Result of FASTA (ccds) for pFN21AA0898
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KA0898, 964 aa
  1>>>pF1KA0898 964 - 964 aa - 964 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5176+/-0.000943; mu= 11.8352+/- 0.057
 mean_var=146.2698+/-29.740, 0's: 0 Z-trim(109.9): 81  B-trim: 0 in 0/52
 Lambda= 0.106047
 statistics sampled from 11102 (11183) to 11102 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.344), width:  16
 Scan time:  5.010

The best scores are:                                      opt bits E(32554)
CCDS32694.1 TRIM37 gene_id:4591|Hs108|chr17        ( 964) 6419 994.5       0
CCDS45746.1 TRIM37 gene_id:4591|Hs108|chr17        ( 964) 6419 994.5       0
CCDS82174.1 TRIM37 gene_id:4591|Hs108|chr17        ( 930) 6117 948.3       0


>>CCDS32694.1 TRIM37 gene_id:4591|Hs108|chr17             (964 aa)
 initn: 6419 init1: 6419 opt: 6419  Z-score: 5313.3  bits: 994.5 E(32554):    0
Smith-Waterman score: 6419; 100.0% identity (100.0% similar) in 964 aa overlap (1-964:1-964)

               10        20        30        40        50        60
pF1KA0 MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 RELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 GGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 EIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 SSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 LQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNII
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 REFASDFEVGECWGYNRFFRLDLLANEGYLNPQNDTVILRFQVRSPTFFQKSRDQHWYIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 REFASDFEVGECWGYNRFFRLDLLANEGYLNPQNDTVILRFQVRSPTFFQKSRDQHWYIT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 QLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDALETRAKKSACSDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDALETRAKKSACSDM
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 LLEGGPTTASVREAKEDEEDEEKIQNEDYHHELSDGDLDLDLVYEDEVNQLDGSSSSASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LLEGGPTTASVREAKEDEEDEEKIQNEDYHHELSDGDLDLDLVYEDEVNQLDGSSSSASS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 TATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPAGSSHGYVGSSSRISRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPAGSSHGYVGSSSRISRR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 THLCSAATSSLLDIDPLILIHLLDLKDRSSIENLWGLQPRPPASLLQPTASYSRKDKDQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 THLCSAATSSLLDIDPLILIHLLDLKDRSSIENLWGLQPRPPASLLQPTASYSRKDKDQR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 KQQAMWRVPSDLKMLKRLKTQMAEVRCMKTDVKNTLSEIKSSSAASGDMQTSLFSADQAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KQQAMWRVPSDLKMLKRLKTQMAEVRCMKTDVKNTLSEIKSSSAASGDMQTSLFSADQAA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 LAACGTENSGRLQDLGMELLAKSSVANCYIRNSTNKKSNSPKPARSSVAGSLSLRRAVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LAACGTENSGRLQDLGMELLAKSSVANCYIRNSTNKKSNSPKPARSSVAGSLSLRRAVDP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 GENSRSKGDCQTLSEGSPGSSQSGSRHSSPRALIHGSIGDILPKTEDRQCKALDSDAVVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GENSRSKGDCQTLSEGSPGSSQSGSRHSSPRALIHGSIGDILPKTEDRQCKALDSDAVVV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 AVFSGLPAVEKRRKMVTLGANAKGGHLEGLQMTDLENNSETGELQPVLPEGASAAPEEGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 AVFSGLPAVEKRRKMVTLGANAKGGHLEGLQMTDLENNSETGELQPVLPEGASAAPEEGM
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 SSDSDIECDTENEEQEEHTSVGGFHDSFMVMTQPPDEDTHSSFPDGEQIGPEDLSFNTDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SSDSDIECDTENEEQEEHTSVGGFHDSFMVMTQPPDEDTHSSFPDGEQIGPEDLSFNTDE
              910       920       930       940       950       960

           
pF1KA0 NSGR
       ::::
CCDS32 NSGR
           

>>CCDS45746.1 TRIM37 gene_id:4591|Hs108|chr17             (964 aa)
 initn: 6419 init1: 6419 opt: 6419  Z-score: 5313.3  bits: 994.5 E(32554):    0
Smith-Waterman score: 6419; 100.0% identity (100.0% similar) in 964 aa overlap (1-964:1-964)

               10        20        30        40        50        60
pF1KA0 MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MDEQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KA0 RELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 RELVNCRWAEEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KA0 GGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GGMHGGHTFKPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KA0 EIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 EIRNAVEMMIARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KA0 SSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SSEILMMFQQVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KA0 LQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LQVSGLCWRLKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNII
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KA0 REFASDFEVGECWGYNRFFRLDLLANEGYLNPQNDTVILRFQVRSPTFFQKSRDQHWYIT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 REFASDFEVGECWGYNRFFRLDLLANEGYLNPQNDTVILRFQVRSPTFFQKSRDQHWYIT
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KA0 QLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDALETRAKKSACSDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 QLEAAQTSYIQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDALETRAKKSACSDM
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KA0 LLEGGPTTASVREAKEDEEDEEKIQNEDYHHELSDGDLDLDLVYEDEVNQLDGSSSSASS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LLEGGPTTASVREAKEDEEDEEKIQNEDYHHELSDGDLDLDLVYEDEVNQLDGSSSSASS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KA0 TATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPAGSSHGYVGSSSRISRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 TATSNTEENDIDEETMSGENDVEYNNMELEEGELMEDAAAAGPAGSSHGYVGSSSRISRR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KA0 THLCSAATSSLLDIDPLILIHLLDLKDRSSIENLWGLQPRPPASLLQPTASYSRKDKDQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 THLCSAATSSLLDIDPLILIHLLDLKDRSSIENLWGLQPRPPASLLQPTASYSRKDKDQR
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KA0 KQQAMWRVPSDLKMLKRLKTQMAEVRCMKTDVKNTLSEIKSSSAASGDMQTSLFSADQAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 KQQAMWRVPSDLKMLKRLKTQMAEVRCMKTDVKNTLSEIKSSSAASGDMQTSLFSADQAA
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KA0 LAACGTENSGRLQDLGMELLAKSSVANCYIRNSTNKKSNSPKPARSSVAGSLSLRRAVDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 LAACGTENSGRLQDLGMELLAKSSVANCYIRNSTNKKSNSPKPARSSVAGSLSLRRAVDP
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KA0 GENSRSKGDCQTLSEGSPGSSQSGSRHSSPRALIHGSIGDILPKTEDRQCKALDSDAVVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GENSRSKGDCQTLSEGSPGSSQSGSRHSSPRALIHGSIGDILPKTEDRQCKALDSDAVVV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KA0 AVFSGLPAVEKRRKMVTLGANAKGGHLEGLQMTDLENNSETGELQPVLPEGASAAPEEGM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AVFSGLPAVEKRRKMVTLGANAKGGHLEGLQMTDLENNSETGELQPVLPEGASAAPEEGM
              850       860       870       880       890       900

              910       920       930       940       950       960
pF1KA0 SSDSDIECDTENEEQEEHTSVGGFHDSFMVMTQPPDEDTHSSFPDGEQIGPEDLSFNTDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SSDSDIECDTENEEQEEHTSVGGFHDSFMVMTQPPDEDTHSSFPDGEQIGPEDLSFNTDE
              910       920       930       940       950       960

           
pF1KA0 NSGR
       ::::
CCDS45 NSGR
           

>>CCDS82174.1 TRIM37 gene_id:4591|Hs108|chr17             (930 aa)
 initn: 6117 init1: 6117 opt: 6117  Z-score: 5063.9  bits: 948.3 E(32554):    0
Smith-Waterman score: 6117; 99.8% identity (100.0% similar) in 925 aa overlap (40-964:6-930)

      10        20        30        40        50        60         
pF1KA0 AEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWA
                                     ..::::::::::::::::::::::::::::
CCDS82                          MDEQSVERWLTEQRAQCPHCRAPLQLRELVNCRWA
                                        10        20        30     

      70        80        90       100       110       120         
pF1KA0 EEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMHGGHTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EEVTQQLDTLQLCSLTKHEENEKDKCENHHEKLSVFCWTCKKCICHQCALWGGMHGGHTF
          40        50        60        70        80        90     

     130       140       150       160       170       180         
pF1KA0 KPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KPLAEIYEQHVTKVNEEVAKLRRRLMELISLVQEVERNVEAVRNAKDERVREIRNAVEMM
         100       110       120       130       140       150     

     190       200       210       220       230       240         
pF1KA0 IARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 IARLDTQLKNKLITLMGQKTSLTQETELLESLLQEVEHQLRSCSKSELISKSSEILMMFQ
         160       170       180       190       200       210     

     250       260       270       280       290       300         
pF1KA0 QVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QVHRKPMASFVTTPVPPDFTSELVPSYDSATFVLENFSTLRQRADPVYSPPLQVSGLCWR
         220       230       240       250       260       270     

     310       320       330       340       350       360         
pF1KA0 LKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNIIREFASDFEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LKVYPDGNGVVRGYYLSVFLELSAGLPETSKYEYRVEMVHQSCNDPTKNIIREFASDFEV
         280       290       300       310       320       330     

     370       380       390       400       410       420         
pF1KA0 GECWGYNRFFRLDLLANEGYLNPQNDTVILRFQVRSPTFFQKSRDQHWYITQLEAAQTSY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GECWGYNRFFRLDLLANEGYLNPQNDTVILRFQVRSPTFFQKSRDQHWYITQLEAAQTSY
         340       350       360       370       380       390     

     430       440       450       460       470       480         
pF1KA0 IQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDALETRAKKSACSDMLLEGGPTTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 IQQINNLKERLTIELSRTQKSRDLSPPDNHLSPQNDDALETRAKKSACSDMLLEGGPTTA
         400       410       420       430       440       450     

     490       500       510       520       530       540         
pF1KA0 SVREAKEDEEDEEKIQNEDYHHELSDGDLDLDLVYEDEVNQLDGSSSSASSTATSNTEEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SVREAKEDEEDEEKIQNEDYHHELSDGDLDLDLVYEDEVNQLDGSSSSASSTATSNTEEN
         460       470       480       490       500       510     

     550       560       570       580       590       600         
pF1KA0 DIDEETMSGENDVEYNNMELEEGELMEDAAAAGPAGSSHGYVGSSSRISRRTHLCSAATS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 DIDEETMSGENDVEYNNMELEEGELMEDAAAAGPAGSSHGYVGSSSRISRRTHLCSAATS
         520       530       540       550       560       570     

     610       620       630       640       650       660         
pF1KA0 SLLDIDPLILIHLLDLKDRSSIENLWGLQPRPPASLLQPTASYSRKDKDQRKQQAMWRVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SLLDIDPLILIHLLDLKDRSSIENLWGLQPRPPASLLQPTASYSRKDKDQRKQQAMWRVP
         580       590       600       610       620       630     

     670       680       690       700       710       720         
pF1KA0 SDLKMLKRLKTQMAEVRCMKTDVKNTLSEIKSSSAASGDMQTSLFSADQAALAACGTENS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SDLKMLKRLKTQMAEVRCMKTDVKNTLSEIKSSSAASGDMQTSLFSADQAALAACGTENS
         640       650       660       670       680       690     

     730       740       750       760       770       780         
pF1KA0 GRLQDLGMELLAKSSVANCYIRNSTNKKSNSPKPARSSVAGSLSLRRAVDPGENSRSKGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 GRLQDLGMELLAKSSVANCYIRNSTNKKSNSPKPARSSVAGSLSLRRAVDPGENSRSKGD
         700       710       720       730       740       750     

     790       800       810       820       830       840         
pF1KA0 CQTLSEGSPGSSQSGSRHSSPRALIHGSIGDILPKTEDRQCKALDSDAVVVAVFSGLPAV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 CQTLSEGSPGSSQSGSRHSSPRALIHGSIGDILPKTEDRQCKALDSDAVVVAVFSGLPAV
         760       770       780       790       800       810     

     850       860       870       880       890       900         
pF1KA0 EKRRKMVTLGANAKGGHLEGLQMTDLENNSETGELQPVLPEGASAAPEEGMSSDSDIECD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EKRRKMVTLGANAKGGHLEGLQMTDLENNSETGELQPVLPEGASAAPEEGMSSDSDIECD
         820       830       840       850       860       870     

     910       920       930       940       950       960    
pF1KA0 TENEEQEEHTSVGGFHDSFMVMTQPPDEDTHSSFPDGEQIGPEDLSFNTDENSGR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TENEEQEEHTSVGGFHDSFMVMTQPPDEDTHSSFPDGEQIGPEDLSFNTDENSGR
         880       890       900       910       920       930




964 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:35:19 2016 done: Mon Nov  7 03:35:20 2016
 Total Scan time:  5.010 Total Display time:  0.140

Function used was FASTA [36.3.4 Apr, 2011]
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