Result of FASTA (omim) for pFN21AE4440
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4440, 457 aa
  1>>>pF1KE4440 457 - 457 aa - 457 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.7272+/-0.000382; mu= -6.6237+/- 0.024
 mean_var=310.9435+/-61.020, 0's: 0 Z-trim(122.7): 12  B-trim: 0 in 0/57
 Lambda= 0.072733
 statistics sampled from 41353 (41374) to 41353 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.485), width:  16
 Scan time: 12.370

The best scores are:                                      opt bits E(85289)
NP_001266 (OMIM: 118910) chromogranin-A isoform 1  ( 457) 2994 327.5 4.6e-89
XP_011534672 (OMIM: 118910) PREDICTED: chromograni ( 457) 2994 327.5 4.6e-89
NP_001288619 (OMIM: 118910) chromogranin-A isoform ( 306) 1237 143.0 1.1e-33
NP_001030025 (OMIM: 300029,300455,300834,304020,31 (1152)  322 47.4 0.00024


>>NP_001266 (OMIM: 118910) chromogranin-A isoform 1 prep  (457 aa)
 initn: 2994 init1: 2994 opt: 2994  Z-score: 1720.0  bits: 327.5 E(85289): 4.6e-89
Smith-Waterman score: 2994; 100.0% identity (100.0% similar) in 457 aa overlap (1-457:1-457)

               10        20        30        40        50        60
pF1KE4 MRSAAVLALLLCAGQVTALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRSAAVLALLLCAGQVTALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSGFEDELSEVLENQSSQAELKEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSGFEDELSEVLENQSSQAELKEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 VEEPSSKDVMEKREDSKEAEKSGEATDGARPQALPEPMQESKAEGNNQAPGEEEEEEEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VEEPSSKDVMEKREDSKEAEKSGEATDGARPQALPEPMQESKAEGNNQAPGEEEEEEEEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 TNTHPPASLPSQKYPGPQAEGDSEGLSQGLVDREKGLSAEPGWQAKREEEEEEEEEAEAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TNTHPPASLPSQKYPGPQAEGDSEGLSQGLVDREKGLSAEPGWQAKREEEEEEEEEAEAG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 EEAVPEEEGPTVVLNPHPSLGYKEIRKGESRSEALAVDGAGKPGAEEAQDPEGKGEQEHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEAVPEEEGPTVVLNPHPSLGYKEIRKGESRSEALAVDGAGKPGAEEAQDPEGKGEQEHS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 QQKEEEEEMAVVPQGLFRGGKSGELEQEEERLSKEWEDSKRWSKMDQLAKELTAEKRLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQKEEEEEMAVVPQGLFRGGKSGELEQEEERLSKEWEDSKRWSKMDQLAKELTAEKRLEG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 QEEEEDNRDSSMKLSFRARAYGFRGPGPQLRRGWRPSSREDSLEAGLPLQVRGYPEEKKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEEEEDNRDSSMKLSFRARAYGFRGPGPQLRRGWRPSSREDSLEAGLPLQVRGYPEEKKE
              370       380       390       400       410       420

              430       440       450       
pF1KE4 EEGSANRRPEDQELESLSAIEAELEKVAHQLQALRRG
       :::::::::::::::::::::::::::::::::::::
NP_001 EEGSANRRPEDQELESLSAIEAELEKVAHQLQALRRG
              430       440       450       

>>XP_011534672 (OMIM: 118910) PREDICTED: chromogranin-A   (457 aa)
 initn: 2994 init1: 2994 opt: 2994  Z-score: 1720.0  bits: 327.5 E(85289): 4.6e-89
Smith-Waterman score: 2994; 100.0% identity (100.0% similar) in 457 aa overlap (1-457:1-457)

               10        20        30        40        50        60
pF1KE4 MRSAAVLALLLCAGQVTALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MRSAAVLALLLCAGQVTALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSGFEDELSEVLENQSSQAELKEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSGFEDELSEVLENQSSQAELKEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 VEEPSSKDVMEKREDSKEAEKSGEATDGARPQALPEPMQESKAEGNNQAPGEEEEEEEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VEEPSSKDVMEKREDSKEAEKSGEATDGARPQALPEPMQESKAEGNNQAPGEEEEEEEEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 TNTHPPASLPSQKYPGPQAEGDSEGLSQGLVDREKGLSAEPGWQAKREEEEEEEEEAEAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TNTHPPASLPSQKYPGPQAEGDSEGLSQGLVDREKGLSAEPGWQAKREEEEEEEEEAEAG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 EEAVPEEEGPTVVLNPHPSLGYKEIRKGESRSEALAVDGAGKPGAEEAQDPEGKGEQEHS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEAVPEEEGPTVVLNPHPSLGYKEIRKGESRSEALAVDGAGKPGAEEAQDPEGKGEQEHS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 QQKEEEEEMAVVPQGLFRGGKSGELEQEEERLSKEWEDSKRWSKMDQLAKELTAEKRLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQKEEEEEMAVVPQGLFRGGKSGELEQEEERLSKEWEDSKRWSKMDQLAKELTAEKRLEG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 QEEEEDNRDSSMKLSFRARAYGFRGPGPQLRRGWRPSSREDSLEAGLPLQVRGYPEEKKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QEEEEDNRDSSMKLSFRARAYGFRGPGPQLRRGWRPSSREDSLEAGLPLQVRGYPEEKKE
              370       380       390       400       410       420

              430       440       450       
pF1KE4 EEGSANRRPEDQELESLSAIEAELEKVAHQLQALRRG
       :::::::::::::::::::::::::::::::::::::
XP_011 EEGSANRRPEDQELESLSAIEAELEKVAHQLQALRRG
              430       440       450       

>>NP_001288619 (OMIM: 118910) chromogranin-A isoform 2 p  (306 aa)
 initn: 1237 init1: 1237 opt: 1237  Z-score: 726.1  bits: 143.0 E(85289): 1.1e-33
Smith-Waterman score: 1678; 66.7% identity (67.0% similar) in 457 aa overlap (1-457:1-306)

               10        20        30        40        50        60
pF1KE4 MRSAAVLALLLCAGQVTALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRSAAVLALLLCAGQVTALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 RGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSGFEDELSEVLENQSSQAELKEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::  
NP_001 RGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSGFEDELSEVLENQSSQAELK--
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KE4 VEEPSSKDVMEKREDSKEAEKSGEATDGARPQALPEPMQESKAEGNNQAPGEEEEEEEEA
                                                                   
NP_001 ------------------------------------------------------------
                                                                   

              190       200       210       220       230       240
pF1KE4 TNTHPPASLPSQKYPGPQAEGDSEGLSQGLVDREKGLSAEPGWQAKREEEEEEEEEAEAG
                                                                   
NP_001 ------------------------------------------------------------
                                                                   

              250       260       270       280       290       300
pF1KE4 EEAVPEEEGPTVVLNPHPSLGYKEIRKGESRSEALAVDGAGKPGAEEAQDPEGKGEQEHS
                                    .::::::::::::::::::::::::::::::
NP_001 -----------------------------GRSEALAVDGAGKPGAEEAQDPEGKGEQEHS
                                   120       130       140         

              310       320       330       340       350       360
pF1KE4 QQKEEEEEMAVVPQGLFRGGKSGELEQEEERLSKEWEDSKRWSKMDQLAKELTAEKRLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QQKEEEEEMAVVPQGLFRGGKSGELEQEEERLSKEWEDSKRWSKMDQLAKELTAEKRLEG
     150       160       170       180       190       200         

              370       380       390       400       410       420
pF1KE4 QEEEEDNRDSSMKLSFRARAYGFRGPGPQLRRGWRPSSREDSLEAGLPLQVRGYPEEKKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEEEEDNRDSSMKLSFRARAYGFRGPGPQLRRGWRPSSREDSLEAGLPLQVRGYPEEKKE
     210       220       230       240       250       260         

              430       440       450       
pF1KE4 EEGSANRRPEDQELESLSAIEAELEKVAHQLQALRRG
       :::::::::::::::::::::::::::::::::::::
NP_001 EEGSANRRPEDQELESLSAIEAELEKVAHQLQALRRG
     270       280       290       300      

>>NP_001030025 (OMIM: 300029,300455,300834,304020,312610  (1152 aa)
 initn: 296 init1: 175 opt: 322  Z-score: 199.1  bits: 47.4 E(85289): 0.00024
Smith-Waterman score: 322; 27.4% identity (55.1% similar) in 405 aa overlap (71-450:715-1101)

               50        60        70         80        90         
pF1KE4 SDTLSKPSPMPVSQECFETLRGDERILSILRHQNLLKEL-QDLALQGAKERAHQQKKHSG
                                     :.:.  ::  :..   : .:... ..... 
NP_001 EMERPGEGEKELAEKEEWKKRDGEEQEQKEREQGHQKERNQEMEEGGEEEHGEGEEEEGD
          690       700       710       720       730       740    

     100       110       120       130        140         150      
pF1KE4 FEDELSEVLENQSSQAELKEAVEEPSSKDVME-KREDSKEAEKSGE--ATDGARPQALPE
        :.:  :  :.....    : ::    :.  : :.:.    :..::  . .:   .   :
NP_001 REEE--EEKEGEGKEEGEGEEVEGEREKEEGERKKEERAGKEEKGEEEGDQGEGEEEETE
            750       760       770       780       790       800  

        160              170       180       190       200         
pF1KE4 PMQESKAEGNN-------QAPGEEEEEEEEATNTHPPASLPSQKYPGPQAEGDSEGLSQG
          : : ::..       .. ::.::::::. . .  .    ..  : . ::...:  .:
NP_001 GRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKGEEEG
            810       820       830       840       850       860  

     210       220       230         240       250       260       
pF1KE4 LVDREKGLSAEPGWQAKREEEEEEEEEA--EAGEEAVPEEEGPTVVLNPHPSLGYKEIRK
           :.: . : : ... : :::: :    : ::    ::::     . . . :  : ..
NP_001 ----EEGEGEEEGEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGE--GEEEGEGEGEEEE
                870       880       890       900         910      

       270       280           290       300       310       320   
pF1KE4 GESRSEALAVDGAGK----PGAEEAQDPEGKGEQEHSQQKEEEEEMAVVPQGLFRGGKSG
       ::...:  . .: :.     :  :..: ::.::.:... . ::::      :  .: . :
NP_001 GEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEEEEGEWEGEEEE------GEGEGEEEG
        920       930       940       950       960             970

           330       340       350       360       370       380   
pF1KE4 ELEQEEERLSKEWEDSKRWSKMDQLAKELTAEKRLEGQEEEEDNRDSSMKLSFRARAYGF
       : : :: .   : :...  .. ..  .:  .:.. ::.:: : . .   .   .... : 
NP_001 EGEGEEGEGEGEEEEGEGEGEEEEGEEE--GEEEGEGEEEGEGEGEEEEEGEVEGEVEGE
              980       990        1000      1010      1020        

            390       400       410       420              430     
pF1KE4 RGPGP-QLRRGWRPSSREDSLEAGLPLQVRGYPEEKKEEEGS-------ANRRPEDQELE
       .: :  . ..: . .  :.  . :   . :   ::..::::.        :.: . .: .
NP_001 EGEGEGEEEEGEEEG--EEREKEGEGEENRRNREEEEEEEGKYQETGEEENERQDGEEYK
     1030      1040        1050      1060      1070      1080      

         440       450                                             
pF1KE4 SLSAIEAELEKVAHQLQALRRG                                      
       ..: :.. ..   :.                                             
NP_001 KVSKIKGSVKYGKHKTYQKKSVTNTQGNGKEQRSKMPVQSKRLLKNGPSGSKKFWNNVLP
       1090      1100      1110      1120      1130      1140      




457 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:37:53 2016 done: Sun Nov  6 00:37:55 2016
 Total Scan time: 12.370 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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