FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1474, 502 aa 1>>>pF1KE1474 502 - 502 aa - 502 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.8688+/-0.000884; mu= 20.4844+/- 0.053 mean_var=62.8745+/-12.334, 0's: 0 Z-trim(106.0): 16 B-trim: 3 in 1/50 Lambda= 0.161747 statistics sampled from 8738 (8744) to 8738 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.637), E-opt: 0.2 (0.269), width: 16 Scan time: 3.190 The best scores are: opt bits E(32554) CCDS2874.1 IL17RB gene_id:55540|Hs108|chr3 ( 502) 3442 812.0 0 CCDS77645.1 IL17RA gene_id:23765|Hs108|chr22 ( 832) 337 87.6 5.7e-17 CCDS13739.1 IL17RA gene_id:23765|Hs108|chr22 ( 866) 302 79.5 1.7e-14 >>CCDS2874.1 IL17RB gene_id:55540|Hs108|chr3 (502 aa) initn: 3442 init1: 3442 opt: 3442 Z-score: 4337.1 bits: 812.0 E(32554): 0 Smith-Waterman score: 3442; 100.0% identity (100.0% similar) in 502 aa overlap (1-502:1-502) 10 20 30 40 50 60 pF1KE1 MSLVLLSLAALCRSAVPREPTVQCGSETGPSPEWMLQHDLIPGDLRDLRVEPVTTSVATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 MSLVLLSLAALCRSAVPREPTVQCGSETGPSPEWMLQHDLIPGDLRDLRVEPVTTSVATG 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE1 DYSILMNVSWVLRADASIRLLKATKICVTGKSNFQSYSCVRCNYTEAFQTQTRPSGGKWT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 DYSILMNVSWVLRADASIRLLKATKICVTGKSNFQSYSCVRCNYTEAFQTQTRPSGGKWT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE1 FSYIGFPVELNTVYFIGAHNIPNANMNEDGPSMSVNFTSPGCLDHIMKYKKKCVKAGSLW :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 FSYIGFPVELNTVYFIGAHNIPNANMNEDGPSMSVNFTSPGCLDHIMKYKKKCVKAGSLW 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE1 DPNITACKKNEETVEVNFTTTPLGNRYMALIQHSTIIGFSQVFEPHQKKQTRASVVIPVT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 DPNITACKKNEETVEVNFTTTPLGNRYMALIQHSTIIGFSQVFEPHQKKQTRASVVIPVT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE1 GDSEGATVQLTPYFPTCGSDCIRHKGTVVLCPQTGVPFPLDNNKSKPGGWLPLLLLSLLV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 GDSEGATVQLTPYFPTCGSDCIRHKGTVVLCPQTGVPFPLDNNKSKPGGWLPLLLLSLLV 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE1 ATWVLVAGIYLMWRHERIKKTSFSTTTLLPPIKVLVVYPSEICFHHTICYFTEFLQNHCR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 ATWVLVAGIYLMWRHERIKKTSFSTTTLLPPIKVLVVYPSEICFHHTICYFTEFLQNHCR 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE1 SEVILEKWQKKKIAEMGPVQWLATQKKAADKVVFLLSNDVNSVCDGTCGKSEGSPSENSQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 SEVILEKWQKKKIAEMGPVQWLATQKKAADKVVFLLSNDVNSVCDGTCGKSEGSPSENSQ 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE1 DLFPLAFNLFCSDLRSQIHLHKYVVVYFREIDTKDDYNALSVCPKYHLMKDATAFCAELL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS28 DLFPLAFNLFCSDLRSQIHLHKYVVVYFREIDTKDDYNALSVCPKYHLMKDATAFCAELL 430 440 450 460 470 480 490 500 pF1KE1 HVKQQVSAGKRSQACHDGCCSL :::::::::::::::::::::: CCDS28 HVKQQVSAGKRSQACHDGCCSL 490 500 >>CCDS77645.1 IL17RA gene_id:23765|Hs108|chr22 (832 aa) initn: 342 init1: 134 opt: 337 Z-score: 418.1 bits: 87.6 E(32554): 5.7e-17 Smith-Waterman score: 507; 24.8% identity (53.5% similar) in 488 aa overlap (13-469:39-492) 10 20 30 40 pF1KE1 MSLVLLSLAALCRSAVPREPTVQCGSETGP--SPEWMLQHDL :. : .: ..: ... . :. ..: CCDS77 SAVPGPLLGLLLLLLGVLAPGGASLRLLDHRALVCSQPGLNCTVKNSTCLDDSWIHPRNL 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 IPGDLRDLRVEPVTTSVATGDYSILMNVSWVLRADASIRLLKATKICVTGKSNFQSYSCV :.. .::... . . :: . .. :.:..:::: :..... : . : . :: CCDS77 TPSSPKDLQIQLHFAHTQQGDLFPVAHIEWTLQTDASILYLEGAELSVL-QLNTNERLCV 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE1 RCNYTEAFQTQTRPSGGKWTFSYIGFPVELNTVYFIGAHNIPNANMNEDGPSMSVNFTSP : . : .. : .: :.. : :. . : . .:..:. . : .: :: : CCDS77 RFE----FLSKLRHHHRRWRFTFSHFVVDPDQEYEVTVHHLPKPIPDGDPNHQSKNFLVP 130 140 150 160 170 180 170 180 190 200 210 pF1KE1 GCLDHIMKYKKKCVKAGSLWDPNITACKKNEETVEVNFTTTPLGNRYMALI-------QH : :: :...:::::::::. . . ..:.:: ...:. :. .: CCDS77 DCEHARMKVTTPCMSSGSLWDPNITVETLEAHQLRVSFTLWNESTHYQILLTSFPHMENH 190 200 210 220 230 240 220 230 240 250 260 pF1KE1 STIIGFSQVFEPHQKK-QTRASVVIPVTGDSEGAT---VQLTPYFPTCGSDCIRHKGTVV : . . .. :. .. . :..:.. . . .: ::. :.: .: .::.::..:: CCDS77 SCFEHMHHIPAPRPEEFHQRSNVTLTLR-NLKGCCRHQVQIQPFFSSCLNDCLRHSATVS 250 260 270 280 290 300 270 280 290 300 310 320 pF1KE1 LCPQT-GVPFPLDNNKSKPGGWLPLLLLSLLVATWVLVAGIYLMWRHERIKKTSFSTTTL ::. .: :. . ::. . . .. .. : CCDS77 -CPEMPDTPEPIPG----PGSE---------------------KYSDDTKYTDGLPAADL 310 320 330 330 340 350 360 370 380 pF1KE1 LPPI----KVLVVYPSEICFH-HTICYFTEFLQNHCRSEVILEKWQKKKIAEMGPVQWLA .:: :: ..: .. .. .. :..:: . : .:: :. ... :.: : . :.. CCDS77 IPPPLKPRKVWIIYSADHPLYVDVVLKFAQFLLTACGTEVALDLLEEQAISEAGVMTWVG 340 350 360 370 380 390 390 400 410 420 430 pF1KE1 TQKK----AADKVVFLLSNDVNSVCDGTCGKSEGSP-------SENSQDLFPLAFNLFCS ::. . .:.. : : . . .. :. :.: .. ::: :.:.. CCDS77 RQKQEMVESNSKIIVLCSRGTRAKWQALLGR--GAPVRLRCDHGKPVGDLFTAAMNMILP 400 410 420 430 440 450 440 450 460 470 480 490 pF1KE1 DLRSQIHLHKYVVVYFREIDTKDDYNAL-SVCPKYHLMKDATAFCAELLHVKQQVSAGKR :.. . ::: :: :.. : : .. :.: :: CCDS77 DFKRPACFGTYVVCYFSEVSCDGDVPDLFGAAPRYPLMDRFEEVYFRIQDLEMFQPGRMH 460 470 480 490 500 510 500 pF1KE1 SQACHDGCCSL CCDS77 RVGELSGDNYLRSPGGRQLRAALDRFRDWQVRCPDWFECENLYSADDQDAPSLDEEVFEE 520 530 540 550 560 570 >>CCDS13739.1 IL17RA gene_id:23765|Hs108|chr22 (866 aa) initn: 351 init1: 134 opt: 302 Z-score: 373.7 bits: 79.5 E(32554): 1.7e-14 Smith-Waterman score: 563; 25.7% identity (54.6% similar) in 498 aa overlap (13-469:39-526) 10 20 30 40 pF1KE1 MSLVLLSLAALCRSAVPREPTVQCGSETGP--SPEWMLQHDL :. : .: ..: ... . :. ..: CCDS13 SAVPGPLLGLLLLLLGVLAPGGASLRLLDHRALVCSQPGLNCTVKNSTCLDDSWIHPRNL 10 20 30 40 50 60 50 60 70 80 90 100 pF1KE1 IPGDLRDLRVEPVTTSVATGDYSILMNVSWVLRADASIRLLKATKICVTGKSNFQSYSCV :.. .::... . . :: . .. :.:..:::: :..... : . : . :: CCDS13 TPSSPKDLQIQLHFAHTQQGDLFPVAHIEWTLQTDASILYLEGAELSVL-QLNTNERLCV 70 80 90 100 110 120 110 120 130 140 150 160 pF1KE1 RCNYTEAFQTQTRPSGGKWTFSYIGFPVELNTVYFIGAHNIPNANMNEDGPSMSVNFTSP : . : .. : .: :.. : :. . : . .:..:. . : .: :: : CCDS13 RFE----FLSKLRHHHRRWRFTFSHFVVDPDQEYEVTVHHLPKPIPDGDPNHQSKNFLVP 130 140 150 160 170 180 170 180 190 200 210 pF1KE1 GCLDHIMKYKKKCVKAGSLWDPNITACKKNEETVEVNFTTTPLGNRYMALI-------QH : :: :...:::::::::. . . ..:.:: ...:. :. .: CCDS13 DCEHARMKVTTPCMSSGSLWDPNITVETLEAHQLRVSFTLWNESTHYQILLTSFPHMENH 190 200 210 220 230 240 220 230 240 250 260 pF1KE1 STIIGFSQVFEPHQKK-QTRASVVIPVTGDSEGAT---VQLTPYFPTCGSDCIRHKGTVV : . . .. :. .. . :..:.. . . .: ::. :.: .: .::.::..:: CCDS13 SCFEHMHHIPAPRPEEFHQRSNVTLTLR-NLKGCCRHQVQIQPFFSSCLNDCLRHSATVS 250 260 270 280 290 300 270 280 290 300 310 320 pF1KE1 LCPQT-GVPFPLDNNKSKPGGWLPLLLLSLLVATWVLVAGIYLMWRHERIKKTSFSTTT- ::. .: :. . :. . :::.. .:. . . :: . ..: : CCDS13 -CPEMPDTPEPIPDYMPLWVYWFITGISILLVGSVILLI-VCMTWRLAGPGSEKYSDDTK 310 320 330 340 350 360 330 340 350 360 370 pF1KE1 ---------LLPPI----KVLVVYPSEICFH-HTICYFTEFLQNHCRSEVILEKWQKKKI :.:: :: ..: .. .. .. :..:: . : .:: :. ... : CCDS13 YTDGLPAADLIPPPLKPRKVWIIYSADHPLYVDVVLKFAQFLLTACGTEVALDLLEEQAI 370 380 390 400 410 420 380 390 400 410 420 pF1KE1 AEMGPVQWLATQKK----AADKVVFLLSNDVNSVCDGTCGKSEGSP-------SENSQDL .: : . :.. ::. . .:.. : : . . .. :. :.: .. :: CCDS13 SEAGVMTWVGRQKQEMVESNSKIIVLCSRGTRAKWQALLGR--GAPVRLRCDHGKPVGDL 430 440 450 460 470 430 440 450 460 470 480 pF1KE1 FPLAFNLFCSDLRSQIHLHKYVVVYFREIDTKDDYNAL-SVCPKYHLMKDATAFCAELLH : :.:.. :.. . ::: :: :.. : : .. :.: :: CCDS13 FTAAMNMILPDFKRPACFGTYVVCYFSEVSCDGDVPDLFGAAPRYPLMDRFEEVYFRIQD 480 490 500 510 520 530 490 500 pF1KE1 VKQQVSAGKRSQACHDGCCSL CCDS13 LEMFQPGRMHRVGELSGDNYLRSPGGRQLRAALDRFRDWQVRCPDWFECENLYSADDQDA 540 550 560 570 580 590 502 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 15:42:50 2016 done: Mon Nov 7 15:42:50 2016 Total Scan time: 3.190 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]