Result of FASTA (omim) for pFN21AE1035
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE1035, 428 aa
  1>>>pF1KE1035 428 - 428 aa - 428 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3307+/-0.000407; mu= 17.7082+/- 0.025
 mean_var=69.7180+/-13.921, 0's: 0 Z-trim(111.2): 165  B-trim: 42 in 3/51
 Lambda= 0.153604
 statistics sampled from 19547 (19721) to 19547 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.582), E-opt: 0.2 (0.231), width:  16
 Scan time:  8.600

The best scores are:                                      opt bits E(85289)
NP_542165 (OMIM: 142560) spliceosome RNA helicase  ( 428) 2817 633.6 2.9e-181
NP_004631 (OMIM: 142560) spliceosome RNA helicase  ( 428) 2817 633.6 2.9e-181
NP_001958 (OMIM: 601102) eukaryotic initiation fac ( 407)  888 206.1 1.3e-52
NP_055555 (OMIM: 268305,608546) eukaryotic initiat ( 411)  884 205.2 2.5e-52
NP_001407 (OMIM: 602641) eukaryotic initiation fac ( 406)  874 203.0 1.1e-51
NP_001244120 (OMIM: 600326) probable ATP-dependent ( 483)  838 195.1 3.3e-49
NP_004388 (OMIM: 600326) probable ATP-dependent RN ( 483)  838 195.1 3.3e-49
XP_005271474 (OMIM: 600326) PREDICTED: probable AT ( 483)  838 195.1 3.3e-49
NP_009135 (OMIM: 606168) probable ATP-dependent RN ( 824)  782 182.8 2.8e-45
NP_057439 (OMIM: 615428) probable ATP-dependent RN ( 455)  732 171.6 3.7e-42
NP_009173 (OMIM: 605812) ATP-dependent RNA helicas ( 479)  724 169.8 1.3e-41
XP_011521136 (OMIM: 605812) PREDICTED: ATP-depende ( 484)  724 169.8 1.3e-41
XP_011521134 (OMIM: 605812) PREDICTED: ATP-depende ( 539)  724 169.8 1.5e-41
NP_060365 (OMIM: 616621) probable ATP-dependent RN ( 796)  688 162.0 5.1e-39
NP_001014449 (OMIM: 605812) ATP-dependent RNA heli ( 370)  676 159.1 1.7e-38
XP_016878379 (OMIM: 605812) PREDICTED: ATP-depende ( 370)  676 159.1 1.7e-38
XP_006721190 (OMIM: 605812) PREDICTED: ATP-depende ( 370)  676 159.1 1.7e-38
NP_001244102 (OMIM: 605812) ATP-dependent RNA heli ( 370)  676 159.1 1.7e-38
NP_001244103 (OMIM: 605812) ATP-dependent RNA heli ( 370)  676 159.1 1.7e-38
XP_011523824 (OMIM: 268305,608546) PREDICTED: euka ( 390)  670 157.8 4.5e-38
NP_001191439 (OMIM: 602641) eukaryotic initiation  ( 347)  660 155.5 1.9e-37
NP_001014451 (OMIM: 605812) ATP-dependent RNA heli ( 448)  644 152.1 2.7e-36
NP_001244101 (OMIM: 605812) ATP-dependent RNA heli ( 453)  644 152.1 2.8e-36
XP_011541093 (OMIM: 607663) PREDICTED: ATP-depende ( 482)  644 152.1 2.9e-36
NP_037396 (OMIM: 607663) ATP-dependent RNA helicas ( 483)  644 152.1 2.9e-36
XP_011541092 (OMIM: 607663) PREDICTED: ATP-depende ( 486)  644 152.1 2.9e-36
XP_011521135 (OMIM: 605812) PREDICTED: ATP-depende ( 508)  644 152.1   3e-36
XP_011508337 (OMIM: 174300,615464) PREDICTED: prob ( 619)  640 151.3 6.6e-36
XP_016857920 (OMIM: 174300,615464) PREDICTED: prob ( 619)  640 151.3 6.6e-36
NP_001026895 (OMIM: 174300,615464) probable ATP-de ( 619)  640 151.3 6.6e-36
XP_016857921 (OMIM: 174300,615464) PREDICTED: prob ( 619)  640 151.3 6.6e-36
NP_001317367 (OMIM: 607663) ATP-dependent RNA heli ( 369)  600 142.3   2e-33
XP_016866492 (OMIM: 606286) PREDICTED: probable AT ( 439)  588 139.7 1.5e-32
XP_011534230 (OMIM: 606286) PREDICTED: probable AT ( 529)  588 139.7 1.7e-32
XP_011534229 (OMIM: 606286) PREDICTED: probable AT ( 529)  588 139.7 1.7e-32
XP_011534228 (OMIM: 606286) PREDICTED: probable AT ( 604)  588 139.7 1.9e-32
NP_061135 (OMIM: 606286) probable ATP-dependent RN ( 648)  588 139.8   2e-32
XP_016879601 (OMIM: 613369) PREDICTED: ATP-depende ( 775)  578 137.6 1.1e-31
NP_031398 (OMIM: 613369) ATP-dependent RNA helicas ( 938)  578 137.6 1.3e-31
NP_987095 (OMIM: 613369) ATP-dependent RNA helicas ( 938)  578 137.6 1.3e-31
XP_016879600 (OMIM: 613369) PREDICTED: ATP-depende ( 938)  578 137.6 1.3e-31
XP_006721720 (OMIM: 613369) PREDICTED: ATP-depende ( 938)  578 137.6 1.3e-31
XP_011540947 (OMIM: 600326) PREDICTED: probable AT ( 434)  572 136.1 1.7e-31
NP_001244104 (OMIM: 605812) ATP-dependent RNA heli ( 328)  569 135.4 2.1e-31
NP_076977 (OMIM: 611665) ATP-dependent RNA helicas ( 881)  570 135.8 4.1e-31
NP_001104792 (OMIM: 611665) ATP-dependent RNA heli ( 882)  570 135.8 4.1e-31
NP_006377 (OMIM: 608469) probable ATP-dependent RN ( 729)  566 134.9 6.5e-31
NP_001091974 (OMIM: 608469) probable ATP-dependent ( 731)  566 134.9 6.5e-31
XP_011522561 (OMIM: 613369) PREDICTED: ATP-depende ( 674)  557 132.9 2.4e-30
NP_001307526 (OMIM: 180630) probable ATP-dependent ( 614)  546 130.4 1.2e-29


>>NP_542165 (OMIM: 142560) spliceosome RNA helicase DDX3  (428 aa)
 initn: 2817 init1: 2817 opt: 2817  Z-score: 3375.3  bits: 633.6 E(85289): 2.9e-181
Smith-Waterman score: 2817; 100.0% identity (100.0% similar) in 428 aa overlap (1-428:1-428)

               10        20        30        40        50        60
pF1KE1 MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_542 NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
              370       380       390       400       410       420

               
pF1KE1 SSYIEQTR
       ::::::::
NP_542 SSYIEQTR
               

>>NP_004631 (OMIM: 142560) spliceosome RNA helicase DDX3  (428 aa)
 initn: 2817 init1: 2817 opt: 2817  Z-score: 3375.3  bits: 633.6 E(85289): 2.9e-181
Smith-Waterman score: 2817; 100.0% identity (100.0% similar) in 428 aa overlap (1-428:1-428)

               10        20        30        40        50        60
pF1KE1 MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE1 VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE1 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE1 RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE1 KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRC
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE1 IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 IALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE1 NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 NYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDI
              370       380       390       400       410       420

               
pF1KE1 SSYIEQTR
       ::::::::
NP_004 SSYIEQTR
               

>>NP_001958 (OMIM: 601102) eukaryotic initiation factor   (407 aa)
 initn: 798 init1: 411 opt: 888  Z-score: 1065.4  bits: 206.1 E(85289): 1.3e-52
Smith-Waterman score: 888; 38.9% identity (73.0% similar) in 370 aa overlap (47-415:35-400)

         20        30        40        50        60        70      
pF1KE1 EVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECI
                                     : :. ::  :::.:   :::.:: .:.. :
NP_001 SADYNREHGGPEGMDPDGVIESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAI
           10        20        30        40        50        60    

         80        90       100       110       120       130      
pF1KE1 PQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF
          : :.::. ::.:: ::::.:... :::::    ....::.  ::::: ::.:    .
NP_001 IPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILAL
           70        80        90       100       110       120    

        140       150       160       170       180       190      
pF1KE1 SKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD
       . :: ..   . .:: ..... . :. . ::::::::::.. .   . :. : :: :.::
NP_001 GDYM-GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLD
           130       140       150       160       170       180   

        200       210       220       230       240       250      
pF1KE1 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETK
       : :.:: .  .. .. :::.      ::...:::.  ..  : .:::.::..:.:  : .
NP_001 EADEMLSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE-E
           190        200       210       220       230       240  

        260       270        280       290       300       310     
pF1KE1 LTLHGLQQYYVKLKDNE-KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAI
       :::.:..:.:.... .: :   : :: ..: ..:.:::... ..   :.. .  ..: . 
NP_001 LTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVS
             250       260       270       280       290       300 

         320       330       340       350       360       370     
pF1KE1 AIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRV
       :.:  : :.::   ...:.. . :.:..:.:..::.:...:....:::.: . ..:.::.
NP_001 ALHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRI
             310       320       330       340       350       360 

         380       390       400       410       420        
pF1KE1 ARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
       .:.:::: ::.::.::..: : .:: :..  ..... :.:             
NP_001 GRGGRFGRKGVAINFVTEE-DKRILRDIETFYNTTVEEMPMNVADLI      
             370       380        390       400             

>>NP_055555 (OMIM: 268305,608546) eukaryotic initiation   (411 aa)
 initn: 766 init1: 408 opt: 884  Z-score: 1060.5  bits: 205.2 E(85289): 2.5e-52
Smith-Waterman score: 884; 38.1% identity (73.0% similar) in 370 aa overlap (47-415:40-404)

         20        30        40        50        60        70      
pF1KE1 EVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECI
                                     :  . :. .:::.:   :::.:: .:.. :
NP_055 SGSARKRLLKEEDMTKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAI
      10        20        30        40        50        60         

         80        90       100       110       120       130      
pF1KE1 PQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF
        : : : ::. :..:: ::::.: ...:: :.  . ....:..  ::::: ::.:    .
NP_055 KQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLAL
      70        80        90       100       110       120         

        140       150       160       170       180       190      
pF1KE1 SKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILD
       . :: ::.  . .:: .. .: . :  .  :.:.:::::.. . : .::  . :: ..::
NP_055 GDYM-NVQCHACIGGTNVGEDIRKLDYG-QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLD
     130        140       150        160       170       180       

        200       210       220       230       240       250      
pF1KE1 ECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETK
       : :.::..  ..... ...:. :   ::...:::: .::  .  ::: ::..:.:  . .
NP_055 EADEMLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-E
       190        200       210       220       230       240      

        260       270        280       290       300       310     
pF1KE1 LTLHGLQQYYVKLKDNE-KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAI
       :::.:..:..: .. .: :   : :: :.: ..:.::: .. ..   :.. . : :: . 
NP_055 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
         250       260       270       280       290       300     

         320       330       340       350       360       370     
pF1KE1 AIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRV
       ..:  :::.:: : ...:..   :.:..:....::.:. .:.. .:::.:.. . :.::.
NP_055 SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
         310       320       330       340       350       360     

         380       390       400       410       420        
pF1KE1 ARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR
       .:.::.: ::.::.::... : .:: :... . ..:.:.:             
NP_055 GRSGRYGRKGVAINFVKND-DIRILRDIEQYYSTQIDEMPMNVADLI      
         370       380        390       400       410       

>>NP_001407 (OMIM: 602641) eukaryotic initiation factor   (406 aa)
 initn: 780 init1: 405 opt: 874  Z-score: 1048.6  bits: 203.0 E(85289): 1.1e-51
Smith-Waterman score: 874; 37.1% identity (72.3% similar) in 394 aa overlap (23-415:13-399)

               10        20        30        40        50        60
pF1KE1 MAENDVDNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAI
                             : :: : : .  .....  : .: : :. :.  :::.:
NP_001           MSASQDSRSRDNGPDGME-P-EGVIESNWNEIVDS-FDDMNLSESLLRGI
                         10          20        30         40       

               70        80        90       100       110       120
pF1KE1 VDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMC
          :::.:: .:.. :   : :.::. ::.:: ::::.:... :::.:     ...::. 
NP_001 YAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLA
        50        60        70        80        90       100       

              130       140       150       160       170       180
pF1KE1 HTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA
        ::::: ::.:    .. :: ...  . .:: ... . . :. . :::.::::::.. . 
NP_001 PTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDML
       110       120        130       140       150       160      

              190       200       210       220       230       240
pF1KE1 RNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR
         . :. :.:: :.::: :.:: .  .. .. .::.    . ::...:::. ...  : .
NP_001 NRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTK
        170       180       190        200       210       220     

              250       260       270        280       290         
pF1KE1 KFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE-KNRKLFDLLDVLEFNQVVIFVKSVQR
       :::.::..:.:  : .:::.:..:.:.... .: :   : :: ..: ..:.:::... ..
NP_001 KFMRDPIRILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRK
         230        240       250       260       270       280    

     300       310       320       330       340       350         
pF1KE1 CIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIA
          :.. .  ..: . :.:  : :.::   ...:.. . :.:..:.:..::.:...:...
NP_001 VDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLV
          290       300       310       320       330       340    

     360       370       380       390       400       410         
pF1KE1 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEID
       .:::.: . ..:.::..:.:::: ::.::..:..: : . : :..  ....: :.:    
NP_001 INYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE-DKRTLRDIETFYNTSIEEMPLNVA
          350       360       370        380       390       400   

     420        
pF1KE1 ISSYIEQTR
                
NP_001 DLI      
                

>>NP_001244120 (OMIM: 600326) probable ATP-dependent RNA  (483 aa)
 initn: 723 init1: 349 opt: 838  Z-score: 1004.4  bits: 195.1 E(85289): 3.3e-49
Smith-Waterman score: 838; 34.7% identity (67.8% similar) in 429 aa overlap (4-426:49-472)

                                          10        20        30   
pF1KE1                            MAENDVDNELLDYEDDEVETAAGGDGAEAPAK-
                                     : ..:   .  .. . :   ::  .   : 
NP_001 GQLRGPVKPTGGPGGGGTQTQQQMNQLKNTNTINNGTQQQAQSMTTTIKPGDDWKKTLKL
       20        30        40        50        60        70        

                 40         50        60        70        80       
pF1KE1 --KD--VKGSYV-SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC
         ::  .: : : : ... :.:. :: ::: .: . :.:.:: .:.: :: :. : :.: 
NP_001 PPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILA
       80        90       100       110       120       130        

        90       100       110       120       130       140       
pF1KE1 QAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV
       .::.: ::......  :..:.    .....:.  :::::.:.:.   . ::.: ..:: .
NP_001 RAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMA
      140       150       160       170       180       190        

       150       160       170       180       190       200       
pF1KE1 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDM
         :: ... :   :  .  :.:..:::::: : ..   .. :.. ..::: ::.: : :.
NP_001 TTGGTNLRDDIMRLD-DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-DF
      200       210        220       230       240       250       

       210       220       230       240       250       260       
pF1KE1 RRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYV
        . ...:.   :...:....:::.   ..    . .: :.:: . .:  :::.:. :::.
NP_001 VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYA
        260       270       280       290       300         310    

       270       280       290       300       310       320       
pF1KE1 KLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERL
        . . .: . :  :.. :..:: .:: .: ::   ::. . . ..  . ::  : ::.: 
NP_001 YVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRN
          320       330       340       350       360       370    

       330       340       350       360       370       380       
pF1KE1 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA
         ...:..   : :: :.:: ::.::. ::...:.:.:. ..:::::..:.::::  :::
NP_001 RVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLA
          380       390       400       410       420       430    

       390       400       410       420                 
pF1KE1 ITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR         
       :....  .:   :....... ..:. .:..:: : :. .           
NP_001 INLIT-YDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEKP
           440       450       460       470       480   

>>NP_004388 (OMIM: 600326) probable ATP-dependent RNA he  (483 aa)
 initn: 723 init1: 349 opt: 838  Z-score: 1004.4  bits: 195.1 E(85289): 3.3e-49
Smith-Waterman score: 838; 34.7% identity (67.8% similar) in 429 aa overlap (4-426:49-472)

                                          10        20        30   
pF1KE1                            MAENDVDNELLDYEDDEVETAAGGDGAEAPAK-
                                     : ..:   .  .. . :   ::  .   : 
NP_004 GQLRGPVKPTGGPGGGGTQTQQQMNQLKNTNTINNGTQQQAQSMTTTIKPGDDWKKTLKL
       20        30        40        50        60        70        

                 40         50        60        70        80       
pF1KE1 --KD--VKGSYV-SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC
         ::  .: : : : ... :.:. :: ::: .: . :.:.:: .:.: :: :. : :.: 
NP_004 PPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILA
       80        90       100       110       120       130        

        90       100       110       120       130       140       
pF1KE1 QAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV
       .::.: ::......  :..:.    .....:.  :::::.:.:.   . ::.: ..:: .
NP_004 RAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMA
      140       150       160       170       180       190        

       150       160       170       180       190       200       
pF1KE1 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDM
         :: ... :   :  .  :.:..:::::: : ..   .. :.. ..::: ::.: : :.
NP_004 TTGGTNLRDDIMRLD-DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-DF
      200       210        220       230       240       250       

       210       220       230       240       250       260       
pF1KE1 RRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYV
        . ...:.   :...:....:::.   ..    . .: :.:: . .:  :::.:. :::.
NP_004 VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYA
        260       270       280       290       300         310    

       270       280       290       300       310       320       
pF1KE1 KLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERL
        . . .: . :  :.. :..:: .:: .: ::   ::. . . ..  . ::  : ::.: 
NP_004 YVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRN
          320       330       340       350       360       370    

       330       340       350       360       370       380       
pF1KE1 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA
         ...:..   : :: :.:: ::.::. ::...:.:.:. ..:::::..:.::::  :::
NP_004 RVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLA
          380       390       400       410       420       430    

       390       400       410       420                 
pF1KE1 ITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR         
       :....  .:   :....... ..:. .:..:: : :. .           
NP_004 INLIT-YDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEKP
           440       450       460       470       480   

>>XP_005271474 (OMIM: 600326) PREDICTED: probable ATP-de  (483 aa)
 initn: 723 init1: 349 opt: 838  Z-score: 1004.4  bits: 195.1 E(85289): 3.3e-49
Smith-Waterman score: 838; 34.7% identity (67.8% similar) in 429 aa overlap (4-426:49-472)

                                          10        20        30   
pF1KE1                            MAENDVDNELLDYEDDEVETAAGGDGAEAPAK-
                                     : ..:   .  .. . :   ::  .   : 
XP_005 GQLRGPVKPTGGPGGGGTQTQQQMNQLKNTNTINNGTQQQAQSMTTTIKPGDDWKKTLKL
       20        30        40        50        60        70        

                 40         50        60        70        80       
pF1KE1 --KD--VKGSYV-SIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLC
         ::  .: : : : ... :.:. :: ::: .: . :.:.:: .:.: :: :. : :.: 
XP_005 PPKDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILA
       80        90       100       110       120       130        

        90       100       110       120       130       140       
pF1KE1 QAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAV
       .::.: ::......  :..:.    .....:.  :::::.:.:.   . ::.: ..:: .
XP_005 RAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMA
      140       150       160       170       180       190        

       150       160       170       180       190       200       
pF1KE1 FFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDM
         :: ... :   :  .  :.:..:::::: : ..   .. :.. ..::: ::.: : :.
XP_005 TTGGTNLRDDIMRLD-DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-DF
      200       210        220       230       240       250       

       210       220       230       240       250       260       
pF1KE1 RRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYV
        . ...:.   :...:....:::.   ..    . .: :.:: . .:  :::.:. :::.
XP_005 VQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--LTLKGVTQYYA
        260       270       280       290       300         310    

       270       280       290       300       310       320       
pF1KE1 KLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERL
        . . .: . :  :.. :..:: .:: .: ::   ::. . . ..  . ::  : ::.: 
XP_005 YVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIHAKMRQEHRN
          320       330       340       350       360       370    

       330       340       350       360       370       380       
pF1KE1 SRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLA
         ...:..   : :: :.:: ::.::. ::...:.:.:. ..:::::..:.::::  :::
XP_005 RVFHDFRNGLCRNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGHLGLA
          380       390       400       410       420       430    

       390       400       410       420                 
pF1KE1 ITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR         
       :....  .:   :....... ..:. .:..:: : :. .           
XP_005 INLIT-YDDRFNLKSIEEQLGTEIKPIPSNIDKSLYVAEYHSEPVEDEKP
           440       450       460       470       480   

>>NP_009135 (OMIM: 606168) probable ATP-dependent RNA he  (824 aa)
 initn: 793 init1: 366 opt: 782  Z-score: 933.9  bits: 182.8 E(85289): 2.8e-45
Smith-Waterman score: 782; 35.2% identity (67.1% similar) in 398 aa overlap (37-426:54-447)

         10        20        30        40        50        60      
pF1KE1 DNELLDYEDDEVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFE
                                     :. .  . . :...::.  .:...   :::
NP_009 AVQVPAPEPTPGPVRILRTAQDLSSPRTRTGDVLLAEPADFESLLLSRPVLEGLRAAGFE
            30        40        50        60        70        80   

         70        80        90       100       110       120      
pF1KE1 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELA
       .:: :: . :: .  :.:.. ::::: ::: ::   .:..:   . ....:..  :::.:
NP_009 RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIA
            90       100       110       120       130       140   

        130       140       150       160       170       180      
pF1KE1 FQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLN
        :: .    ..  : ...  ::.::  ...:.  ::: : ::.::.::::  : .   ::
NP_009 VQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKK-C-HIAVGSPGRIKQLIELDYLN
           150       160       170       180         190       200 

        190       200       210       220       230       240      
pF1KE1 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDP
          :. ::::: ::.::. ....... :.   :  ::..  :::  . .  .  :.:.::
NP_009 PGSIRLFILDEADKLLEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDP
             210       220       230       240       250       260 

        250       260       270               280       290        
pF1KE1 MEIFVDDETKLTLHGLQQYYVKLKD--------NEKNRKLFDLLDVLEFNQVVIFVKSVQ
         . ... .  .: ::.:::  ...        .::...: .:.. . :::...: .  .
NP_009 TFVRLNS-SDPSLIGLKQYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALVFSNLHS
              270       280       290       300       310       320

      300       310       320       330       340       350        
pF1KE1 RCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNI
       :   ::..:  ..:::  :  .: :..::. . ..: :. :.:..:.: .::.: :.::.
NP_009 RAQHLADILSSKGFPAECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNL
              330       340       350       360       370       380

      360       370       380       390       400       410        
pF1KE1 AFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI
       . : :.: : .::.::..::::::: ::..:.    .. ...  . .. ..:.  ::: :
NP_009 VVNLDVPLDWETYMHRIGRAGRFGTLGLTVTYCCRGEEENMMMRIAQKCNINLLPLPDPI
              390       400       410       420       430       440

      420                                                          
pF1KE1 DISSYIEQTR                                                  
         :. .:.                                                    
NP_009 P-SGLMEECVDWDVEVKAAVHTYGIASVPNQPLKKQIQKIERTLQIQKAHGDHMASSRNN
               450       460       470       480       490         

>>NP_057439 (OMIM: 615428) probable ATP-dependent RNA he  (455 aa)
 initn: 714 init1: 304 opt: 732  Z-score: 877.8  bits: 171.6 E(85289): 3.7e-42
Smith-Waterman score: 732; 33.6% identity (70.7% similar) in 375 aa overlap (47-419:26-394)

         20        30        40        50        60        70      
pF1KE1 EVETAAGGDGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECI
                                     :.:. .   : .:  . :. .:...: : :
NP_057      MAAPEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAI
                    10        20        30        40        50     

         80        90       100       110       120       130      
pF1KE1 PQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF
       : :. : :..  :..: :::..:.:  :. :  .  .. .::.  :::::::::...: .
NP_057 PLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEAL
          60        70        80        90       100       110     

        140       150        160       170        180       190    
pF1KE1 SKYMPNVKVAVFFGGL-SIKKDEEVLKKNCPHIVVGTPGRILA-LARNKSLNLKHIKHFI
       .. . .:. ::. ::. :....  . ::  :::...::::..  :  .:..::. .:...
NP_057 GSSI-GVQSAVIVGGIDSMSQSLALAKK--PHIIIATPGRLIDHLENTKGFNLRALKYLV
          120       130       140         150       160       170  

          200       210       220       230       240       250    
pF1KE1 LDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDE
       .:: :..:. .:.. .:..:... :.......::::..:... . :  ...:..  :...
NP_057 MDEADRILN-MDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSK
            180        190       200       210       220       230 

          260       270       280       290       300       310    
pF1KE1 TKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPA
        . :.. :::::. . .. :.  :  .:. :  :. .:: .. .     : :: . .: :
NP_057 YQ-TVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTA
              240       250       260       270       280       290

          320       330       340       350       360       370    
pF1KE1 IAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR
       : .:  : : .::.  ..::   : ::.::.. .::.:: .:... :.:.:  :  :.::
NP_057 IPLHGQMSQSKRLGSLNKFKAKARSILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHR
              300       310       320       330       340       350

          380       390       400       410       420              
pF1KE1 VARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIEQTR      
       :.:..: : .: :::::. . :..... ..  .  ..  .: . :               
NP_057 VGRTARAGRSGKAITFVT-QYDVELFQRIEHLIGKKLPGFPTQDDEVMMLTERVAEAQRF
              360        370       380       390       400         

NP_057 ARMELREHGEKKKRSREDAGDNDDTEGAIGVRNKVAGGKMKKRKGR
     410       420       430       440       450     




428 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 13:29:58 2016 done: Sat Nov  5 13:29:59 2016
 Total Scan time:  8.600 Total Display time:  0.080

Function used was FASTA [36.3.4 Apr, 2011]
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