FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5211, 207 aa 1>>>pF1KE5211 207 - 207 aa - 207 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1840+/-0.000688; mu= 14.1389+/- 0.041 mean_var=62.3136+/-12.317, 0's: 0 Z-trim(109.4): 18 B-trim: 0 in 0/51 Lambda= 0.162474 statistics sampled from 10838 (10848) to 10838 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.714), E-opt: 0.2 (0.333), width: 16 Scan time: 2.010 The best scores are: opt bits E(32554) CCDS14281.1 TIMP1 gene_id:7076|Hs108|chrX ( 207) 1451 348.1 2.2e-96 CCDS11758.1 TIMP2 gene_id:7077|Hs108|chr17 ( 220) 554 137.9 4.6e-33 CCDS13911.1 TIMP3 gene_id:7078|Hs108|chr22 ( 211) 528 131.8 3e-31 CCDS2608.1 TIMP4 gene_id:7079|Hs108|chr3 ( 224) 502 125.7 2.2e-29 >>CCDS14281.1 TIMP1 gene_id:7076|Hs108|chrX (207 aa) initn: 1451 init1: 1451 opt: 1451 Z-score: 1843.8 bits: 348.1 E(32554): 2.2e-96 Smith-Waterman score: 1451; 100.0% identity (100.0% similar) in 207 aa overlap (1-207:1-207) 10 20 30 40 50 60 pF1KE5 MAPFEPLASGILLLLWLIAPSRACTCVPPHPQTAFCNSDLVIRAKFVGTPEVNQTTLYQR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 MAPFEPLASGILLLLWLIAPSRACTCVPPHPQTAFCNSDLVIRAKFVGTPEVNQTTLYQR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 YEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAGKLQDGLLHIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 YEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAGKLQDGLLHIT 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 TCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTHCLWTDQLLQGSEK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS14 TCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTHCLWTDQLLQGSEK 130 140 150 160 170 180 190 200 pF1KE5 GFQSRHLACLPREPGLCTWQSLRSQIA ::::::::::::::::::::::::::: CCDS14 GFQSRHLACLPREPGLCTWQSLRSQIA 190 200 >>CCDS11758.1 TIMP2 gene_id:7077|Hs108|chr17 (220 aa) initn: 547 init1: 199 opt: 554 Z-score: 707.0 bits: 137.9 E(32554): 4.6e-33 Smith-Waterman score: 554; 42.8% identity (67.7% similar) in 201 aa overlap (7-199:10-203) 10 20 30 40 50 pF1KE5 MAPFEPLASGILLLLWLIAPSRACTCVPPHPQTAFCNSDLVIRAKFVGTPEVNQ-TT :: :.::: :. :. ::.: : ::: ::::.:.::::: :. ::.. . CCDS11 MGAAARTLRLALGLLLLATLLRPADACSCSPVHPQQAFCNADVVIRAKAVSEKEVDSGND 10 20 30 40 50 60 60 70 80 90 100 110 pF1KE5 LY----QR--YEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAG .: .: ::::. ::.:: . ::.:.:: .::: .. .:.:::: CCDS11 IYGNPIKRIQYEIKQIKMFKGPE-----KDIEFIYTAPSSAVCGVSLDVGGK-KEYLIAG 70 80 90 100 110 120 130 140 150 160 pF1KE5 KLQ-DGLLHITTCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTHCL : . :: .::: :.:..::..:: .:...... : .::: : . : ::: ..: .:: CCDS11 KAEGDGKMHITLCDFIVPWDTLSTTQKKSLNHRYQMGCE-CKITRCPMIPCYISSPDECL 120 130 140 150 160 170 170 180 190 200 pF1KE5 WTDQLLQGSEKGFQSRHLACLPREPGLCTWQSLRSQIA : : . . . .: :.. .::. : : :.: CCDS11 WMDWVTEKNINGHQAKFFACIKRSDGSCAWYRGAAPPKQEFLDIEDP 180 190 200 210 220 >>CCDS13911.1 TIMP3 gene_id:7078|Hs108|chr22 (211 aa) initn: 512 init1: 160 opt: 528 Z-score: 674.4 bits: 131.8 E(32554): 3e-31 Smith-Waterman score: 528; 38.6% identity (65.8% similar) in 202 aa overlap (1-199:1-194) 10 20 30 40 50 pF1KE5 MAPFEPLASGILLLLWLIAP--SRACTCVPPHPQTAFCNSDLVIRAKFVGTPEVNQTTLY :.:. : .:: : .. ..:::: : ::: ::::::.::::: :: :.. . CCDS13 MTPWLGLI--VLLGSWSLGDWGAEACTCSPSHPQDAFCNSDIVIRAKVVGKKLVKEGPFG 10 20 30 40 50 60 70 80 90 100 110 pF1KE5 QR-YEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAGKLQDGLL : ::. :::.:: . .....: : ::.:: . . . ..:..:.. :: . CCDS13 TLVYTIKQMKMYRGFTKM---PHVQYIHTEASESLCGL--KLEVNKYQYLLTGRVYDGKM 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE5 HITTCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTHCLWTDQLLQG . :.:: :..:.:.::.:.. : .::. : . : .:: . : ..:::::.: . CCDS13 YTGLCNFVERWDQLTLSQRKGLNYRYHLGCN-CKIKSCYYLPCFVTSKNECLWTDMLSNF 120 130 140 150 160 170 180 190 200 pF1KE5 SEKGFQSRHLACLPREPGLCTWQSLRSQIA . :.::.: ::. .. : :.: CCDS13 GYPGYQSKHYACIRQKGGYCSWYRGWAPPDKSIINATDP 180 190 200 210 >>CCDS2608.1 TIMP4 gene_id:7079|Hs108|chr3 (224 aa) initn: 411 init1: 152 opt: 502 Z-score: 641.1 bits: 125.7 E(32554): 2.2e-29 Smith-Waterman score: 502; 37.4% identity (67.0% similar) in 206 aa overlap (6-199:7-207) 10 20 30 40 50 pF1KE5 MAPFEPLASGILLL--LWLIAP---SRACTCVPPHPQTAFCNSDLVIRAKFVGTPEV-- : : .::: : :. : ..::.:.: ::: .:.: ::::::. . : CCDS26 MPGSPRPAPSWVLLLRLLALLRPPGLGEACSCAPAHPQQHICHSALVIRAKISSEKVVPA 10 20 30 40 50 60 60 70 80 90 100 pF1KE5 ----NQTTLYQRYEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLI .: . :::::. ::.:::. . :....::: :.:: . : ....:. CCDS26 SADPADTEKMLRYEIKQIKMFKGFEKV---KDVQYIYTPFDSSLCGV-KLEANSQKQYLL 70 80 90 100 110 110 120 130 140 150 160 pF1KE5 AGK-LQDGLLHITTCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTH .:. :.:: . : :... ::..:::.::..... : ..: : . : ..:: ... .. CCDS26 TGQVLSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCG-CQITTCYTVPCTISAPNE 120 130 140 150 160 170 170 180 190 200 pF1KE5 CLWTDQLLQGSEKGFQSRHLACLPREPGLCTWQSLRSQIA ::::: ::. . :.:..: .:. . : :.: CCDS26 CLWTDWLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLRKEFVDIVQP 180 190 200 210 220 207 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:32:45 2016 done: Mon Nov 7 22:32:45 2016 Total Scan time: 2.010 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]