(Linear) (Six-base) MAPSORT of: KIAA0045.seq Check: 8491 from: 1 to: 5976 KIAA0045.orf With 182 enzymes: SgfI * March 22, 2012 15:29 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 174 948 5976 Size: 174 774 5028 Fragments arranged by size: 5028 774 174 AccI GT'mk_AC Cuts at: 0 1053 3071 4101 5316 5976 Size: 1053 2018 1030 1215 660 Fragments arranged by size: 2018 1215 1053 1030 660 AclI AA'CG_TT Cuts at: 0 3306 5976 Size: 3306 2670 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 146 268 1064 1088 1348 1450 1701 2641 Size: 146 122 796 24 260 102 251 940 Cuts at: 2641 2692 2707 2745 2858 3343 4130 5431 5545 Size: 51 15 38 113 485 787 1301 114 Cuts at: 5545 5976 Size: 431 Fragments arranged by size: 1301 940 796 787 485 431 260 251 146 122 114 113 102 51 38 24 15 AflII C'TTAA_G Cuts at: 0 5887 5976 Size: 5887 89 AhdI GACnn_n'nnGTC Cuts at: 0 2557 5976 Size: 2557 3419 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 1776 5976 Size: 1776 4200 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 444 476 5976 Size: 444 32 5500 Fragments arranged by size: 5500 444 32 AlwNI CAG_nnn'CTG Cuts at: 0 1075 1147 1392 2554 5025 5976 Size: 1075 72 245 1162 2471 951 Fragments arranged by size: 2471 1162 1075 951 245 72 ApaI G_GGCC'C Cuts at: 0 69 5976 Size: 69 5907 ApoI r'AATT_y Cuts at: 0 775 1098 1711 1786 1911 2720 3295 3775 Size: 775 323 613 75 125 809 575 480 Cuts at: 3775 4005 4504 5976 Size: 230 499 1472 Fragments arranged by size: 1472 809 775 613 575 499 480 323 230 125 75 AseI AT'TA_AT Cuts at: 0 5107 5976 Size: 5107 869 AvaI C'yCGr_G Cuts at: 0 206 2456 5976 Size: 206 2250 3520 Fragments arranged by size: 3520 2250 206 BamHI G'GATC_C Cuts at: 0 141 2478 2854 2863 5976 Size: 141 2337 376 9 3113 Fragments arranged by size: 3113 2337 376 141 9 BanI G'GyrC_C Cuts at: 0 186 655 2110 5976 Size: 186 469 1455 3866 Fragments arranged by size: 3866 1455 469 186 BanII G_rGCy'C Cuts at: 0 69 950 991 3608 4257 5976 Size: 69 881 41 2617 649 1719 Fragments arranged by size: 2617 1719 881 649 69 41 BbsI GAAGACnn'nnnn_ Cuts at: 0 608 836 1222 3950 4400 5264 5535 5976 Size: 608 228 386 2728 450 864 271 441 Fragments arranged by size: 2728 864 608 450 441 386 271 228 BbvCI CC'TCA_GC Cuts at: 0 552 2544 3676 5976 Size: 552 1992 1132 2300 Fragments arranged by size: 2300 1992 1132 552 BciVI GTATCCnnnnn_n' Cuts at: 0 3231 5976 Size: 3231 2745 BclI T'GATC_A Cuts at: 0 5655 5976 Size: 5655 321 BfrBI ATG'CAT Cuts at: 0 1741 2781 5326 5976 Size: 1741 1040 2545 650 Fragments arranged by size: 2545 1741 1040 650 BglI GCCn_nnn'nGGC Cuts at: 0 3033 5976 Size: 3033 2943 BglII A'GATC_T Cuts at: 0 511 1938 2964 5364 5976 Size: 511 1427 1026 2400 612 Fragments arranged by size: 2400 1427 1026 612 511 BlpI GC'TnA_GC Cuts at: 0 944 5976 Size: 944 5032 Bme1580I G_kGCm'C Cuts at: 0 69 4330 5487 5976 Size: 69 4261 1157 489 Fragments arranged by size: 4261 1157 489 69 BmrI ACTGGGnnnn_n' Cuts at: 0 947 1426 5221 5976 Size: 947 479 3795 755 Fragments arranged by size: 3795 947 755 479 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 0 4163 5976 Size: 4163 1813 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1903 3379 3617 4915 5002 5728 5976 Size: 1903 1476 238 1298 87 726 248 Fragments arranged by size: 1903 1476 1298 726 248 238 87 Bpu10I CC'TnA_GC Cuts at: 0 552 2544 3676 5976 Size: 552 1992 1132 2300 Fragments arranged by size: 2300 1992 1132 552 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 2147 2960 4715 5976 Size: 2147 813 1755 1261 Fragments arranged by size: 2147 1755 1261 813 BsaAI yAC'GTr Cuts at: 0 2380 5976 Size: 2380 3596 BsaBI GATnn'nnATC Cuts at: 0 2853 5535 5976 Size: 2853 2682 441 Fragments arranged by size: 2853 2682 441 BsaWI w'CCGG_w Cuts at: 0 2481 5786 5976 Size: 2481 3305 190 Fragments arranged by size: 3305 2481 190 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 237 267 282 312 1630 1644 1660 1674 Size: 237 30 15 30 1318 14 16 14 Cuts at: 1674 3377 3407 5976 Size: 1703 30 2569 Fragments arranged by size: 2569 1703 1318 237 30 30 30 16 15 14 14 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 224 600 627 1049 1423 1921 4801 5470 Size: 224 376 27 422 374 498 2880 669 Cuts at: 5470 5976 Size: 506 Fragments arranged by size: 2880 669 506 498 422 376 374 224 27 BseYI C'CCAG_C Cuts at: 0 562 718 1316 2932 5976 Size: 562 156 598 1616 3044 Fragments arranged by size: 3044 1616 598 562 156 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 356 521 5976 Size: 356 165 5455 Fragments arranged by size: 5455 356 165 BsiHKAI G_wGCw'C Cuts at: 0 950 970 1478 2463 2706 5976 Size: 950 20 508 985 243 3270 Fragments arranged by size: 3270 985 950 508 243 20 BsmI GAATG_Cn' Cuts at: 0 5647 5976 Size: 5647 329 Bsp1286I G_dGCh'C Cuts at: 0 69 950 970 991 1478 2463 2706 3608 Size: 69 881 20 21 487 985 243 902 Cuts at: 3608 4257 4330 5487 5976 Size: 649 73 1157 489 Fragments arranged by size: 1157 985 902 881 649 489 487 243 73 69 21 20 BspEI T'CCGG_A Cuts at: 0 2481 5786 5976 Size: 2481 3305 190 Fragments arranged by size: 3305 2481 190 BspHI T'CATG_A Cuts at: 0 4565 5670 5976 Size: 4565 1105 306 Fragments arranged by size: 4565 1105 306 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 174 948 1914 2562 4618 5976 Size: 174 774 966 648 2056 1358 Fragments arranged by size: 2056 1358 966 774 648 174 BsrDI GCAATG_nn' Cuts at: 0 1813 2078 2657 4481 4688 5976 Size: 1813 265 579 1824 207 1288 Fragments arranged by size: 1824 1813 1288 579 265 207 BsrFI r'CCGG_y Cuts at: 0 8 5976 Size: 8 5968 BstAPI GCAn_nnn'nTGC Cuts at: 0 2554 3199 3501 5976 Size: 2554 645 302 2475 Fragments arranged by size: 2554 2475 645 302 BstXI CCAn_nnnn'nTGG Cuts at: 0 3146 3403 3481 5976 Size: 3146 257 78 2495 Fragments arranged by size: 3146 2495 257 78 BstYI r'GATC_y Cuts at: 0 141 511 1938 2478 2854 2863 2964 4551 Size: 141 370 1427 540 376 9 101 1587 Cuts at: 4551 5364 5976 Size: 813 612 Fragments arranged by size: 1587 1427 813 612 540 376 370 141 101 9 BstZ17I GTA'TAC Cuts at: 0 4102 5976 Size: 4102 1874 BtgI C'CryG_G Cuts at: 0 983 2858 5976 Size: 983 1875 3118 Fragments arranged by size: 3118 1875 983 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 3965 5976 Size: 3965 2011 BtsI GCAGTG_nn' Cuts at: 0 34 56 228 933 2296 2889 3847 5976 Size: 34 22 172 705 1363 593 958 2129 Fragments arranged by size: 2129 1363 958 705 593 172 34 22 DraI TTT'AAA Cuts at: 0 3773 5976 Size: 3773 2203 DraIII CAC_nnn'GTG Cuts at: 0 655 5976 Size: 655 5321 EaeI y'GGCC_r Cuts at: 0 5111 5976 Size: 5111 865 EarI CTCTTCn'nnn_ Cuts at: 0 331 403 500 774 839 2760 3596 3609 Size: 331 72 97 274 65 1921 836 13 Cuts at: 3609 3918 4245 5976 Size: 309 327 1731 Fragments arranged by size: 1921 1731 836 331 327 309 274 97 72 65 13 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 978 4819 5976 Size: 978 3841 1157 Fragments arranged by size: 3841 1157 978 EcoICRI GAG'CTC Cuts at: 0 948 5976 Size: 948 5028 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 146 268 1064 1088 1348 1450 1701 1903 Size: 146 122 796 24 260 102 251 202 Cuts at: 1903 2641 2692 2707 2745 2858 3343 3379 3617 Size: 738 51 15 38 113 485 36 238 Cuts at: 3617 4130 4915 5002 5431 5545 5728 5976 Size: 513 785 87 429 114 183 248 Fragments arranged by size: 796 785 738 513 485 429 260 251 248 238 202 183 146 122 114 113 102 87 51 38 36 24 15 EcoNI CCTnn'n_nnAGG Cuts at: 0 5043 5777 5976 Size: 5043 734 199 Fragments arranged by size: 5043 734 199 EcoO109I rG'GnC_Cy Cuts at: 0 65 2307 2551 4821 5022 5976 Size: 65 2242 244 2270 201 954 Fragments arranged by size: 2270 2242 954 244 201 65 EcoRI G'AATT_C Cuts at: 0 1711 5976 Size: 1711 4265 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 829 1960 4984 5109 5976 Size: 829 1131 3024 125 867 Fragments arranged by size: 3024 1131 867 829 125 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 237 269 1162 1194 1630 1662 1834 1866 Size: 237 32 893 32 436 32 172 32 Cuts at: 1866 2543 2575 2911 2943 3229 3261 3445 3477 Size: 677 32 336 32 286 32 184 32 Cuts at: 3477 3855 3887 3946 3978 4062 4094 4161 4193 Size: 378 32 59 32 84 32 67 32 Cuts at: 4193 5781 5813 5976 Size: 1588 32 163 Fragments arranged by size: 1588 893 677 436 378 336 286 237 184 172 163 84 67 59 32 32 32 32 32 32 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 0 1054 1357 2819 4523 5976 Size: 1054 303 1462 1704 1453 Fragments arranged by size: 1704 1462 1453 1054 303 HindIII A'AGCT_T Cuts at: 0 1208 3129 5976 Size: 1208 1921 2847 Fragments arranged by size: 2847 1921 1208 HpaI GTT'AAC Cuts at: 0 4523 5976 Size: 4523 1453 MfeI C'AATT_G Cuts at: 0 1289 1748 5810 5976 Size: 1289 459 4062 166 Fragments arranged by size: 4062 1289 459 166 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 29 2063 2071 3194 3253 3498 4291 4519 Size: 29 2034 8 1123 59 245 793 228 Cuts at: 4519 5757 5976 Size: 1238 219 Fragments arranged by size: 2034 1238 1123 793 245 228 219 59 29 8 MscI TGG'CCA Cuts at: 0 5113 5976 Size: 5113 863 MslI CAynn'nnrTG Cuts at: 0 4072 5976 Size: 4072 1904 MspA1I CmG'CkG Cuts at: 0 1042 1108 1962 2899 2917 3498 5976 Size: 1042 66 854 937 18 581 2478 Fragments arranged by size: 2478 1042 937 854 581 66 18 NcoI C'CATG_G Cuts at: 0 2858 5976 Size: 2858 3118 NsiI A_TGCA'T Cuts at: 0 1743 2783 5328 5976 Size: 1743 1040 2545 648 Fragments arranged by size: 2545 1743 1040 648 NspI r_CATG'y Cuts at: 0 2022 2840 4438 5976 Size: 2022 818 1598 1538 Fragments arranged by size: 2022 1598 1538 818 PflMI CCAn_nnn'nTGG Cuts at: 0 3595 5976 Size: 3595 2381 PfoI T'CCnGG_A Cuts at: 0 3594 5976 Size: 3594 2382 PmlI CAC'GTG Cuts at: 0 2380 5976 Size: 2380 3596 PpuMI rG'GwC_Cy Cuts at: 0 2551 4821 5976 Size: 2551 2270 1155 Fragments arranged by size: 2551 2270 1155 PshAI GACnn'nnGTC Cuts at: 0 4940 5812 5976 Size: 4940 872 164 Fragments arranged by size: 4940 872 164 PsiI TTA'TAA Cuts at: 0 2005 5168 5976 Size: 2005 3163 808 Fragments arranged by size: 3163 2005 808 PspOMI G'GGCC_C Cuts at: 0 65 5976 Size: 65 5911 PspXI vC'TCGA_Gb Cuts at: 0 2456 5976 Size: 2456 3520 PstI C_TGCA'G Cuts at: 0 106 1143 2916 4034 5976 Size: 106 1037 1773 1118 1942 Fragments arranged by size: 1942 1773 1118 1037 106 PvuII CAG'CTG Cuts at: 0 1042 1108 1962 2899 2917 3498 5976 Size: 1042 66 854 937 18 581 2478 Fragments arranged by size: 2478 1042 937 854 581 66 18 SacI G_AGCT'C Cuts at: 0 950 5976 Size: 950 5026 SalI G'TCGA_C Cuts at: 0 1052 5976 Size: 1052 4924 SapI GCTCTTCn'nnn_ Cuts at: 0 774 3596 4245 5976 Size: 774 2822 649 1731 Fragments arranged by size: 2822 1731 774 649 ScaI AGT'ACT Cuts at: 0 3043 5566 5976 Size: 3043 2523 410 Fragments arranged by size: 3043 2523 410 SexAI A'CCwGG_T Cuts at: 0 651 5976 Size: 651 5325 SfcI C'TryA_G Cuts at: 0 102 623 1139 1672 2912 4030 4924 5317 Size: 102 521 516 533 1240 1118 894 393 Cuts at: 5317 5646 5976 Size: 329 330 Fragments arranged by size: 1240 1118 894 533 521 516 393 330 329 102 SfiI GGCCn_nnn'nGGCC Cuts at: 0 3033 5976 Size: 3033 2943 SmlI C'TyrA_G Cuts at: 0 206 2162 2456 2975 4730 5887 5976 Size: 206 1956 294 519 1755 1157 89 Fragments arranged by size: 1956 1755 1157 519 294 206 89 SpeI A'CTAG_T Cuts at: 0 2422 4498 5976 Size: 2422 2076 1478 Fragments arranged by size: 2422 2076 1478 StuI AGG'CCT Cuts at: 0 1624 5652 5976 Size: 1624 4028 324 Fragments arranged by size: 4028 1624 324 StyI C'CwwG_G Cuts at: 0 1131 1634 2858 5114 5151 5976 Size: 1131 503 1224 2256 37 825 Fragments arranged by size: 2256 1224 1131 825 503 37 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 554 1995 2946 4691 5976 Size: 554 1441 951 1745 1285 Fragments arranged by size: 1745 1441 1285 951 554 TatI w'GTAC_w Cuts at: 0 3041 3160 3705 5564 5976 Size: 3041 119 545 1859 412 Fragments arranged by size: 3041 1859 545 412 119 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 1262 1294 2647 2679 5976 Size: 1262 32 1353 32 3297 Fragments arranged by size: 3297 1353 1262 32 32 Tth111I GACn'n_nGTC Cuts at: 0 5263 5976 Size: 5263 713 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 1288 3403 3615 5121 5752 5976 Size: 1288 2115 212 1506 631 224 Fragments arranged by size: 2115 1506 1288 631 224 212 XhoI C'TCGA_G Cuts at: 0 206 2456 5976 Size: 206 2250 3520 Fragments arranged by size: 3520 2250 206 XmnI GAAnn'nnTTC Cuts at: 0 1532 2090 3692 4490 5976 Size: 1532 558 1602 798 1486 Fragments arranged by size: 1602 1532 1486 798 558 Enzymes that do cut: AarI AccI AclI AcuI AflII AhdI AlfI AloI AlwNI ApaI ApoI AseI AvaI BamHI BanI BanII BbsI BbvCI BciVI BclI BfrBI BglI BglII BlpI Bme1580I BmrI BplI BpmI Bpu10I BpuEI BsaAI BsaBI BsaWI BsaXI BseRI BseYI BsgI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrDI BsrFI BstAPI BstXI BstYI BstZ17I BtgI BtgZI BtsI DraI DraIII EaeI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRI FalI Hin4I HincII HindIII HpaI MfeI MmeI MscI MslI MspA1I NcoI NsiI NspI PflMI PfoI PmlI PpuMI PshAI PsiI PspOMI PspXI PstI PvuII SacI SalI SapI ScaI SexAI SfcI SfiI SmlI SpeI StuI StyI TaqII TatI TstI Tth111I XcmI XhoI XmnI Enzymes that do not cut: AatII Acc65I AfeI AflIII AgeI AleI ApaLI AscI AsiSI AvrII BaeI BbeI BcgI BmgBI BmtI BsaI BsaHI BsiEI BsiWI BsmBI BsrBI BsrGI BssHII BssSI BstBI BstEII Bsu36I ClaI CspCI DrdI EagI EcoRV FseI FspI FspAI HaeII KasI KpnI MluI NaeI NarI NdeI NgoMIV NheI NotI NruI PacI PasI PciI PmeI PpiI PsrI PvuI RsrII SacII SanDI SbfI SfoI SgfI SgrAI SmaI SnaBI SphI SrfI SspI SwaI XbaI XmaI ZraI