FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE6244, 278 aa 1>>>pF1KE6244 278 - 278 aa - 278 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.3597+/-0.00086; mu= 13.9938+/- 0.051 mean_var=57.9973+/-11.924, 0's: 0 Z-trim(105.0): 25 B-trim: 0 in 0/50 Lambda= 0.168411 statistics sampled from 8195 (8208) to 8195 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.252), width: 16 Scan time: 2.180 The best scores are: opt bits E(32554) CCDS7003.1 AGPAT2 gene_id:10555|Hs108|chr9 ( 278) 1822 451.0 4.3e-127 CCDS35181.1 AGPAT2 gene_id:10555|Hs108|chr9 ( 246) 1092 273.6 9.5e-74 CCDS4744.1 AGPAT1 gene_id:10554|Hs108|chr6 ( 283) 832 210.5 1.1e-54 >>CCDS7003.1 AGPAT2 gene_id:10555|Hs108|chr9 (278 aa) initn: 1822 init1: 1822 opt: 1822 Z-score: 2395.2 bits: 451.0 E(32554): 4.3e-127 Smith-Waterman score: 1822; 99.6% identity (99.6% similar) in 278 aa overlap (1-278:1-278) 10 20 30 40 50 60 pF1KE6 MELWPCLAAALLLLLLLVQLSRAAEFYAKVALYCALCFTVSAVASLVCLLRHGGRTVENM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS70 MELWPCLAAALLLLLLLVQLSRAAEFYAKVALYCALCFTVSAVASLVCLLRHGGRTVENM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SIIGWFVRSFKYFYGLRFEVRDPRRLQEARPCVIVSNHQSILDMMGLMEVLPERCVQIAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS70 SIIGWFVRSFKYFYGLRFEVRDPRRLQEARPCVIVSNHQSILDMMGLMEVLPERCVQIAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 RELLFLGPVGLIMYLGGVFFINRQRSSTAMTVMADLGERMVRENLKVWIYPEGTRNDNGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS70 RELLFLGPVGLIMYLGGVFFINRQRSSTAMTVMADLGERMVRENLKVWIYPEGTRNDNGD 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE6 LLPFKKGAFYLAVQAQVPIFPVVYSSFSSFYNTKKKFFTSGTVTVQVLEAIPTSGLTAAD ::::::::::::::::::: :::::::::::::::::::::::::::::::::::::::: CCDS70 LLPFKKGAFYLAVQAQVPIVPVVYSSFSSFYNTKKKFFTSGTVTVQVLEAIPTSGLTAAD 190 200 210 220 230 240 250 260 270 pF1KE6 VPALVDTCHRAMRTTFLHISKTPQENGATAGSGVQPAQ :::::::::::::::::::::::::::::::::::::: CCDS70 VPALVDTCHRAMRTTFLHISKTPQENGATAGSGVQPAQ 250 260 270 >>CCDS35181.1 AGPAT2 gene_id:10555|Hs108|chr9 (246 aa) initn: 1106 init1: 1087 opt: 1092 Z-score: 1437.5 bits: 273.6 E(32554): 9.5e-74 Smith-Waterman score: 1527; 88.1% identity (88.1% similar) in 278 aa overlap (1-278:1-246) 10 20 30 40 50 60 pF1KE6 MELWPCLAAALLLLLLLVQLSRAAEFYAKVALYCALCFTVSAVASLVCLLRHGGRTVENM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 MELWPCLAAALLLLLLLVQLSRAAEFYAKVALYCALCFTVSAVASLVCLLRHGGRTVENM 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE6 SIIGWFVRSFKYFYGLRFEVRDPRRLQEARPCVIVSNHQSILDMMGLMEVLPERCVQIAK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS35 SIIGWFVRSFKYFYGLRFEVRDPRRLQEARPCVIVSNHQSILDMMGLMEVLPERCVQIAK 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE6 RELLFLGPVGLIMYLGGVFFINRQRSSTAMTVMADLGERMVRENLKVWIYPEGTRNDNGD :::::::::::::::::::::::::::::::::::::::::::: CCDS35 RELLFLGPVGLIMYLGGVFFINRQRSSTAMTVMADLGERMVREN---------------- 130 140 150 160 190 200 210 220 230 240 pF1KE6 LLPFKKGAFYLAVQAQVPIFPVVYSSFSSFYNTKKKFFTSGTVTVQVLEAIPTSGLTAAD ::: :::::::::::::::::::::::::::::::::::::::: CCDS35 ----------------VPIVPVVYSSFSSFYNTKKKFFTSGTVTVQVLEAIPTSGLTAAD 170 180 190 200 250 260 270 pF1KE6 VPALVDTCHRAMRTTFLHISKTPQENGATAGSGVQPAQ :::::::::::::::::::::::::::::::::::::: CCDS35 VPALVDTCHRAMRTTFLHISKTPQENGATAGSGVQPAQ 210 220 230 240 >>CCDS4744.1 AGPAT1 gene_id:10554|Hs108|chr6 (283 aa) initn: 851 init1: 758 opt: 832 Z-score: 1095.1 bits: 210.5 E(32554): 1.1e-54 Smith-Waterman score: 832; 47.3% identity (76.0% similar) in 275 aa overlap (1-267:1-273) 10 20 30 40 50 pF1KE6 MELWPCLAAALLLLLLLVQL--------SRAAEFYAKVALYCALCFTVSAVASLVCLLRH :.::: ::::.::. . : .:... :.:.: . . ....: :: .: CCDS47 MDLWPGAWMLLLLLFLLLLFLLPTLWFCSPSAKYFFKMAFYNGWILFLAVLAIPVCAVR- 10 20 30 40 50 60 70 80 90 100 110 pF1KE6 GGRTVENMSIIGWFVRSFKYFYGLRFEVRDPRRLQEARPCVIVSNHQSILDMMGLMEVLP ::.::::.:. .. .::.::.: ::: ... ..: :.:::::: ::..:.::::: CCDS47 -GRNVENMKILRLMLLHIKYLYGIRVEVRGAHHFPPSQPYVVVSNHQSSLDLLGMMEVLP 60 70 80 90 100 110 120 130 140 150 160 170 pF1KE6 ERCVQIAKRELLFLGPVGLIMYLGGVFFINRQRSSTAMTVMADLGERMVRENLKVWIYPE ::: :::::::. : .:: .:.::.::.:.:.. :..::..... .. ....::..:: CCDS47 GRCVPIAKRELLWAGSAGLACWLAGVIFIDRKRTGDAISVMSEVAQTLLTQDVRVWVFPE 120 130 140 150 160 170 180 190 200 210 220 230 pF1KE6 GTRNDNGDLLPFKKGAFYLAVQAQVPIFPVVYSSFSSFYNTKKKFFTSGTVTVQVLEAIP :::: ::..::::.:::.::::::::: :.:.::...:: :.. :::: :.:: .: CCDS47 GTRNHNGSMLPFKRGAFHLAVQAQVPIVPIVMSSYQDFYCKKERRFTSGQCQVRVLPPVP 180 190 200 210 220 230 240 250 260 270 pF1KE6 TSGLTAADVPALVDTCHRAMRTTFLHISKTPQENGATAGSGVQPAQ : ::: :::::.: ...: :.: .:: . .: CCDS47 TEGLTPDDVPALADRVRHSMLTVFREISTDGRGGGDYLKKPGGGG 240 250 260 270 280 278 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Tue Nov 8 11:24:35 2016 done: Tue Nov 8 11:24:35 2016 Total Scan time: 2.180 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]