FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE4440, 457 aa 1>>>pF1KE4440 457 - 457 aa - 457 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.1828+/-0.000914; mu= -3.0495+/- 0.055 mean_var=286.9821+/-57.036, 0's: 0 Z-trim(114.9): 18 B-trim: 0 in 0/54 Lambda= 0.075709 statistics sampled from 15480 (15491) to 15480 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.777), E-opt: 0.2 (0.476), width: 16 Scan time: 3.920 The best scores are: opt bits E(32554) CCDS9906.1 CHGA gene_id:1113|Hs108|chr14 ( 457) 2994 340.1 2.8e-93 CCDS76718.1 CHGA gene_id:1113|Hs108|chr14 ( 306) 1237 148.1 1.2e-35 >>CCDS9906.1 CHGA gene_id:1113|Hs108|chr14 (457 aa) initn: 2994 init1: 2994 opt: 2994 Z-score: 1788.1 bits: 340.1 E(32554): 2.8e-93 Smith-Waterman score: 2994; 100.0% identity (100.0% similar) in 457 aa overlap (1-457:1-457) 10 20 30 40 50 60 pF1KE4 MRSAAVLALLLCAGQVTALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 MRSAAVLALLLCAGQVTALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSGFEDELSEVLENQSSQAELKEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 RGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSGFEDELSEVLENQSSQAELKEA 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE4 VEEPSSKDVMEKREDSKEAEKSGEATDGARPQALPEPMQESKAEGNNQAPGEEEEEEEEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 VEEPSSKDVMEKREDSKEAEKSGEATDGARPQALPEPMQESKAEGNNQAPGEEEEEEEEA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE4 TNTHPPASLPSQKYPGPQAEGDSEGLSQGLVDREKGLSAEPGWQAKREEEEEEEEEAEAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 TNTHPPASLPSQKYPGPQAEGDSEGLSQGLVDREKGLSAEPGWQAKREEEEEEEEEAEAG 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE4 EEAVPEEEGPTVVLNPHPSLGYKEIRKGESRSEALAVDGAGKPGAEEAQDPEGKGEQEHS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 EEAVPEEEGPTVVLNPHPSLGYKEIRKGESRSEALAVDGAGKPGAEEAQDPEGKGEQEHS 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE4 QQKEEEEEMAVVPQGLFRGGKSGELEQEEERLSKEWEDSKRWSKMDQLAKELTAEKRLEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 QQKEEEEEMAVVPQGLFRGGKSGELEQEEERLSKEWEDSKRWSKMDQLAKELTAEKRLEG 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE4 QEEEEDNRDSSMKLSFRARAYGFRGPGPQLRRGWRPSSREDSLEAGLPLQVRGYPEEKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS99 QEEEEDNRDSSMKLSFRARAYGFRGPGPQLRRGWRPSSREDSLEAGLPLQVRGYPEEKKE 370 380 390 400 410 420 430 440 450 pF1KE4 EEGSANRRPEDQELESLSAIEAELEKVAHQLQALRRG ::::::::::::::::::::::::::::::::::::: CCDS99 EEGSANRRPEDQELESLSAIEAELEKVAHQLQALRRG 430 440 450 >>CCDS76718.1 CHGA gene_id:1113|Hs108|chr14 (306 aa) initn: 1237 init1: 1237 opt: 1237 Z-score: 753.4 bits: 148.1 E(32554): 1.2e-35 Smith-Waterman score: 1678; 66.7% identity (67.0% similar) in 457 aa overlap (1-457:1-306) 10 20 30 40 50 60 pF1KE4 MRSAAVLALLLCAGQVTALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 MRSAAVLALLLCAGQVTALPVNSPMNKGDTEVMKCIVEVISDTLSKPSPMPVSQECFETL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE4 RGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSGFEDELSEVLENQSSQAELKEA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 RGDERILSILRHQNLLKELQDLALQGAKERAHQQKKHSGFEDELSEVLENQSSQAELK-- 70 80 90 100 110 130 140 150 160 170 180 pF1KE4 VEEPSSKDVMEKREDSKEAEKSGEATDGARPQALPEPMQESKAEGNNQAPGEEEEEEEEA CCDS76 ------------------------------------------------------------ 190 200 210 220 230 240 pF1KE4 TNTHPPASLPSQKYPGPQAEGDSEGLSQGLVDREKGLSAEPGWQAKREEEEEEEEEAEAG CCDS76 ------------------------------------------------------------ 250 260 270 280 290 300 pF1KE4 EEAVPEEEGPTVVLNPHPSLGYKEIRKGESRSEALAVDGAGKPGAEEAQDPEGKGEQEHS .:::::::::::::::::::::::::::::: CCDS76 -----------------------------GRSEALAVDGAGKPGAEEAQDPEGKGEQEHS 120 130 140 310 320 330 340 350 360 pF1KE4 QQKEEEEEMAVVPQGLFRGGKSGELEQEEERLSKEWEDSKRWSKMDQLAKELTAEKRLEG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 QQKEEEEEMAVVPQGLFRGGKSGELEQEEERLSKEWEDSKRWSKMDQLAKELTAEKRLEG 150 160 170 180 190 200 370 380 390 400 410 420 pF1KE4 QEEEEDNRDSSMKLSFRARAYGFRGPGPQLRRGWRPSSREDSLEAGLPLQVRGYPEEKKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS76 QEEEEDNRDSSMKLSFRARAYGFRGPGPQLRRGWRPSSREDSLEAGLPLQVRGYPEEKKE 210 220 230 240 250 260 430 440 450 pF1KE4 EEGSANRRPEDQELESLSAIEAELEKVAHQLQALRRG ::::::::::::::::::::::::::::::::::::: CCDS76 EEGSANRRPEDQELESLSAIEAELEKVAHQLQALRRG 270 280 290 300 457 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 00:37:52 2016 done: Sun Nov 6 00:37:53 2016 Total Scan time: 3.920 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]