FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8900, 233 aa 1>>>pF1KB8900 233 - 233 aa - 233 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.5299+/-0.000276; mu= 7.7820+/- 0.017 mean_var=203.4235+/-41.715, 0's: 0 Z-trim(125.4): 78 B-trim: 916 in 1/58 Lambda= 0.089924 statistics sampled from 48855 (48994) to 48855 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.856), E-opt: 0.2 (0.574), width: 16 Scan time: 8.170 The best scores are: opt bits E(85289) NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapi ( 233) 1644 224.3 1.4e-58 NP_005625 (OMIM: 300123,312000,313430) transcripti ( 446) 508 77.2 5e-14 NP_003097 (OMIM: 184429,189960,206900) transcripti ( 317) 499 75.9 8.9e-14 NP_005977 (OMIM: 602148) transcription factor SOX- ( 391) 485 74.2 3.6e-13 NP_004180 (OMIM: 604747) transcription factor SOX- ( 240) 474 72.5 7e-13 NP_009015 (OMIM: 604974) transcription factor SOX- ( 276) 471 72.2 1e-12 NP_060889 (OMIM: 137940,601618,607823) transcripti ( 384) 430 67.0 5e-11 NP_071899 (OMIM: 610928,613674) transcription fact ( 414) 430 67.1 5.3e-11 NP_008874 (OMIM: 601947) transcription factor SOX- ( 315) 424 66.2 7.5e-11 NP_003098 (OMIM: 184430) transcription factor SOX- ( 474) 426 66.6 8.3e-11 NP_055402 (OMIM: 605923) transcription factor SOX- ( 446) 413 64.9 2.6e-10 NP_003099 (OMIM: 600898,615866) transcription fact ( 441) 412 64.8 2.8e-10 NP_008872 (OMIM: 602229,609136,611584,613266) tran ( 466) 408 64.3 4.1e-10 NP_000337 (OMIM: 114290,608160,616425) transcripti ( 509) 408 64.3 4.4e-10 NP_003131 (OMIM: 400044,400045,480000) sex-determi ( 204) 381 60.4 2.7e-09 NP_113627 (OMIM: 612202) transcription factor SOX- ( 388) 384 61.1 3.2e-09 NP_821078 (OMIM: 604975,616803) transcription fact ( 377) 321 52.9 8.9e-07 XP_011519144 (OMIM: 604975,616803) PREDICTED: tran ( 415) 321 52.9 9.5e-07 NP_001248343 (OMIM: 604975,616803) transcription f ( 642) 321 53.1 1.3e-06 XP_005245680 (OMIM: 604748) PREDICTED: transcripti ( 621) 320 53.0 1.4e-06 NP_005677 (OMIM: 604748) transcription factor SOX- ( 622) 320 53.0 1.4e-06 XP_016875389 (OMIM: 604975,616803) PREDICTED: tran ( 715) 321 53.2 1.4e-06 XP_016875390 (OMIM: 604975,616803) PREDICTED: tran ( 715) 321 53.2 1.4e-06 XP_016875387 (OMIM: 604975,616803) PREDICTED: tran ( 715) 321 53.2 1.4e-06 XP_016875388 (OMIM: 604975,616803) PREDICTED: tran ( 715) 321 53.2 1.4e-06 XP_016875386 (OMIM: 604975,616803) PREDICTED: tran ( 716) 321 53.2 1.4e-06 NP_001317714 (OMIM: 604975,616803) transcription f ( 728) 321 53.2 1.4e-06 XP_011519140 (OMIM: 604975,616803) PREDICTED: tran ( 729) 321 53.2 1.4e-06 NP_694534 (OMIM: 604975,616803) transcription fact ( 750) 321 53.2 1.4e-06 XP_016875385 (OMIM: 604975,616803) PREDICTED: tran ( 750) 321 53.2 1.4e-06 XP_011519137 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06 XP_016875381 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06 XP_011519139 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06 XP_016875383 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06 XP_016875382 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06 XP_011519136 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06 XP_016875384 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06 XP_016875380 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06 XP_016875379 (OMIM: 604975,616803) PREDICTED: tran ( 751) 321 53.2 1.4e-06 NP_001248344 (OMIM: 604975,616803) transcription f ( 753) 321 53.2 1.4e-06 XP_011519135 (OMIM: 604975,616803) PREDICTED: tran ( 754) 321 53.2 1.4e-06 NP_008871 (OMIM: 604975,616803) transcription fact ( 763) 321 53.2 1.4e-06 XP_011519134 (OMIM: 604975,616803) PREDICTED: tran ( 764) 321 53.2 1.4e-06 XP_016875378 (OMIM: 604975,616803) PREDICTED: tran ( 792) 321 53.2 1.5e-06 XP_016875377 (OMIM: 604975,616803) PREDICTED: tran ( 793) 321 53.2 1.5e-06 NP_201583 (OMIM: 607257) transcription factor SOX- ( 808) 314 52.3 2.8e-06 NP_001139283 (OMIM: 607257) transcription factor S ( 801) 311 51.9 3.7e-06 NP_059978 (OMIM: 607257) transcription factor SOX- ( 804) 311 52.0 3.7e-06 NP_001139291 (OMIM: 607257) transcription factor S ( 841) 311 52.0 3.8e-06 NP_848511 (OMIM: 606698) transcription factor SOX- ( 753) 287 48.8 3e-05 >>NP_008873 (OMIM: 601297) protein SOX-15 [Homo sapiens] (233 aa) initn: 1644 init1: 1644 opt: 1644 Z-score: 1172.7 bits: 224.3 E(85289): 1.4e-58 Smith-Waterman score: 1644; 100.0% identity (100.0% similar) in 233 aa overlap (1-233:1-233) 10 20 30 40 50 60 pF1KB8 MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWS 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 SAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 SAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRP 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 RRKAKSSGAGPSRCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSYSTAYLPGSYGSS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 RRKAKSSGAGPSRCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSYSTAYLPGSYGSS 130 140 150 160 170 180 190 200 210 220 230 pF1KB8 HCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNPPLAGAPMPLTHL ::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_008 HCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNPPLAGAPMPLTHL 190 200 210 220 230 >>NP_005625 (OMIM: 300123,312000,313430) transcription f (446 aa) initn: 520 init1: 442 opt: 508 Z-score: 372.8 bits: 77.2 E(85289): 5e-14 Smith-Waterman score: 508; 41.4% identity (64.0% similar) in 239 aa overlap (4-228:87-321) 10 20 pF1KB8 MALPGSSQDQAWSLEPPAATAAASSSS----GP : .. :: . ::: ..:..:: : NP_005 APGAPSPPATLAHLLPAPAMYSLLETELKNPVGTPTQAAGTGGPAAPGGAGKSSANAAGG 60 70 80 90 100 110 30 40 50 60 70 80 pF1KB8 QEREGAGSPAAPGT---LPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQ . :..: .: : ..:::::::::::: .:::.:: .:::::::::::::::. NP_005 ANSGGGSSGGASGGGGGTDQDRVKRPMNAFMVWSRGQRRKMALENPKMHNSEISKRLGAD 120 130 140 150 160 170 90 100 110 120 130 140 pF1KB8 WKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKS-----SGAGPSRCGQGRGNL :::: . :::::..::::::: :...:::::::::::.:. . . :: : NP_005 WKLLTDAEKRPFIDEAKRLRAVHMKEYPDYKYRPRRKTKTLLKKDKYSLPSGL-LPPGAA 180 190 200 210 220 230 150 160 170 180 190 pF1KB8 ASGGPLWGPGYATTQPSRGFGYRPPSYS--TAYLPGSYGSSHCKLEAPSPCSLPQSDPRL :... . . :...: : : : .:. ... :.:. . .: .: :. :.: NP_005 AAAAAAAAAAAAASSPV-GVGQRLDTYTHVNGWANGAYSLVQEQLGYAQPPSM--SSPPP 240 250 260 270 280 290 200 210 220 230 pF1KB8 QGELLPTYTHYLPPGSPTPYNPPLAGAPMPLTHL : : . . . . .:. :: : . : NP_005 PPALPPMHRYDMAGLQYSPMMPPGAQSYMNVAAAAAAASGYGGMAPSATAAAAAAYGQQP 300 310 320 330 340 350 >>NP_003097 (OMIM: 184429,189960,206900) transcription f (317 aa) initn: 477 init1: 458 opt: 499 Z-score: 368.3 bits: 75.9 E(85289): 8.9e-14 Smith-Waterman score: 499; 43.9% identity (64.5% similar) in 214 aa overlap (28-227:13-221) 10 20 30 40 50 pF1KB8 MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAG----SPAAPG----TLPLEKVKRP :::. :.: . :: : . : ..:::: NP_003 MYNMMETELKPPGPQQTSGGGGGNSTAAAAGGNQKNSP-DRVKRP 10 20 30 40 60 70 80 90 100 110 pF1KB8 MNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRD :::::::: .:::.:::.:::::::::::::::.::::.: :::::..::::::: :... NP_003 MNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKE 50 60 70 80 90 100 120 130 140 150 160 pF1KB8 YPDYKYRPRRKAKSSGAGPSRCGQGRGNLASGGPLWGPGYATTQP-SRGFGYRPPSYS-- .::::::::::.:. . : : :: :: . : .. . : . : ::. NP_003 HPDYKYRPRRKTKTLMKKDKYTLPG-GLLAPGGNSMASGVGVGAGLGAGVNQRMDSYAHM 110 120 130 140 150 160 170 180 190 200 210 220 pF1KB8 TAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYTH---YLPPGSPTPYNPPLAGA ... :::. . .: :. : . . ... : . . : .: : . . :. NP_003 NGWSNGSYSMMQDQLGYPQH---PGLNAHGAAQMQPMHRYDVSALQYNSMTSSQTYMNGS 170 180 190 200 210 220 230 pF1KB8 PMPLTHL : NP_003 PTYSMSYSQQGTPGMALGSMGSVVKSEASSSPPVVTSSSHSRAPCQAGDLRDMISMYLPG 230 240 250 260 270 280 >>NP_005977 (OMIM: 602148) transcription factor SOX-1 [H (391 aa) initn: 476 init1: 446 opt: 485 Z-score: 357.4 bits: 74.2 E(85289): 3.6e-13 Smith-Waterman score: 495; 39.8% identity (59.8% similar) in 246 aa overlap (14-228:10-246) 10 20 30 40 50 pF1KB8 MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPG------TLPLEKVKRPMN :. :... : .. ::: :.:. .. : ..:::::: NP_005 MYSMMMETDLHSPGGAQAPTNLSGPAGAGGGGGGGGGGGGGGGAKANQDRVKRPMN 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 AFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYP :::::: .:::.:::.:::::::::::::::.::...: :::::..::::::: :....: NP_005 AFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKVMSEAEKRPFIDEAKRLRALHMKEHP 60 70 80 90 100 110 120 130 140 150 pF1KB8 DYKYRPRRKAKS---------------SGAGPSRC------GQGRGNLASGGPLWGPGYA :::::::::.:. .::: . : : : : : : .:: : NP_005 DYKYRPRRKTKTLLKKDKYSLAGGLLAAGAGGGGAAVAMGVGVGVGAAAVGQRLESPGGA 120 130 140 150 160 170 160 170 180 190 200 210 pF1KB8 TTQPSRGFGY-RPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYTHYLP . : :: . ..... ::: ... . .: .. : : ..: NP_005 A-----GGGYAHVNGWANGAYPGSVAAAAAAAAMMQEAQLAYGQHPGAGGAHP-HAH--- 180 190 200 210 220 220 230 pF1KB8 PGSPTPYNP---PLAGAPMPLTHL :. : :..: : :: NP_005 PAHPHPHHPHAHPHNPQPMHRYDMGALQYSPISNSQGYMSASPSGYGGLPYGAAAAAAAA 230 240 250 260 270 280 >>NP_004180 (OMIM: 604747) transcription factor SOX-14 [ (240 aa) initn: 465 init1: 445 opt: 474 Z-score: 352.3 bits: 72.5 E(85289): 7e-13 Smith-Waterman score: 474; 48.1% identity (71.2% similar) in 156 aa overlap (45-192:4-159) 20 30 40 50 60 70 pF1KB8 EPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKM : ...::::::::::: .:::.:::.:::: NP_004 MSKPSDHIKRPMNAFMVWSRGQRRKMAQENPKM 10 20 30 80 90 100 110 120 pF1KB8 HNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKS-----SGA :::::::::::.::::.: ::::...:::::::.:....:::::::::: :. . NP_004 HNSEISKRLGAEWKLLSEAEKRPYIDEAKRLRAQHMKEHPDYKYRPRRKPKNLLKKDRYV 40 50 60 70 80 90 130 140 150 160 170 180 pF1KB8 GP-SRCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSYSTAYL--PGSYGSSHCKLEA : :. :.: :. . . : .. .. ::. . : :....:: . . NP_004 FPLPYLGDTDPLKAAGLPVGASDGLLSAPEKARAFLPPASAPYSLLDPAQFSSSAIQKMG 100 110 120 130 140 150 190 200 210 220 230 pF1KB8 PSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNPPLAGAPMPLTHL : .: NP_004 EVPHTLATGALPYASTLGYQNGAFGSLSCPSQHTHTHPSPTNPGYVVPCNCTAWSASTLQ 160 170 180 190 200 210 >>NP_009015 (OMIM: 604974) transcription factor SOX-21 [ (276 aa) initn: 476 init1: 458 opt: 471 Z-score: 349.4 bits: 72.2 E(85289): 1e-12 Smith-Waterman score: 474; 43.6% identity (62.7% similar) in 204 aa overlap (45-226:4-202) 20 30 40 50 60 70 pF1KB8 EPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKM :...:::::::::::: ::::.:::.:::: NP_009 MSKPVDHVKRPMNAFMVWSRAQRRKMAQENPKM 10 20 30 80 90 100 110 120 pF1KB8 HNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKS-------- :::::::::::.:::: :.:::::..::::::: :....:::::::::: :. NP_009 HNSEISKRLGAEWKLLTESEKRPFIDEAKRLRAMHMKEHPDYKYRPRRKPKTLLKKDKFA 40 50 60 70 80 90 130 140 150 160 170 pF1KB8 ----SGAG-------PS-RCGQGRGNLASGGPLWGPGYATTQPSRGFGYRPPSYSTAYLP : : :. . : : :.:: . : ..: .. . . . ...: NP_009 FPVPYGLGGVADAEHPALKAGAGLHAGAGGGLV--PESLLANPEKAAAAAAAAAARVFFP 100 110 120 130 140 150 180 190 200 210 220 230 pF1KB8 GSYGSSHCKLEAPSPCSLPQSDPRLQGEL--LPTYTHYLPPGSPTPYNPPLAGAPMPLTH : ... : . : : : : ... . . . :: .: : : ::: NP_009 QSAAAAAAAAAAAAAGS-PYSLLDLGSKMAEISSSSSGLPYASSLGY--PTAGAGAFHGA 160 170 180 190 200 pF1KB8 L NP_009 AAAAAAAAAAAGGHTHSHPSPGNPGYMIPCNCSAWPSPGLQPPLAYILLPGMGKPQLDPY 210 220 230 240 250 260 >>NP_060889 (OMIM: 137940,601618,607823) transcription f (384 aa) initn: 544 init1: 403 opt: 430 Z-score: 318.9 bits: 67.0 E(85289): 5e-11 Smith-Waterman score: 431; 37.7% identity (55.2% similar) in 239 aa overlap (2-231:37-255) 10 20 30 pF1KB8 MALPGSSQDQAWSLEPPAATAAASSSSGPQE : :.. : ::. . : : NP_060 GYGAQDDPPARRDCAWAPGHGAAADTRGLAAGPAALAAPAAPASPPSPQRSPPRSPEPG- 10 20 30 40 50 60 40 50 60 70 80 pF1KB8 REGAGSPAAPG---TLPLEKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWK : : :::. : . ...:::::::::.. .:...::::: .::. .:: :: :: NP_060 RYGL-SPAGRGERQAADESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAVLSKMLGKAWK 70 80 90 100 110 120 90 100 110 120 130 140 pF1KB8 LLDEDEKRPFVEEAKRLRARHLRDYPDYKYRPRRKAKSSGAGPSRCGQGRGNLASGGPLW :. :::::::::.:::..::::.:.:::::::: .. : . : .:: : NP_060 ELNAAEKRPFVEEAERLRVQHLRDHPNYKYRPRRKKQARKARRLEPGLLLPGLAPPQPPP 130 140 150 160 170 180 150 160 170 180 190 200 pF1KB8 GPGYATTQPSRGFGYRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYT : :.. .:.: :: :. : :.: : :.: : : . NP_060 EPFPAASGSARAFRELPP----------LGAEFDGLGLPTPERSP-----LDG-LEPGEA 190 200 210 220 210 220 230 pF1KB8 HYLPP-GSPT-----PYNPPLAGAPMPLTHL ..:: ..: :. : :: :. NP_060 AFFPPPAAPEDCALRPFRAPY--APTELSRDPGGCYGAPLAEALRTAPPAAPLAGLYYGT 230 240 250 260 270 280 >>NP_071899 (OMIM: 610928,613674) transcription factor S (414 aa) initn: 515 init1: 378 opt: 430 Z-score: 318.5 bits: 67.1 E(85289): 5.3e-11 Smith-Waterman score: 433; 38.1% identity (59.3% similar) in 231 aa overlap (17-225:29-249) 10 20 30 40 pF1KB8 MALPGSSQDQAWSLEPPAATAAASSSSGPQEREG-----AGSPA-APG : : . : : .. .: .:.:: : : NP_071 MSSPDAGYASDDQSQTQSALPAVMAGLGPCPWAESLSPIGDMKVKGEAPANSGAPAGAAG 10 20 30 40 50 60 50 60 70 80 90 100 pF1KB8 TLPLE-KVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEE : ...:::::::::.. .:...::::: .::.:.:: :: .:: : :::::::: NP_071 RAKGESRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALTLAEKRPFVEE 70 80 90 100 110 120 110 120 130 140 150 pF1KB8 AKRLRARHLRDYPDYKYRPRRKAKSSG----AGPSRCGQGRGNLASGGPLWG----PGYA :.:::..:..:.:.:::::::. . . : : .. . :. :: : : . NP_071 AERLRVQHMQDHPNYKYRPRRRKQVKRLKRVEGGFLHGLAEPQAAALGPEGGRVAMDGLG 130 140 150 160 170 180 160 170 180 190 200 pF1KB8 TTQPSRGFGYRPPSYSTAYLPGSYGSSH--CK-LEAPS----PCSLPQSDPRLQGELLPT : .:: :: :: .:. . :. : :: : :...: :.: . : NP_071 LQFPEQGFPAGPP-----LLPPHMGGHYRDCQSLGAPPLDGYPLPTPDTSP-LDG-VDPD 190 200 210 220 230 210 220 230 pF1KB8 YTHYLPPGSPTPYNPPLAGAPMPLTHL . . ..: : . : :: NP_071 PAFF---AAPMPGDCPAAGTYSYAQVSDYAGPPEPPAGPMHPRLGPEPAGPSIPGLLAPP 240 250 260 270 280 290 >>NP_008874 (OMIM: 601947) transcription factor SOX-12 [ (315 aa) initn: 450 init1: 392 opt: 424 Z-score: 315.8 bits: 66.2 E(85289): 7.5e-11 Smith-Waterman score: 425; 50.7% identity (68.8% similar) in 144 aa overlap (28-153:21-161) 10 20 30 40 50 60 pF1KB8 MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPGTLPLEKVKRPMNAFMVWS :: : ::: :. : : ..::::::::::: NP_008 MVQQRGARAKRDGGPPPPGPGPAE-EGAREPGWCKT-PSGHIKRPMNAFMVWS 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 SAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLRARHLRDYPDYKYRP . .::.. .: : :::.::::::: .:.::...:: :::.::.::: .:. ::::::::: NP_008 QHERRKIMDQWPDMHNAEISKRLGRRWQLLQDSEKIPFVREAERLRLKHMADYPDYKYRP 60 70 80 90 100 110 130 140 150 160 pF1KB8 RRKAKSSGA------------------GPSRCGQGRGNLASGGPLWGPGYATTQPSRGFG :.:.:.. : ::. :.: : :.:::: : . : NP_008 RKKSKGAPAKARPRPPGGSGGGSRLKPGPQLPGRG-GRRAAGGPLGGGAAAPEDDDEDDD 120 130 140 150 160 170 170 180 190 200 210 220 pF1KB8 YRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSPTPYNPP NP_008 EELLEVRLVETPGRELWRMVPAGRAARGQAERAQGPSGEGAAAAAAASPTPSEDEEPEEE 180 190 200 210 220 230 >>NP_003098 (OMIM: 184430) transcription factor SOX-4 [H (474 aa) initn: 446 init1: 396 opt: 426 Z-score: 315.0 bits: 66.6 E(85289): 8.3e-11 Smith-Waterman score: 433; 43.0% identity (67.4% similar) in 172 aa overlap (3-162:15-182) 10 20 30 40 pF1KB8 MALPGSSQDQAWSLEPPAATAAASSSSGPQEREGAGSPAAPG--TLPL : : :.:.. .:: :.: . : : :. :. : NP_003 MVQQTNNAENTEALLAGESSDSGAGLE---LGIASSPTPGSTASTG-GKADDPSWCKTPS 10 20 30 40 50 50 60 70 80 90 100 pF1KB8 EKVKRPMNAFMVWSSAQRRQMAQQNPKMHNSEISKRLGAQWKLLDEDEKRPFVEEAKRLR ..:::::::::::. .::.. .:.: :::.::::::: .:::: ...: ::..::.::: NP_003 GHIKRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLKDSDKIPFIREAERLR 60 70 80 90 100 110 110 120 130 140 150 pF1KB8 ARHLRDYPDYKYRPRRKAKSSGAG----------PSRCGQGRGNLASGGPLWGPGYATTQ .:. ::::::::::.:.::..:. :.. :. :. ..:: : : .... NP_003 LKHMADYPDYKYRPRKKVKSGNANSSSSAAASSKPGEKGDKVGGSGGGGHGGGGGGGSSN 120 130 140 150 160 170 160 170 180 190 200 210 pF1KB8 PSRGFGYRPPSYSTAYLPGSYGSSHCKLEAPSPCSLPQSDPRLQGELLPTYTHYLPPGSP . : : NP_003 AGGGGGGASGGGANSKPAQKKSCGSKVAGGAGGGVSKPHAKLILAGGGGGGKAAAAAAAS 180 190 200 210 220 230 233 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 02:57:45 2016 done: Mon Nov 7 02:57:47 2016 Total Scan time: 8.170 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]