Result of FASTA (omim) for pFN21AE5211
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5211, 207 aa
  1>>>pF1KE5211 207 - 207 aa - 207 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0847+/-0.000334; mu= 14.7314+/- 0.021
 mean_var=63.4128+/-12.829, 0's: 0 Z-trim(115.8): 24  B-trim: 468 in 1/53
 Lambda= 0.161059
 statistics sampled from 26506 (26530) to 26506 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.311), width:  16
 Scan time:  4.390

The best scores are:                                      opt bits E(85289)
NP_003245 (OMIM: 305370) metalloproteinase inhibit ( 207) 1451 345.3   4e-95
NP_003246 (OMIM: 188825) metalloproteinase inhibit ( 220)  554 136.9 2.3e-32
NP_000353 (OMIM: 136900,188826) metalloproteinase  ( 211)  528 130.9 1.5e-30
NP_003247 (OMIM: 601915) metalloproteinase inhibit ( 224)  502 124.8   1e-28
XP_016885255 (OMIM: 305370) PREDICTED: metalloprot ( 261)  297 77.3 2.6e-14


>>NP_003245 (OMIM: 305370) metalloproteinase inhibitor 1  (207 aa)
 initn: 1451 init1: 1451 opt: 1451  Z-score: 1828.7  bits: 345.3 E(85289): 4e-95
Smith-Waterman score: 1451; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207)

               10        20        30        40        50        60
pF1KE5 MAPFEPLASGILLLLWLIAPSRACTCVPPHPQTAFCNSDLVIRAKFVGTPEVNQTTLYQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAPFEPLASGILLLLWLIAPSRACTCVPPHPQTAFCNSDLVIRAKFVGTPEVNQTTLYQR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAGKLQDGLLHIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 YEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAGKLQDGLLHIT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 TCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTHCLWTDQLLQGSEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 TCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTHCLWTDQLLQGSEK
              130       140       150       160       170       180

              190       200       
pF1KE5 GFQSRHLACLPREPGLCTWQSLRSQIA
       :::::::::::::::::::::::::::
NP_003 GFQSRHLACLPREPGLCTWQSLRSQIA
              190       200       

>>NP_003246 (OMIM: 188825) metalloproteinase inhibitor 2  (220 aa)
 initn: 547 init1: 199 opt: 554  Z-score: 701.9  bits: 136.9 E(85289): 2.3e-32
Smith-Waterman score: 554; 42.8% identity (67.7% similar) in 201 aa overlap (7-199:10-203)

                  10        20        30        40        50       
pF1KE5    MAPFEPLASGILLLLWLIAPSRACTCVPPHPQTAFCNSDLVIRAKFVGTPEVNQ-TT
                :: :.:::  :. :. ::.: : ::: ::::.:.::::: :.  ::.. . 
NP_003 MGAAARTLRLALGLLLLATLLRPADACSCSPVHPQQAFCNADVVIRAKAVSEKEVDSGND
               10        20        30        40        50        60

             60          70        80        90       100       110
pF1KE5 LY----QR--YEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAG
       .:    .:  ::::. ::.:: .      ::.:.::    .:::      .. .:.::::
NP_003 IYGNPIKRIQYEIKQIKMFKGPE-----KDIEFIYTAPSSAVCGVSLDVGGK-KEYLIAG
               70        80             90       100        110    

               120       130       140       150       160         
pF1KE5 KLQ-DGLLHITTCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTHCL
       : . :: .::: :.:..::..:: .:...... : .::: : .  :  ::: ..:  .::
NP_003 KAEGDGKMHITLCDFIVPWDTLSTTQKKSLNHRYQMGCE-CKITRCPMIPCYISSPDECL
          120       130       140       150        160       170   

     170       180       190       200                
pF1KE5 WTDQLLQGSEKGFQSRHLACLPREPGLCTWQSLRSQIA         
       : : . . . .: :.. .::. :  : :.:                 
NP_003 WMDWVTEKNINGHQAKFFACIKRSDGSCAWYRGAAPPKQEFLDIEDP
           180       190       200       210       220

>>NP_000353 (OMIM: 136900,188826) metalloproteinase inhi  (211 aa)
 initn: 512 init1: 160 opt: 528  Z-score: 669.5  bits: 130.9 E(85289): 1.5e-30
Smith-Waterman score: 528; 38.6% identity (65.8% similar) in 202 aa overlap (1-199:1-194)

               10        20          30        40        50        
pF1KE5 MAPFEPLASGILLLLWLIAP--SRACTCVPPHPQTAFCNSDLVIRAKFVGTPEVNQTTLY
       :.:.  :   .::  : ..   ..:::: : ::: ::::::.::::: ::   :..  . 
NP_000 MTPWLGLI--VLLGSWSLGDWGAEACTCSPSHPQDAFCNSDIVIRAKVVGKKLVKEGPFG
                 10        20        30        40        50        

       60         70        80        90       100       110       
pF1KE5 QR-YEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAGKLQDGLL
          : ::. :::.::  .     .....: : ::.::   . .  . ..:..:.. :: .
NP_000 TLVYTIKQMKMYRGFTKM---PHVQYIHTEASESLCGL--KLEVNKYQYLLTGRVYDGKM
       60        70           80        90         100       110   

       120       130       140       150       160       170       
pF1KE5 HITTCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTHCLWTDQLLQG
       .   :.::  :..:.:.::.:..  : .::. : .  :  .:: . : ..:::::.: . 
NP_000 YTGLCNFVERWDQLTLSQRKGLNYRYHLGCN-CKIKSCYYLPCFVTSKNECLWTDMLSNF
           120       130       140        150       160       170  

       180       190       200                
pF1KE5 SEKGFQSRHLACLPREPGLCTWQSLRSQIA         
       .  :.::.: ::. .. : :.:                 
NP_000 GYPGYQSKHYACIRQKGGYCSWYRGWAPPDKSIINATDP
            180       190       200       210 

>>NP_003247 (OMIM: 601915) metalloproteinase inhibitor 4  (224 aa)
 initn: 411 init1: 152 opt: 502  Z-score: 636.4  bits: 124.8 E(85289): 1e-28
Smith-Waterman score: 502; 37.4% identity (67.0% similar) in 206 aa overlap (6-199:7-207)

                10          20           30        40        50    
pF1KE5  MAPFEPLASGILLL--LWLIAP---SRACTCVPPHPQTAFCNSDLVIRAKFVGTPEV--
             :  : .:::  : :. :   ..::.:.: :::  .:.: ::::::. .   :  
NP_003 MPGSPRPAPSWVLLLRLLALLRPPGLGEACSCAPAHPQQHICHSALVIRAKISSEKVVPA
               10        20        30        40        50        60

                 60        70        80        90       100        
pF1KE5 ----NQTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLI
            .:  . :::::. ::.:::. .    :....:::   :.::  .   : ....:.
NP_003 SADPADTEKMLRYEIKQIKMFKGFEKV---KDVQYIYTPFDSSLCGV-KLEANSQKQYLL
               70        80           90       100        110      

      110        120       130       140       150       160       
pF1KE5 AGK-LQDGLLHITTCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTH
       .:. :.:: . :  :... ::..:::.::..... : ..:  : .  : ..:: ... ..
NP_003 TGQVLSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCG-CQITTCYTVPCTISAPNE
        120       130       140       150        160       170     

       170       180       190       200                
pF1KE5 CLWTDQLLQGSEKGFQSRHLACLPREPGLCTWQSLRSQIA         
       ::::: ::. .  :.:..: .:. .  : :.:                 
NP_003 CLWTDWLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLRKEFVDIVQP
         180       190       200       210       220    

>>XP_016885255 (OMIM: 305370) PREDICTED: metalloproteina  (261 aa)
 initn: 315 init1: 297 opt: 297  Z-score: 378.0  bits: 77.3 E(85289): 2.6e-14
Smith-Waterman score: 297; 100.0% identity (100.0% similar) in 43 aa overlap (110-152:104-146)

      80        90       100       110       120       130         
pF1KE5 DIRFVYTPAMESVCGYFHRSHNRSEEFLIAGKLQDGLLHITTCSFVAPWNSLSLAQRRGF
                                     ::::::::::::::::::::::::::::::
XP_016 FSLSEGRAFGSLAAQPITSCLSVPAPPFSLGKLQDGLLHITTCSFVAPWNSLSLAQRRGF
            80        90       100       110       120       130   

     140       150       160       170       180       190         
pF1KE5 TKTYTVGCEECTVFPCLSIPCKLQSGTHCLWTDQLLQGSEKGFQSRHLACLPREPGLCTW
       :::::::::::::                                               
XP_016 TKTYTVGCEECTVSAWTLTSNGRSFPGPFPKSWACFLLPLAILCPCGCSPTLRAVPDLSC
           140       150       160       170       180       190   




207 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 22:32:45 2016 done: Mon Nov  7 22:32:46 2016
 Total Scan time:  4.390 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]
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