FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5235, 196 aa 1>>>pF1KE5235 196 - 196 aa - 196 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.8778+/-0.00101; mu= 7.4526+/- 0.060 mean_var=130.9435+/-25.479, 0's: 0 Z-trim(108.5): 11 B-trim: 0 in 0/52 Lambda= 0.112081 statistics sampled from 10276 (10279) to 10276 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.664), E-opt: 0.2 (0.316), width: 16 Scan time: 1.830 The best scores are: opt bits E(32554) CCDS42312.1 RPL19 gene_id:6143|Hs108|chr17 ( 196) 1259 214.2 4.1e-56 CCDS82113.1 RPL19 gene_id:6143|Hs108|chr17 ( 194) 1247 212.3 1.5e-55 >>CCDS42312.1 RPL19 gene_id:6143|Hs108|chr17 (196 aa) initn: 1259 init1: 1259 opt: 1259 Z-score: 1121.0 bits: 214.2 E(32554): 4.1e-56 Smith-Waterman score: 1259; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196) 10 20 30 40 50 60 pF1KE5 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE5 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS42 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 130 140 150 160 170 180 190 pF1KE5 KEEIIKTLSKEEETKK :::::::::::::::: CCDS42 KEEIIKTLSKEEETKK 190 >>CCDS82113.1 RPL19 gene_id:6143|Hs108|chr17 (194 aa) initn: 1247 init1: 1247 opt: 1247 Z-score: 1110.6 bits: 212.3 E(32554): 1.5e-55 Smith-Waterman score: 1247; 100.0% identity (100.0% similar) in 194 aa overlap (3-196:1-194) 10 20 30 40 50 60 pF1KE5 MSMLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 MLRLQKRLASSVLRCGKKKVWLDPNETNEIANANSRQQIRKLIKDGLIIRKPVTVHSR 10 20 30 40 50 70 80 90 100 110 120 pF1KE5 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 ARCRKNTLARRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKIDRHMY 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE5 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS82 HSLYLKVKGNVFKNKRILMEHIHKLKADKARKKLLADQAEARRSKTKEARKRREERLQAK 120 130 140 150 160 170 190 pF1KE5 KEEIIKTLSKEEETKK :::::::::::::::: CCDS82 KEEIIKTLSKEEETKK 180 190 196 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 22:45:53 2016 done: Mon Nov 7 22:45:53 2016 Total Scan time: 1.830 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]