Result of FASTA (omim) for
pFN21AE0197
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0197, 119 aa
1>>>pF1KE0197 119 - 119 aa - 119 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0065+/-0.000296; mu= 13.5212+/- 0.019
mean_var=77.2840+/-14.637, 0's: 0 Z-trim(118.4): 42 B-trim: 177 in 1/53
Lambda= 0.145891
statistics sampled from 31194 (31236) to 31194 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.736), E-opt: 0.2 (0.366), width: 16
Scan time: 4.780
The best scores are: opt bits E(85289)
NP_001029058 (OMIM: 600835,609423) stromal cell-de ( 119) 782 172.8 1.2e-43
NP_954637 (OMIM: 600835,609423) stromal cell-deriv ( 89) 592 132.7 1e-31
NP_000600 (OMIM: 600835,609423) stromal cell-deriv ( 93) 592 132.7 1.1e-31
NP_001171605 (OMIM: 600835,609423) stromal cell-de ( 140) 594 133.3 1.1e-31
NP_001264919 (OMIM: 600835,609423) stromal cell-de ( 103) 255 61.8 2.6e-10
NP_000575 (OMIM: 146930) interleukin-8 precursor [ ( 99) 164 42.6 0.00015
NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 p ( 125) 158 41.5 0.00042
NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 p ( 107) 153 40.4 0.00077
NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 p ( 107) 152 40.1 0.0009
NP_002976 (OMIM: 187011) C-C motif chemokine 5 iso ( 91) 147 39.0 0.0017
NP_002984 (OMIM: 138965) C-X-C motif chemokine 6 p ( 114) 142 38.1 0.004
NP_001502 (OMIM: 155730) growth-regulated alpha pr ( 107) 140 37.6 0.0052
>>NP_001029058 (OMIM: 600835,609423) stromal cell-derive (119 aa)
initn: 782 init1: 782 opt: 782 Z-score: 904.8 bits: 172.8 E(85289): 1.2e-43
Smith-Waterman score: 782; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)
10 20 30 40 50 60
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
70 80 90 100 110
>>NP_954637 (OMIM: 600835,609423) stromal cell-derived f (89 aa)
initn: 592 init1: 592 opt: 592 Z-score: 690.3 bits: 132.7 E(85289): 1e-31
Smith-Waterman score: 592; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
:::::::::::::::::::::::::::::
NP_954 ARLKNNNRQVCIDPKLKWIQEYLEKALNK
70 80
>>NP_000600 (OMIM: 600835,609423) stromal cell-derived f (93 aa)
initn: 592 init1: 592 opt: 592 Z-score: 690.0 bits: 132.7 E(85289): 1.1e-31
Smith-Waterman score: 592; 100.0% identity (100.0% similar) in 89 aa overlap (1-89:1-89)
10 20 30 40 50 60
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
:::::::::::::::::::::::::::::
NP_000 ARLKNNNRQVCIDPKLKWIQEYLEKALNKRFKM
70 80 90
>>NP_001171605 (OMIM: 600835,609423) stromal cell-derive (140 aa)
initn: 627 init1: 591 opt: 594 Z-score: 690.0 bits: 133.3 E(85289): 1.1e-31
Smith-Waterman score: 594; 86.7% identity (90.5% similar) in 105 aa overlap (1-105:1-105)
10 20 30 40 50 60
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
::::::::::::::::::::::::::::. .::. : .
NP_001 ARLKNNNRQVCIDPKLKWIQEYLEKALNNLISAAPAGKRVIAGARALHPSPPRACPTARA
70 80 90 100 110 120
NP_001 LCEIRLWPPPEWSWPSPGDV
130 140
>>NP_001264919 (OMIM: 600835,609423) stromal cell-derive (103 aa)
initn: 265 init1: 255 opt: 255 Z-score: 306.1 bits: 61.8 E(85289): 2.6e-10
Smith-Waterman score: 255; 100.0% identity (100.0% similar) in 38 aa overlap (1-38:1-38)
10 20 30 40 50 60
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHLKILNTPNCALQIV
::::::::::::::::::::::::::::::::::::::
NP_001 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHYCTCLIRVSFHGATPLTQGSWV
10 20 30 40 50 60
70 80 90 100 110
pF1KE0 ARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQKRKN
NP_001 LYSLSCAGGETGLREPGPMVSPRVESHQEGRLGVPGPVNLGKA
70 80 90 100
>>NP_000575 (OMIM: 146930) interleukin-8 precursor [Homo (99 aa)
initn: 138 init1: 95 opt: 164 Z-score: 202.8 bits: 42.6 E(85289): 0.00015
Smith-Waterman score: 164; 31.2% identity (69.8% similar) in 96 aa overlap (1-89:1-95)
10 20 30 40 50
pF1KE0 MNAKVVVVLV---LVLTALCLSDGKPVSLS-YRCPC-RFFESHVARANVKHLKILNT-PN
:..:..:.:. :. .::: . : : . :: : . . . .:.:..... :.
NP_000 MTSKLAVALLAAFLISAALCEGAVLPRSAKELRCQCIKTYSKPFHPKFIKELRVIESGPH
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 CA-LQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKA
:: .:...: ...:..:.::: .:.:. .:: :..
NP_000 CANTEIIVKL-SDGRELCLDPKENWVQRVVEKFLKRAENS
70 80 90
pF1KE0 AQKRKN
>>NP_002407 (OMIM: 601704) C-X-C motif chemokine 9 precu (125 aa)
initn: 146 init1: 52 opt: 158 Z-score: 194.7 bits: 41.5 E(85289): 0.00042
Smith-Waterman score: 158; 30.8% identity (62.5% similar) in 120 aa overlap (5-118:6-121)
10 20 30 40 50
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPC-RFFESHVARANVKHLKILN-TPNCA-
:. .: ..: .: .: :: . :: : .. . ..: :: . .:.:
NP_002 MKKSGVLFLLGIILLVLIGVQGTPVVRKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEK
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE0 LQIVARLKNNNRQVCIDPKLKWIQEYL---EKALNKGRREEKVGKKEKIGKKKRQKKRKA
..:.: :::. :.:..: ..: . :: ... ....: :::.. ::: : ::.
NP_002 IEIIATLKNGV-QTCLNPDSADVKELIKKWEKQVSQ-KKKQKNGKKHQ--KKKVLKVRKS
70 80 90 100 110
pF1KE0 AQKRKN
..:.
NP_002 QRSRQKKTT
120
>>NP_002081 (OMIM: 139111) C-X-C motif chemokine 3 precu (107 aa)
initn: 133 init1: 103 opt: 153 Z-score: 189.9 bits: 40.4 E(85289): 0.00077
Smith-Waterman score: 153; 29.2% identity (62.9% similar) in 89 aa overlap (4-90:17-104)
10 20 30 40
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHL
.:...:.:...: . : : :: : . . :.. .
NP_002 MAHATLSAAPSNPRLLRVALLLLLLVAASRRAAGASVVTELRCQCLQTLQGIHLKNIQSV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 KILNT-PNCA-LQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKK
.. . :.:: ...: :::. ...:..: .:. .:: ::::
NP_002 NVRSPGPHCAQTEVIATLKNG-KKACLNPASPMVQKIIEKILNKGSTN
70 80 90 100
110
pF1KE0 KRQKKRKAAQKRKN
>>NP_002080 (OMIM: 139110) C-X-C motif chemokine 2 precu (107 aa)
initn: 93 init1: 75 opt: 152 Z-score: 188.7 bits: 40.1 E(85289): 0.0009
Smith-Waterman score: 152; 26.7% identity (65.6% similar) in 90 aa overlap (4-91:17-105)
10 20 30 40
pF1KE0 MNAKVVVVLVLVLTALCLSDGKPVSLSYRCPCRFFESHVARANVKHL
.:...:.:...: . : :.. :: : . . :.. .
NP_002 MARATLSAAPSNPRLLRVALLLLLLVAASRRAAGAPLATELRCQCLQTLQGIHLKNIQSV
10 20 30 40 50 60
50 60 70 80 90 100
pF1KE0 KILNT-PNCA-LQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKK
:. . :.:: ...: :::. ...:..: ... .:: :..:.
NP_002 KVKSPGPHCAQTEVIATLKNG-QKACLNPASPMVKKIIEKMLKNGKSN
70 80 90 100
110
pF1KE0 KRQKKRKAAQKRKN
>>NP_002976 (OMIM: 187011) C-C motif chemokine 5 isoform (91 aa)
initn: 116 init1: 90 opt: 147 Z-score: 184.0 bits: 39.0 E(85289): 0.0017
Smith-Waterman score: 147; 33.3% identity (66.7% similar) in 81 aa overlap (7-83:8-85)
10 20 30 40 50
pF1KE0 MNAKVVVVLVLVLTALCL-SDGKPVSLSYRCPCRFFESHVARANVK-HLK--ILNTPNC
....:. :::: ....: : : :: : ...:: . :.: . .. .:
NP_002 MKVSAAALAVILIATALCAPASASPYS-SDTTPCCF--AYIARPLPRAHIKEYFYTSGKC
10 20 30 40 50
60 70 80 90 100 110
pF1KE0 ALQIVARLKNNNRQVCIDPKLKWIQEYLEKALNKGRREEKVGKKEKIGKKKRQKKRKAAQ
. :. . .::::: .:. ::..::.
NP_002 SNPAVVFVTRKNRQVCANPEKKWVREYINSLEMS
60 70 80 90
119 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 01:21:06 2016 done: Sat Nov 5 01:21:07 2016
Total Scan time: 4.780 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]