lambda= 0.148286 statistics sampled from 15540 (15569) to 15540 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.827), E-opt: 0.2 (0.478), width: 16 Scan time: 2.100 The best scores are: opt bits E(32554) CCDS9835.1 PGF gene_id:5228|Hs108|chr14 ( 170) 1212 267.2 3.4e-72 CCDS73664.1 PGF gene_id:5228|Hs108|chr14 ( 169) 1193 263.2 5.7e-71 CCDS55932.1 PGF gene_id:5228|Hs108|chr14 ( 149) 992 220.1 4.5e-58 CCDS55008.1 VEGFA gene_id:7422|Hs108|chr6 ( 209) 499 114.8 3.3e-26 CCDS47433.1 VEGFA gene_id:7422|Hs108|chr6 ( 389) 499 114.9 5.4e-26 CCDS55009.1 VEGFA gene_id:7422|Hs108|chr6 ( 215) 488 112.4 1.7e-25 CCDS4907.2 VEGFA gene_id:7422|Hs108|chr6 ( 395) 488 112.6 2.8e-25 CCDS55010.1 VEGFA gene_id:7422|Hs108|chr6 ( 232) 479 110.5 7e-25 CCDS34457.1 VEGFA gene_id:7422|Hs108|chr6 ( 412) 479 110.7 1.1e-24 CCDS55011.1 VEGFA gene_id:7422|Hs108|chr6 ( 174) 452 104.6 3e-23 CCDS55013.1 VEGFA gene_id:7422|Hs108|chr6 ( 191) 452 104.7 3.3e-23 CCDS55012.1 VEGFA gene_id:7422|Hs108|chr6 ( 191) 452 104.7 3.3e-23 CCDS69125.1 VEGFA gene_id:7422|Hs108|chr6 ( 163) 450 104.2 3.9e-23 CCDS47435.1 VEGFA gene_id:7422|Hs108|chr6 ( 354) 452 104.9 5.3e-23 CCDS34458.1 VEGFA gene_id:7422|Hs108|chr6 ( 371) 452 104.9 5.5e-23 CCDS47432.1 VEGFA gene_id:7422|Hs108|chr6 ( 371) 452 104.9 5.5e-23 CCDS55014.1 VEGFA gene_id:7422|Hs108|chr6 ( 147) 437 101.4 2.5e-22 CCDS47434.1 VEGFA gene_id:7422|Hs108|chr6 ( 327) 437 101.6 4.6e-22 CCDS55015.1 VEGFA gene_id:7422|Hs108|chr6 ( 137) 410 95.6 1.3e-20 CCDS55007.1 VEGFA gene_id:7422|Hs108|chr6 ( 317) 410 95.8 2.5e-20 CCDS58144.1 VEGFB gene_id:7423|Hs108|chr11 ( 188) 291 70.2 7.6e-13 CCDS8062.1 VEGFB gene_id:7423|Hs108|chr11 ( 207) 278 67.5 5.6e-12 >>CCDS9835.1 PGF gene_id:5228|Hs108|chr14 (170 aa) initn: 1212 init1: 1212 opt: 1212 Z-score: 1409.6 bits: 267.2 E(32554): 3.4e-72 Smith-Waterman score: 1212; 100.0% identity (100.0% similar) in 170 aa overlap (1-170:1-170) 10 20 30 40 50 60 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS98 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS98 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS98 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR 130 140 150 160 170 >>CCDS73664.1 PGF gene_id:5228|Hs108|chr14 (169 aa) initn: 1044 init1: 1044 opt: 1193 Z-score: 1387.7 bits: 263.2 E(32554): 5.7e-71 Smith-Waterman score: 1193; 99.4% identity (99.4% similar) in 170 aa overlap (1-170:1-169) 10 20 30 40 50 60 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD ::::::::::::::::::::::::: :::::::::::::::::::::::::::::::::: CCDS73 MPVMRLFPCFLQLLAGLALPAVPPQ-WALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD 10 20 30 40 50 70 80 90 100 110 120 pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL 60 70 80 90 100 110 130 140 150 160 170 pF1KE1 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS73 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR 120 130 140 150 160 >>CCDS55932.1 PGF gene_id:5228|Hs108|chr14 (149 aa) initn: 1041 init1: 992 opt: 992 Z-score: 1156.1 bits: 220.1 E(32554): 4.5e-58 Smith-Waterman score: 1003; 87.6% identity (87.6% similar) in 170 aa overlap (1-170:1-149) 10 20 30 40 50 60 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS55 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREKQRPTDCHLCGDAVPRR ::::::::::::::::::::: :::::::: CCDS55 TFSQHVRCECRPLREKMKPER---------------------CGDAVPRR 130 140 >>CCDS55008.1 VEGFA gene_id:7422|Hs108|chr6 (209 aa) initn: 488 init1: 456 opt: 499 Z-score: 584.0 bits: 114.8 E(32554): 3.3e-26 Smith-Waterman score: 499; 45.6% identity (74.5% similar) in 149 aa overlap (25-170:25-168) 10 20 30 40 50 60 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD : .. :.:... ::: :..:. ::::. .: ::: CCDS55 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL . .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . :. CCDS55 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR .: :: .::::: ... . :.. : ::.: ::.:.:.:: :: :: CCDS55 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRP-----CGPCSERRKHLFVQD 130 140 150 160 170 CCDS55 PQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR 180 190 200 >>CCDS47433.1 VEGFA gene_id:7422|Hs108|chr6 (389 aa) initn: 473 init1: 456 opt: 499 Z-score: 580.1 bits: 114.9 E(32554): 5.4e-26 Smith-Waterman score: 499; 45.6% identity (74.5% similar) in 149 aa overlap (25-170:205-348) 10 20 30 40 50 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRA : .. :.:... ::: :..:. ::::. CCDS47 GRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHP 180 190 200 210 220 230 60 70 80 90 100 110 pF1KE1 LERLVDVVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDR .: :::. .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . CCDS47 IETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQG 240 250 260 270 280 290 120 130 140 150 160 170 pF1KE1 PSYVELTFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR :..: :: .::::: ... . :.. : ::.: ::.:.:.:: :: :: CCDS47 QHIGEMSFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRP-----CGPCSERRK 300 310 320 330 340 CCDS47 HLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR 350 360 370 380 >>CCDS55009.1 VEGFA gene_id:7422|Hs108|chr6 (215 aa) initn: 471 init1: 456 opt: 488 Z-score: 571.1 bits: 112.4 E(32554): 1.7e-25 Smith-Waterman score: 488; 44.7% identity (74.7% similar) in 150 aa overlap (25-170:25-174) 10 20 30 40 50 60 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD : .. :.:... ::: :..:. ::::. .: ::: CCDS55 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL . .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . :. CCDS55 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHL-CGDAVPRR .: :: .::::: ... . :.. : ::.: ::.:.:.: . . :: :: CCDS55 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVPCGPCSERRKHLFVQ 130 140 150 160 170 180 CCDS55 DPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR 190 200 210 >>CCDS4907.2 VEGFA gene_id:7422|Hs108|chr6 (395 aa) initn: 456 init1: 456 opt: 488 Z-score: 567.3 bits: 112.6 E(32554): 2.8e-25 Smith-Waterman score: 488; 44.7% identity (74.7% similar) in 150 aa overlap (25-170:205-354) 10 20 30 40 50 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRA : .. :.:... ::: :..:. ::::. CCDS49 GRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHP 180 190 200 210 220 230 60 70 80 90 100 110 pF1KE1 LERLVDVVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDR .: :::. .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . CCDS49 IETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQG 240 250 260 270 280 290 120 130 140 150 160 170 pF1KE1 PSYVELTFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHL-CGDAVPRR :..: :: .::::: ... . :.. : ::.: ::.:.:.: . . :: :: CCDS49 QHIGEMSFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVPCGPCSERR 300 310 320 330 340 350 CCDS49 KHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR 360 370 380 390 >>CCDS55010.1 VEGFA gene_id:7422|Hs108|chr6 (232 aa) initn: 493 init1: 456 opt: 479 Z-score: 560.2 bits: 110.5 E(32554): 7e-25 Smith-Waterman score: 479; 46.7% identity (78.5% similar) in 135 aa overlap (25-156:25-159) 10 20 30 40 50 60 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD : .. :.:... ::: :..:. ::::. .: ::: CCDS55 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL . .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . :. CCDS55 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR .: :: .::::: ... . :.. : ::.: ::.:.:.: CCDS55 SFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVYVGARCCLMPWSLPG 130 140 150 160 170 180 CCDS55 PHPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR 190 200 210 220 230 >>CCDS34457.1 VEGFA gene_id:7422|Hs108|chr6 (412 aa) initn: 478 init1: 456 opt: 479 Z-score: 556.7 bits: 110.7 E(32554): 1.1e-24 Smith-Waterman score: 479; 46.7% identity (78.5% similar) in 135 aa overlap (25-156:205-339) 10 20 30 40 50 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRA : .. :.:... ::: :..:. ::::. CCDS34 GRASETMNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHP 180 190 200 210 220 230 60 70 80 90 100 110 pF1KE1 LERLVDVVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDR .: :::. .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . CCDS34 IETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQG 240 250 260 270 280 290 120 130 140 150 160 170 pF1KE1 PSYVELTFSQHVRCECRPLREKMKPERR--RPKGRG-KRRREKQRPTDCHLCGDAVPRR :..: :: .::::: ... . :.. : ::.: ::.:.:.: CCDS34 QHIGEMSFLQHNKCECRPKKDRARQEKKSVRGKGKGQKRKRKKSRYKSWSVYVGARCCLM 300 310 320 330 340 350 CCDS34 PWSLPGPHPCGPCSERRKHLFVQDPQTCKCSCKNTDSRCKARQLELNERTCRCDKPRR 360 370 380 390 400 410 >>CCDS55011.1 VEGFA gene_id:7422|Hs108|chr6 (174 aa) initn: 445 init1: 414 opt: 452 Z-score: 530.8 bits: 104.6 E(32554): 3e-23 Smith-Waterman score: 452; 43.7% identity (73.2% similar) in 142 aa overlap (25-163:25-163) 10 20 30 40 50 60 pF1KE1 MPVMRLFPCFLQLLAGLALPAVPPQQWALSAGNGSSEVEVVPFQEVWGRSYCRALERLVD : .. :.:... ::: :..:. ::::. .: ::: CCDS55 MNFLLSWVHWSLALLLYLHHAKWSQAAPMAEGGGQNHHEVVKFMDVYQRSYCHPIETLVD 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 VVSEYPSEVEHMFSPSCVSLLRCTGCCGDENLHCVPVETANVTMQLLKIRSGDRPSYVEL . .:::.:.:..:.:::: :.:: :::.::.:.:::.: .:.:::...:. . :. CCDS55 IFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEM 70 80 90 100 110 120 130 140 150 160 170 pF1KE1 TFSQHVRCECRPLREKMKPERRRPKGRGKRRREK---QRPTDCHLCGDAVPRR .: :: .::::: ... . : : : ..::.. : : :. : CCDS55 SFLQHNKCECRPKKDRARQE--NPCGPCSERRKHLFVQDPQTCK-CSCKNTDSRCKM 130 140 150 160 170 170 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:50:48 2016 done: Mon Nov 7 02:50:49 2016 Total Scan time: 2.100 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]