(Circular) (Six-base) MAPSORT of: pFN21AE0101.seq Check: 5297 from: 1 to: 5251 pFN21AE0101 5251 bp With 182 enzymes: SgfI * October 20, 2009 10:44 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3061 278 Size: 53 83 186 936 1525 2468 Fragments arranged by size: 2468 1525 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2594 1937 Size: 657 4594 Acc65I G'GTAC_C Cuts at: 2572 2572 Size: 5251 AclI AA'CG_TT Cuts at: 1563 3378 3751 1563 Size: 1815 373 3063 Fragments arranged by size: 3063 1815 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3314 4698 4966 1632 Size: 1682 1384 268 1917 Fragments arranged by size: 1917 1682 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5054 AflIII A'CryG_T Cuts at: 1203 4150 5127 1203 Size: 2947 977 1327 Fragments arranged by size: 2947 1327 977 AgeI A'CCGG_T Cuts at: 2043 4082 2043 Size: 2039 3212 AhdI GACnn_n'nnGTC Cuts at: 3980 3980 Size: 5251 AleI CACnn'nnGTG Cuts at: 1166 2044 2492 1166 Size: 878 448 3925 Fragments arranged by size: 3925 878 448 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2072 1184 Size: 888 4363 AlwNI CAG_nnn'CTG Cuts at: 2405 2994 4566 2405 Size: 589 1572 3090 Fragments arranged by size: 3090 1572 589 ApaLI G'TGCA_C Cuts at: 3308 4464 3308 Size: 1156 4095 ApoI r'AATT_y Cuts at: 1493 2066 2094 2384 2560 2786 2938 5047 1493 Size: 573 28 290 176 226 152 2109 1697 Fragments arranged by size: 2109 1697 573 290 226 176 152 28 AseI AT'TA_AT Cuts at: 160 1032 2394 3805 160 Size: 872 1362 1411 1606 Fragments arranged by size: 1606 1411 1362 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5251 AvaI C'yCGr_G Cuts at: 1870 1943 2341 2576 1870 Size: 73 398 235 4545 Fragments arranged by size: 4545 398 235 73 BamHI G'GATC_C Cuts at: 2581 2948 2581 Size: 367 4884 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2083 2572 4027 618 Size: 325 217 627 296 489 1455 1842 Fragments arranged by size: 1842 1455 627 489 325 296 217 BanII G_rGCy'C Cuts at: 1391 2570 1391 Size: 1179 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4280 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3442 3476 1903 Size: 34 1505 34 3678 Fragments arranged by size: 3678 1505 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3143 4353 3143 Size: 1210 4041 BclI T'GATC_A Cuts at: 1548 1548 Size: 5251 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2414 3862 136 Size: 107 122 71 631 605 742 1448 1525 Fragments arranged by size: 1525 1448 742 631 605 122 107 71 BglII A'GATC_T Cuts at: 2026 5246 2026 Size: 3220 2031 BlpI GC'TnA_GC Cuts at: 2299 2668 2299 Size: 369 4882 Bme1580I G_kGCm'C Cuts at: 1790 3312 4468 1790 Size: 1522 1156 2573 Fragments arranged by size: 2573 1522 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5251 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2421 2982 3940 Size: 416 53 83 399 24 1004 561 958 Cuts at: 3940 442 Size: 1753 Fragments arranged by size: 1753 1004 958 561 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5251 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 3911 1239 Size: 2672 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2135 3376 4241 4539 2135 Size: 1241 865 298 2847 Fragments arranged by size: 2847 1241 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3914 882 Size: 617 2415 2219 Fragments arranged by size: 2415 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3042 493 Size: 711 1838 2702 Fragments arranged by size: 2702 1838 711 BsaBI GATnn'nnATC Cuts at: 2199 2465 5245 2199 Size: 266 2780 2205 Fragments arranged by size: 2780 2205 266 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3058 3440 4075 275 Size: 53 83 186 936 1525 382 635 1451 Fragments arranged by size: 1525 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2043 3684 4082 4356 4503 4914 2043 Size: 1641 398 274 147 411 2380 Fragments arranged by size: 2380 1641 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2502 2532 1178 Size: 30 165 30 1099 30 3897 Fragments arranged by size: 3897 1099 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2199 1186 Size: 1013 4238 BseYI C'CCAG_C Cuts at: 4454 4950 4454 Size: 496 4755 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2015 2095 1163 Size: 573 279 80 4319 Fragments arranged by size: 4319 573 279 80 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2701 3462 4490 1540 Size: 275 186 700 761 1028 2301 Fragments arranged by size: 2301 1028 761 700 275 186 BsiHKAI G_wGCw'C Cuts at: 3312 3397 4468 3312 Size: 85 1071 4095 Fragments arranged by size: 4095 1071 85 BsmI GAATG_Cn' Cuts at: 2762 2855 2762 Size: 93 5158 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2570 3312 3397 4468 1391 Size: 399 780 742 85 1071 2174 Fragments arranged by size: 2174 1071 780 742 399 85 BspEI T'CCGG_A Cuts at: 4914 4914 Size: 5251 BspHI T'CATG_A Cuts at: 3140 4870 3140 Size: 1730 3521 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2606 844 Size: 1762 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3138 1394 Size: 429 1315 3507 Fragments arranged by size: 3507 1315 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3746 3920 65 Size: 1183 2498 174 1396 Fragments arranged by size: 2498 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2043 3895 4082 1700 Size: 110 233 1852 187 2869 Fragments arranged by size: 2869 1852 233 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5251 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5251 BssSI C'ACGA_G Cuts at: 3311 4323 3311 Size: 1012 4239 BstAPI GCAn_nnn'nTGC Cuts at: 794 2423 794 Size: 1629 3622 BstBI TT'CG_AA Cuts at: 4055 4055 Size: 5251 BstEII G'GTnAC_C Cuts at: 1184 2485 1184 Size: 1301 3950 BstYI r'GATC_y Cuts at: 1972 2026 2581 2948 3333 3350 4802 4888 4900 Size: 54 555 367 385 17 1452 86 12 Cuts at: 4900 5246 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 555 385 367 346 86 54 17 12 BtgI C'CryG_G Cuts at: 513 1065 2260 2279 513 Size: 552 1195 19 3485 Fragments arranged by size: 3485 1195 552 19 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4512 Fragments arranged by size: 4512 683 56 BtsI GCAGTG_nn' Cuts at: 2767 3561 3581 2767 Size: 794 20 4437 Fragments arranged by size: 4437 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5251 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5216 DraI TTT'AAA Cuts at: 2555 2555 Size: 5251 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4258 809 Size: 507 2942 1802 Fragments arranged by size: 2942 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2292 2698 3587 Size: 54 1425 50 275 18 462 406 889 Cuts at: 3587 5216 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 462 406 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2698 1537 Size: 275 886 4090 Fragments arranged by size: 4090 886 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3181 1353 Size: 1828 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3838 4212 4358 387 Size: 1064 138 2249 374 146 1280 Fragments arranged by size: 2249 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 3314 3911 4698 4966 1239 Size: 393 1682 597 787 268 1524 Fragments arranged by size: 1682 1524 787 597 393 268 EcoRI G'AATT_C Cuts at: 2560 2938 2560 Size: 378 4873 EcoRV GAT'ATC Cuts at: 2467 2467 Size: 5251 FspI TGC'GCA Cuts at: 3757 3757 Size: 5251 HaeII r_GCGC'y Cuts at: 1678 4398 1678 Size: 2720 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3892 3924 3966 3998 1373 Size: 32 135 32 2320 32 42 32 2626 Fragments arranged by size: 2626 2320 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2595 2841 669 Size: 988 281 657 246 3079 Fragments arranged by size: 3079 988 657 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5251 HpaI GTT'AAC Cuts at: 2841 2841 Size: 5251 KpnI G_GTAC'C Cuts at: 2576 2576 Size: 5251 MfeI C'AATT_G Cuts at: 2850 2850 Size: 5251 MluI A'CGCG_T Cuts at: 5127 5127 Size: 5251 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2215 4365 4549 1305 Size: 910 2150 184 2007 Fragments arranged by size: 2150 2007 910 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2294 10 Size: 54 1425 343 462 2967 Fragments arranged by size: 2967 1425 462 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2009 2044 2492 3209 3568 3727 518 Size: 648 843 35 448 717 359 159 2042 Fragments arranged by size: 2042 843 717 648 448 359 159 35 MspA1I CmG'CkG Cuts at: 1606 2667 3344 4492 4737 1606 Size: 1061 677 1148 245 2120 Fragments arranged by size: 2120 1148 1061 677 245 NcoI C'CATG_G Cuts at: 513 1065 2260 2279 513 Size: 552 1195 19 3485 Fragments arranged by size: 3485 1195 552 19 NdeI CA'TA_TG Cuts at: 387 387 Size: 5251 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5251 NotI GC'GGCC_GC Cuts at: 2698 2698 Size: 5251 NspI r_CATG'y Cuts at: 1132 1229 2609 4154 1132 Size: 97 1380 1545 2229 Fragments arranged by size: 2229 1545 1380 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5251 PciI A'CATG_T Cuts at: 4150 4150 Size: 5251 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5251 PmeI GTTT'AAAC Cuts at: 2555 2555 Size: 5251 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3320 3352 4833 4865 3320 Size: 32 1481 32 3706 Fragments arranged by size: 3706 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5251 PsiI TTA'TAA Cuts at: 2821 2821 Size: 5251 PstI C_TGCA'G Cuts at: 830 2603 830 Size: 1773 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5251 SalI G'TCGA_C Cuts at: 1936 2593 1936 Size: 657 4594 SbfI CC_TGCA'GG Cuts at: 2603 2603 Size: 5251 ScaI AGT'ACT Cuts at: 3499 5211 3499 Size: 1712 3539 SfcI C'TryA_G Cuts at: 826 1045 2478 2599 3734 4415 4606 826 Size: 219 1433 121 1135 681 191 1471 Fragments arranged by size: 1471 1433 1135 681 219 191 121 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5251 SgrAI Cr'CCGG_yG Cuts at: 1700 2043 1700 Size: 343 4908 SmaI CCC'GGG Cuts at: 1872 2578 1872 Size: 706 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2150 3355 4256 4518 820 Size: 197 926 207 1205 901 262 1553 Fragments arranged by size: 1553 1205 926 901 262 207 197 SnaBI TAC'GTA Cuts at: 493 3042 493 Size: 2549 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5251 SphI G_CATG'C Cuts at: 1132 2609 1132 Size: 1477 3774 SspI AAT'ATT Cuts at: 5 52 3175 5 Size: 47 3123 2081 Fragments arranged by size: 3123 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5251 StyI C'CwwG_G Cuts at: 513 1065 2260 2279 2427 2690 513 Size: 552 1195 19 148 263 3074 Fragments arranged by size: 3074 1195 552 263 148 19 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3278 3295 3448 3633 4078 325 Size: 1255 1698 17 153 185 445 1498 Fragments arranged by size: 1698 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3497 5209 96 Size: 274 80 33 51 1443 1520 1712 138 Fragments arranged by size: 1712 1520 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2502 2534 5211 5243 2502 Size: 32 2677 32 2510 Fragments arranged by size: 2677 2510 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5251 XbaI T'CTAG_A Cuts at: 2587 2587 Size: 5251 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2011 2011 Size: 5251 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5251 XmaI C'CCGG_G Cuts at: 1870 2576 1870 Size: 706 4545 XmnI GAAnn'nnTTC Cuts at: 3380 3380 Size: 5251 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3059 276 Size: 53 83 186 936 1525 2468 Fragments arranged by size: 2468 1525 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI EcoRV FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI