FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6204, 274 aa 1>>>pF1KE6204 274 - 274 aa - 274 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.4688+/-0.000805; mu= 14.8240+/- 0.049 mean_var=75.7129+/-14.885, 0's: 0 Z-trim(108.3): 10 B-trim: 4 in 1/50 Lambda= 0.147397 statistics sampled from 10147 (10154) to 10147 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.312), width: 16 Scan time: 1.820 The best scores are: opt bits E(32554) CCDS12415.1 UQCRFS1 gene_id:7386|Hs108|chr19 ( 274) 1796 390.9 5e-109 >>CCDS12415.1 UQCRFS1 gene_id:7386|Hs108|chr19 (274 aa) initn: 1796 init1: 1796 opt: 1796 Z-score: 2070.8 bits: 390.9 E(32554): 5e-109 Smith-Waterman score: 1796; 99.6% identity (100.0% similar) in 274 aa overlap (1-274:1-274) 10 20 30 40 50 60 pF1KE6 MLSVAARSGPFAPVLSATSRGVAGALRPLVQATVPATPEQPVLDLKRPFLSRESLSGQAV :::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MLSVASRSGPFAPVLSATSRGVAGALRPLVQATVPATPEQPVLDLKRPFLSRESLSGQAV 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 RRPLVASVGLNVPASVCYSHTDIKVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVTGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RRPLVASVGLNVPASVCYSHTDIKVPDFSEYRRLEVLDSTKSSRESSEARKGFSYLVTGV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 TTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 TTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRT 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 QKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 QKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHG 190 200 210 220 230 240 250 260 270 pF1KE6 SHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG :::::::::::::::::::::::::::::::::: CCDS12 SHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 250 260 270 274 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:03:35 2016 done: Tue Nov 8 11:03:36 2016 Total Scan time: 1.820 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]