Restriction map for
pFN21AE0419
(Circular) (Six-base) MAPSORT of: pFN21AE0419.seq Check: 4007 from: 1 to: 5188
pFN21AE0419 5188 bp
With 182 enzymes: SgfI *
October 20, 2009 10:47 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 2998 278
Size: 53 83 186 936 1462 2468
Fragments arranged by size:
2468 1462 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2531 1937
Size: 594 4594
Acc65I G'GTAC_C
Cuts at: 2509 2509
Size: 5188
AclI AA'CG_TT
Cuts at: 1563 3315 3688 1563
Size: 1752 373 3063
Fragments arranged by size:
3063 1752 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3251 4635 4903 1632
Size: 1619 1384 268 1917
Fragments arranged by size:
1917 1619 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 4991
AflIII A'CryG_T
Cuts at: 1203 2310 2312 4087 5064 1203
Size: 1107 2 1775 977 1327
Fragments arranged by size:
1775 1327 1107 977 2
AgeI A'CCGG_T
Cuts at: 4019 4019
Size: 5188
AhdI GACnn_n'nnGTC
Cuts at: 3917 3917
Size: 5188
AleI CACnn'nnGTG
Cuts at: 1166 1166
Size: 5188
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 2423 1184
Size: 1239 3949
AlwNI CAG_nnn'CTG
Cuts at: 2931 4503 2931
Size: 1572 3616
ApaLI G'TGCA_C
Cuts at: 2316 3245 4401 2316
Size: 929 1156 3103
Fragments arranged by size:
3103 1156 929
ApoI r'AATT_y
Cuts at: 1493 2497 2723 2875 4984 1493
Size: 1004 226 152 2109 1697
Fragments arranged by size:
2109 1697 1004 226 152
AseI AT'TA_AT
Cuts at: 160 1032 3742 160
Size: 872 2710 1606
Fragments arranged by size:
2710 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5188
AvaI C'yCGr_G
Cuts at: 1870 1943 2055 2513 1870
Size: 73 112 458 4545
Fragments arranged by size:
4545 458 112 73
BamHI G'GATC_C
Cuts at: 2518 2885 2518
Size: 367 4821
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2209 2303 2509 3964 618
Size: 325 217 627 422 94 206 1455 1842
Fragments arranged by size:
1842 1455 627 422 325 217 206 94
BanII G_rGCy'C
Cuts at: 1391 2507 1391
Size: 1116 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4217
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3379 3413 1903
Size: 34 1442 34 3678
Fragments arranged by size:
3678 1442 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3080 4290 3080
Size: 1210 3978
BclI T'GATC_A
Cuts at: 1548 1548
Size: 5188
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 3799 136
Size: 107 122 71 631 605 2127 1525
Fragments arranged by size:
2127 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5183 5183
Size: 5188
BlpI GC'TnA_GC
Cuts at: 2605 2605
Size: 5188
Bme1580I G_kGCm'C
Cuts at: 1790 2306 2320 3249 4405 1790
Size: 516 14 929 1156 2573
Fragments arranged by size:
2573 1156 929 516 14
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5188
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 2919 3877 442
Size: 416 53 83 399 24 1502 958 1753
Fragments arranged by size:
1753 1502 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5188
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 2447 3848 1239
Size: 1208 1401 2579
Fragments arranged by size:
2579 1401 1208
Bpu10I CC'TnA_GC
Cuts at: 2214 2214
Size: 5188
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 3313 4178 4476 3313
Size: 865 298 4025
Fragments arranged by size:
4025 865 298
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 2056 3851 882
Size: 617 557 1795 2219
Fragments arranged by size:
2219 1795 617 557
BsaAI yAC'GTr
Cuts at: 493 1204 2188 2313 2979 493
Size: 711 984 125 666 2702
Fragments arranged by size:
2702 984 711 666 125
BsaBI GATnn'nnATC
Cuts at: 5182 5182
Size: 5188
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 2995 3377 4012 275
Size: 53 83 186 936 1462 382 635 1451
Fragments arranged by size:
1462 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3621 4019 4293 4440 4851 3621
Size: 398 274 147 411 3958
Fragments arranged by size:
3958 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 4963
Fragments arranged by size:
4963 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 2341 2450 1186
Size: 1155 109 3924
Fragments arranged by size:
3924 1155 109
BseYI C'CCAG_C
Cuts at: 4391 4887 4391
Size: 496 4692
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4615
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2638 3399 4427 1540
Size: 275 186 637 761 1028 2301
Fragments arranged by size:
2301 1028 761 637 275 186
BsiHKAI G_wGCw'C
Cuts at: 2193 2220 2320 2373 3249 3334 4405 2193
Size: 27 100 53 876 85 1071 2976
Fragments arranged by size:
2976 1071 876 100 85 53 27
BsmI GAATG_Cn'
Cuts at: 2699 2792 2699
Size: 93 5095
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2193 2220 2306 2320 2373 2507 3249
Size: 399 403 27 86 14 53 134 742
Cuts at: 3249 3334 4405 1391
Size: 85 1071 2174
Fragments arranged by size:
2174 1071 742 403 399 134 86 85
53 27 14
BspEI T'CCGG_A
Cuts at: 4851 4851
Size: 5188
BspHI T'CATG_A
Cuts at: 3077 4807 3077
Size: 1730 3458
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2038 2543 844
Size: 1194 505 3489
Fragments arranged by size:
3489 1194 505
BsrBI CCG'CTC
Cuts at: 1394 1823 2229 3075 1394
Size: 429 406 846 3507
Fragments arranged by size:
3507 846 429 406
BsrDI GCAATG_nn'
Cuts at: 65 1248 3683 3857 65
Size: 1183 2435 174 1396
Fragments arranged by size:
2435 1396 1183 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 3832 4019 1700
Size: 110 2022 187 2869
Fragments arranged by size:
2869 2022 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5188
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5188
BssSI C'ACGA_G
Cuts at: 2425 3248 4260 2425
Size: 823 1012 3353
Fragments arranged by size:
3353 1012 823
BstAPI GCAn_nnn'nTGC
Cuts at: 794 794
Size: 5188
BstBI TT'CG_AA
Cuts at: 3992 3992
Size: 5188
BstEII G'GTnAC_C
Cuts at: 1184 2068 1184
Size: 884 4304
BstXI CCAn_nnnn'nTGG
Cuts at: 2011 2330 2011
Size: 319 4869
BstYI r'GATC_y
Cuts at: 1972 2518 2885 3270 3287 4739 4825 4837 5183
Size: 546 367 385 17 1452 86 12 346
Cuts at: 5183 1972
Size: 1977
Fragments arranged by size:
1977 1452 546 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2469 513
Size: 552 1404 3232
Fragments arranged by size:
3232 1404 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 2008 487
Size: 683 56 782 3667
Fragments arranged by size:
3667 782 683 56
BtsI GCAGTG_nn'
Cuts at: 2704 3498 3518 2704
Size: 794 20 4374
Fragments arranged by size:
4374 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5188
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5153
DraI TTT'AAA
Cuts at: 2492 2492
Size: 5188
DraIII CAC_nnn'GTG
Cuts at: 2427 2427
Size: 5188
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 2384 4195 809
Size: 507 1068 1811 1802
Fragments arranged by size:
1811 1802 1068 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2013 2332 2635
Size: 54 1425 50 275 18 183 319 303
Cuts at: 2635 3524 5153 8
Size: 889 1629 43
Fragments arranged by size:
1629 1425 889 319 303 275 183 54
50 43 18
EagI C'GGCC_G
Cuts at: 1537 1812 2635 1537
Size: 275 823 4090
Fragments arranged by size:
4090 823 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3118 1353
Size: 1765 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 2269 3775 4149 4295 387
Size: 1064 138 680 1506 374 146 1280
Fragments arranged by size:
1506 1280 1064 680 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 2447 3251 3848 4635 4903 1239
Size: 393 815 804 597 787 268 1524
Fragments arranged by size:
1524 815 804 787 597 393 268
EcoNI CCTnn'n_nnAGG
Cuts at: 2462 2462
Size: 5188
EcoO109I rG'GnC_Cy
Cuts at: 2266 2266
Size: 5188
EcoRI G'AATT_C
Cuts at: 2497 2875 2497
Size: 378 4810
FspI TGC'GCA
Cuts at: 3694 3694
Size: 5188
HaeII r_GCGC'y
Cuts at: 1678 4335 1678
Size: 2657 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2092 2124 2465 2497 3829
Size: 32 135 32 520 32 341 32 1332
Cuts at: 3829 3861 3903 3935 1373
Size: 32 42 32 2626
Fragments arranged by size:
2626 1332 520 341 135 42 32 32
32 32 32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2532 2778 669
Size: 988 281 594 246 3079
Fragments arranged by size:
3079 988 594 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5188
HpaI GTT'AAC
Cuts at: 2778 2778
Size: 5188
KpnI G_GTAC'C
Cuts at: 2513 2513
Size: 5188
MfeI C'AATT_G
Cuts at: 2787 2787
Size: 5188
MluI A'CGCG_T
Cuts at: 5064 5064
Size: 5188
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 4302 4486 1305
Size: 2997 184 2007
Fragments arranged by size:
2997 2007 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 2015 2334 10
Size: 54 1425 343 183 319 2864
Fragments arranged by size:
2864 1425 343 319 183 54
MslI CAynn'nnrTG
Cuts at: 518 1166 3146 3505 3664 518
Size: 648 1980 359 159 2042
Fragments arranged by size:
2042 1980 648 359 159
MspA1I CmG'CkG
Cuts at: 1606 2604 3281 4429 4674 1606
Size: 998 677 1148 245 2120
Fragments arranged by size:
2120 1148 998 677 245
NcoI C'CATG_G
Cuts at: 513 1065 513
Size: 552 4636
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5188
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5188
NotI GC'GGCC_GC
Cuts at: 2635 2635
Size: 5188
NspI r_CATG'y
Cuts at: 1132 1229 2546 4091 1132
Size: 97 1317 1545 2229
Fragments arranged by size:
2229 1545 1317 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5188
PciI A'CATG_T
Cuts at: 4087 4087
Size: 5188
PflMI CCAn_nnn'nTGG
Cuts at: 1108 1108
Size: 5188
PmeI GTTT'AAAC
Cuts at: 2492 2492
Size: 5188
PmlI CAC'GTG
Cuts at: 2188 2313 2188
Size: 125 5063
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3257 3289 4770 4802 3257
Size: 32 1481 32 3643
Fragments arranged by size:
3643 1481 32 32
PpuMI rG'GwC_Cy
Cuts at: 2266 2266
Size: 5188
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5188
PsiI TTA'TAA
Cuts at: 2758 2758
Size: 5188
PstI C_TGCA'G
Cuts at: 830 2540 830
Size: 1710 3478
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5188
SalI G'TCGA_C
Cuts at: 1936 2530 1936
Size: 594 4594
SbfI CC_TGCA'GG
Cuts at: 2540 2540
Size: 5188
ScaI AGT'ACT
Cuts at: 3436 5148 3436
Size: 1712 3476
SfcI C'TryA_G
Cuts at: 826 1045 2536 3671 4352 4543 826
Size: 219 1491 1135 681 191 1471
Fragments arranged by size:
1491 1471 1135 681 219 191
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5188
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5188
SmaI CCC'GGG
Cuts at: 1872 2515 1872
Size: 643 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 3292 4193 4455 820
Size: 197 926 1349 901 262 1553
Fragments arranged by size:
1553 1349 926 901 262 197
SnaBI TAC'GTA
Cuts at: 493 2979 493
Size: 2486 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5188
SphI G_CATG'C
Cuts at: 1132 2546 1132
Size: 1414 3774
SspI AAT'ATT
Cuts at: 5 52 3112 5
Size: 47 3060 2081
Fragments arranged by size:
3060 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5188
StyI C'CwwG_G
Cuts at: 513 1065 2627 513
Size: 552 1562 3074
Fragments arranged by size:
3074 1562 552
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 2158 2359 3215 3232 3385 3570 4015
Size: 1255 578 201 856 17 153 185 445
Cuts at: 4015 325
Size: 1498
Fragments arranged by size:
1498 1255 856 578 445 201 185 153
17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3434 5146 96
Size: 274 80 33 51 1443 1457 1712 138
Fragments arranged by size:
1712 1457 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 5148 5180 5148
Size: 32 5156
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5188
XbaI T'CTAG_A
Cuts at: 2524 2524
Size: 5188
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5188
XmaI C'CCGG_G
Cuts at: 1870 2513 1870
Size: 643 4545
XmnI GAAnn'nnTTC
Cuts at: 3317 3317
Size: 5188
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 2996 276
Size: 53 83 186 936 1462 2468
Fragments arranged by size:
2468 1462 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BamHI BanI BanII BbsI BcgI BciVI BclI
BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI
Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI
ClaI CspCI DraI DraIII DrdI EaeI EagI EarI
EciI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I
HincII HindIII HpaI KpnI MfeI MluI MmeI MscI
MslI MspA1I NcoI NdeI NheI NotI NspI PasI
PciI PflMI PmeI PmlI PpiI PpuMI PshAI PsiI
PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI
SmaI SmlI SnaBI SpeI SphI SspI StuI StyI
TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI
ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BaeI BbeI
BbvCI BfrBI BplI BsiWI BsmBI BstZ17I Bsu36I EcoICRI
EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV
NruI NsiI PacI PfoI PspOMI PspXI PsrI PvuII
RsrII SacI SacII SanDI SapI SexAI SfiI SfoI
SrfI SwaI XcmI