Result of FASTA (ccds) for pFN21AE2547
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE2547, 464 aa
  1>>>pF1KE2547 464 - 464 aa - 464 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.4484+/-0.000947; mu= 1.6942+/- 0.058
 mean_var=299.2428+/-61.654, 0's: 0 Z-trim(114.9): 24  B-trim: 156 in 1/53
 Lambda= 0.074142
 statistics sampled from 15468 (15483) to 15468 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.476), width:  16
 Scan time:  3.740

The best scores are:                                      opt bits E(32554)
CCDS6668.1 HNRNPK gene_id:3190|Hs108|chr9          ( 464) 3189 354.3 1.5e-97
CCDS6667.1 HNRNPK gene_id:3190|Hs108|chr9          ( 463) 3150 350.2 2.7e-96


>>CCDS6668.1 HNRNPK gene_id:3190|Hs108|chr9               (464 aa)
 initn: 3189 init1: 3189 opt: 3189  Z-score: 1864.8  bits: 354.3 E(32554): 1.5e-97
Smith-Waterman score: 3189; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464)

               10        20        30        40        50        60
pF1KE2 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
              370       380       390       400       410       420

              430       440       450       460    
pF1KE2 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
              430       440       450       460    

>>CCDS6667.1 HNRNPK gene_id:3190|Hs108|chr9               (463 aa)
 initn: 3228 init1: 3150 opt: 3150  Z-score: 1842.2  bits: 350.2 E(32554): 2.7e-96
Smith-Waterman score: 3150; 99.8% identity (100.0% similar) in 459 aa overlap (1-459:1-459)

               10        20        30        40        50        60
pF1KE2 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE2 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE2 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE2 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE2 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE2 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE2 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
              370       380       390       400       410       420

              430       440       450       460    
pF1KE2 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
       ::::::::::::::::::::::::::::::::::::::.     
CCDS66 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF 
              430       440       450       460    




464 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 03:53:29 2016 done: Tue Nov  8 03:53:29 2016
 Total Scan time:  3.740 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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