FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5235, 196 aa 1>>>pF1KE5235 196 - 196 aa - 196 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.3200+/-0.000411; mu= 4.7125+/- 0.026 mean_var=139.5459+/-27.408, 0's: 0 Z-trim(115.8): 7 B-trim: 251 in 1/53 Lambda= 0.108571 statistics sampled from 26429 (26434) to 26429 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.657), E-opt: 0.2 (0.31), width: 16 Scan time: 5.350 The best scores are: opt bits E(85289) NP_000972 (OMIM: 180466) 60S ribosomal protein L19 ( 196) 1259 208.2 7.1e-54 NP_001317129 (OMIM: 180466) 60S ribosomal protein ( 194) 1247 206.3 2.6e-53 >>NP_000972 (OMIM: 180466) 60S ribosomal protein L19 iso (196 aa) initn: 1259 init1: 1259 opt: 1259 Z-score: 1088.2 bits: 208.2 E(85289): 7.1e-54 Smith-Waterman score: 1259; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196) 10 20 30 40 50 60 pF1KE5 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 130 140 150 160 170 180 190 pF1KE5 KEEIIKTLSKEEETKK :::::::::::::::: NP_000 KEEIIKTLSKEEETKK 190 >>NP_001317129 (OMIM: 180466) 60S ribosomal protein L19 (194 aa) initn: 1247 init1: 1247 opt: 1247 Z-score: 1078.1 bits: 206.3 E(85289): 2.6e-53 Smith-Waterman score: 1247; 100.0% identity (100.0% similar) in 194 aa overlap (3-196:1-194) 10 20 30 40 50 60 pF1KE5 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 120 130 140 150 160 170 190 pF1KE5 KEEIIKTLSKEEETKK :::::::::::::::: NP_001 KEEIIKTLSKEEETKK 180 190 196 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:45:54 2016 done: Mon Nov 7 22:45:54 2016 Total Scan time: 5.350 Total Display time: -0.040 Function used was FASTA [36.3.4 Apr, 2011]