(Linear) (Six-base) MAPSORT of: KIAA0898.seq Check: 9983 from: 1 to: 2892 KIAA0898.orf With 182 enzymes: SgfI * July 15, 2010 18:28 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 1932 2892 Size: 1932 960 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 610 649 2402 2495 2660 2687 2708 2873 Size: 610 39 1753 93 165 27 21 165 Cuts at: 2873 2892 Size: 19 Fragments arranged by size: 1753 610 165 165 93 39 27 21 19 AflII C'TTAA_G Cuts at: 0 1873 2892 Size: 1873 1019 AflIII A'CryG_T Cuts at: 0 414 2892 Size: 414 2478 AleI CACnn'nnGTG Cuts at: 0 78 424 2892 Size: 78 346 2468 Fragments arranged by size: 2468 346 78 AlwNI CAG_nnn'CTG Cuts at: 0 883 1468 1738 2376 2509 2892 Size: 883 585 270 638 133 383 Fragments arranged by size: 883 638 585 383 270 133 ApaLI G'TGCA_C Cuts at: 0 350 2892 Size: 350 2542 ApoI r'AATT_y Cuts at: 0 401 852 1084 1896 2892 Size: 401 451 232 812 996 Fragments arranged by size: 996 812 451 401 232 AseI AT'TA_AT Cuts at: 0 1849 2892 Size: 1849 1043 AvaI C'yCGr_G Cuts at: 0 1235 2429 2892 Size: 1235 1194 463 Fragments arranged by size: 1235 1194 463 BanII G_rGCy'C Cuts at: 0 147 724 992 2892 Size: 147 577 268 1900 Fragments arranged by size: 1900 577 268 147 BbsI GAAGACnn'nnnn_ Cuts at: 0 628 2483 2892 Size: 628 1855 409 Fragments arranged by size: 1855 628 409 BbvCI CC'TCA_GC Cuts at: 0 29 2892 Size: 29 2863 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 736 770 2892 Size: 736 34 2122 Fragments arranged by size: 2122 736 34 BciVI GTATCCnnnnn_n' Cuts at: 0 1156 2892 Size: 1156 1736 BclI T'GATC_A Cuts at: 0 470 2892 Size: 470 2422 BfrBI ATG'CAT Cuts at: 0 369 2892 Size: 369 2523 BglII A'GATC_T Cuts at: 0 1548 2856 2892 Size: 1548 1308 36 Fragments arranged by size: 1548 1308 36 Bme1580I G_kGCm'C Cuts at: 0 354 2006 2892 Size: 354 1652 886 Fragments arranged by size: 1652 886 354 BmgBI CAC'GTC Cuts at: 0 417 2892 Size: 417 2475 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 157 942 1006 1423 1691 2138 2360 2663 Size: 157 785 64 417 268 447 222 303 Cuts at: 2663 2892 Size: 229 Fragments arranged by size: 785 447 417 303 268 229 222 157 64 Bpu10I CC'TnA_GC Cuts at: 0 29 2892 Size: 29 2863 BsaBI GATnn'nnATC Cuts at: 0 1373 1526 1547 1553 1559 2892 Size: 1373 153 21 6 6 1333 Fragments arranged by size: 1373 1333 153 21 6 6 BsaHI Gr'CG_yC Cuts at: 0 456 2892 Size: 456 2436 BsaWI w'CCGG_w Cuts at: 0 1880 2892 Size: 1880 1012 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 667 697 2892 Size: 667 30 2195 Fragments arranged by size: 2195 667 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 1516 2752 2892 Size: 1516 1236 140 Fragments arranged by size: 1516 1236 140 BseYI C'CCAG_C Cuts at: 0 1115 2892 Size: 1115 1777 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1256 2892 Size: 1256 1636 BsiHKAI G_wGCw'C Cuts at: 0 147 168 354 680 724 992 2892 Size: 147 21 186 326 44 268 1900 Fragments arranged by size: 1900 326 268 186 147 44 21 BsmI GAATG_Cn' Cuts at: 0 371 555 1117 2892 Size: 371 184 562 1775 Fragments arranged by size: 1775 562 371 184 BsmBI CGTCTCn'nnnn_ Cuts at: 0 463 2892 Size: 463 2429 Bsp1286I G_dGCh'C Cuts at: 0 147 168 354 680 724 992 2006 2892 Size: 147 21 186 326 44 268 1014 886 Fragments arranged by size: 1014 886 326 268 186 147 44 21 BspHI T'CATG_A Cuts at: 0 2789 2892 Size: 2789 103 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 1741 1932 2296 2892 Size: 1741 191 364 596 Fragments arranged by size: 1741 596 364 191 BsrDI GCAATG_nn' Cuts at: 0 23 87 156 1997 2892 Size: 23 64 69 1841 895 Fragments arranged by size: 1841 895 69 64 23 BsrFI r'CCGG_y Cuts at: 0 2480 2892 Size: 2480 412 BssSI C'ACGA_G Cuts at: 0 1409 1531 2892 Size: 1409 122 1361 Fragments arranged by size: 1409 1361 122 BstAPI GCAn_nnn'nTGC Cuts at: 0 684 1738 2892 Size: 684 1054 1154 Fragments arranged by size: 1154 1054 684 BstBI TT'CG_AA Cuts at: 0 2322 2892 Size: 2322 570 BstEII G'GTnAC_C Cuts at: 0 2565 2892 Size: 2565 327 BstYI r'GATC_y Cuts at: 0 728 879 1548 1554 1560 2856 2892 Size: 728 151 669 6 6 1296 36 Fragments arranged by size: 1296 728 669 151 36 6 6 BtgI C'CryG_G Cuts at: 0 764 1761 2892 Size: 764 997 1131 Fragments arranged by size: 1131 997 764 BtsI GCAGTG_nn' Cuts at: 0 560 2112 2336 2491 2892 Size: 560 1552 224 155 401 Fragments arranged by size: 1552 560 401 224 155 DraI TTT'AAA Cuts at: 0 387 2015 2892 Size: 387 1628 877 Fragments arranged by size: 1628 877 387 EaeI y'GGCC_r Cuts at: 0 2045 2892 Size: 2045 847 EarI CTCTTCn'nnn_ Cuts at: 0 239 428 905 1703 2263 2319 2741 2892 Size: 239 189 477 798 560 56 422 151 Fragments arranged by size: 798 560 477 422 239 189 151 56 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 0 389 2892 Size: 389 2503 EcoICRI GAG'CTC Cuts at: 0 145 722 990 2892 Size: 145 577 268 1902 Fragments arranged by size: 1902 577 268 145 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 157 610 649 942 1006 1423 1691 2138 Size: 157 453 39 293 64 417 268 447 Cuts at: 2138 2360 2402 2495 2660 2663 2687 2708 2873 Size: 222 42 93 165 3 24 21 165 Cuts at: 2873 2892 Size: 19 Fragments arranged by size: 453 447 417 293 268 222 165 165 157 93 64 42 39 24 21 19 3 EcoNI CCTnn'n_nnAGG Cuts at: 0 2690 2892 Size: 2690 202 EcoO109I rG'GnC_Cy Cuts at: 0 1744 2848 2892 Size: 1744 1104 44 Fragments arranged by size: 1744 1104 44 EcoRV GAT'ATC Cuts at: 0 713 2892 Size: 713 2179 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 1333 2892 Size: 1333 1559 HaeII r_GCGC'y Cuts at: 0 126 2892 Size: 126 2766 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 697 729 864 896 2892 Size: 697 32 135 32 1996 Fragments arranged by size: 1996 697 135 32 32 HindIII A'AGCT_T Cuts at: 0 598 2492 2892 Size: 598 1894 400 Fragments arranged by size: 1894 598 400 MfeI C'AATT_G Cuts at: 0 2238 2892 Size: 2238 654 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 0 1086 1244 1314 1847 2892 Size: 1086 158 70 533 1045 Fragments arranged by size: 1086 1045 533 158 70 MslI CAynn'nnrTG Cuts at: 0 52 78 161 347 424 1766 1806 2756 Size: 52 26 83 186 77 1342 40 950 Cuts at: 2756 2788 2892 Size: 32 104 Fragments arranged by size: 1342 950 186 104 83 77 52 40 32 26 MspA1I CmG'CkG Cuts at: 0 113 588 997 1735 1816 2680 2892 Size: 113 475 409 738 81 864 212 Fragments arranged by size: 864 738 475 409 212 113 81 NcoI C'CATG_G Cuts at: 0 764 1761 2892 Size: 764 997 1131 Fragments arranged by size: 1131 997 764 NsiI A_TGCA'T Cuts at: 0 371 2892 Size: 371 2521 NspI r_CATG'y Cuts at: 0 1430 1440 2127 2171 2892 Size: 1430 10 687 44 721 Fragments arranged by size: 1430 721 687 44 10 PpuMI rG'GwC_Cy Cuts at: 0 1744 2892 Size: 1744 1148 PsiI TTA'TAA Cuts at: 0 604 2892 Size: 604 2288 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 0 1025 1057 2892 Size: 1025 32 1835 Fragments arranged by size: 1835 1025 32 PstI C_TGCA'G Cuts at: 0 247 1743 1940 2612 2892 Size: 247 1496 197 672 280 Fragments arranged by size: 1496 672 280 247 197 PvuII CAG'CTG Cuts at: 0 113 588 997 1735 2680 2892 Size: 113 475 409 738 945 212 Fragments arranged by size: 945 738 475 409 212 113 SacI G_AGCT'C Cuts at: 0 147 724 992 2892 Size: 147 577 268 1900 Fragments arranged by size: 1900 577 268 147 SapI GCTCTTCn'nnn_ Cuts at: 0 2319 2741 2892 Size: 2319 422 151 Fragments arranged by size: 2319 422 151 SfcI C'TryA_G Cuts at: 0 243 1460 1739 1936 2608 2892 Size: 243 1217 279 197 672 284 Fragments arranged by size: 1217 672 284 279 243 197 SmaI CCC'GGG Cuts at: 0 1237 2892 Size: 1237 1655 SmlI C'TyrA_G Cuts at: 0 1873 2892 Size: 1873 1019 SpeI A'CTAG_T Cuts at: 0 186 1279 2892 Size: 186 1093 1613 Fragments arranged by size: 1613 1093 186 SphI G_CATG'C Cuts at: 0 1430 2892 Size: 1430 1462 StyI C'CwwG_G Cuts at: 0 764 1761 2570 2892 Size: 764 997 809 322 Fragments arranged by size: 997 809 764 322 TatI w'GTAC_w Cuts at: 0 2658 2892 Size: 2658 234 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 774 806 2892 Size: 774 32 2086 Fragments arranged by size: 2086 774 32 Tth111I GACn'n_nGTC Cuts at: 0 2376 2892 Size: 2376 516 XmaI C'CCGG_G Cuts at: 0 1235 2892 Size: 1235 1657 Enzymes that do cut: AarI AcuI AflII AflIII AleI AlwNI ApaLI ApoI AseI AvaI BanII BbsI BbvCI BcgI BciVI BclI BfrBI BglII Bme1580I BmgBI BpmI Bpu10I BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiHKAI BsmI BsmBI Bsp1286I BspHI BspMI BsrDI BsrFI BssSI BstAPI BstBI BstEII BstYI BtgI BtsI DraI EaeI EarI EciI EcoICRI Eco57MI EcoNI EcoO109I EcoRV FalI HaeII Hin4I HindIII MfeI MmeI MslI MspA1I NcoI NsiI NspI PpuMI PsiI PsrI PstI PvuII SacI SapI SfcI SmaI SmlI SpeI SphI StyI TatI TstI Tth111I XmaI Enzymes that do not cut: AatII AccI Acc65I AclI AfeI AgeI AhdI AlfI AloI ApaI AscI AsiSI AvrII BaeI BamHI BanI BbeI BglI BlpI BmrI BmtI BplI BpuEI BsaI BsaAI BsiEI BsiWI BspEI BsrBI BsrGI BssHII BstXI BstZ17I Bsu36I BtgZI ClaI CspCI DraIII DrdI EagI EcoRI FseI FspI FspAI HincII HpaI KasI KpnI MluI MscI NaeI NarI NdeI NgoMIV NheI NotI NruI PacI PasI PciI PflMI PfoI PmeI PmlI PpiI PshAI PspOMI PspXI PvuI RsrII SacII SalI SanDI SbfI ScaI SexAI SfiI SfoI SgfI SgrAI SnaBI SrfI SspI StuI SwaI TaqII XbaI XcmI XhoI XmnI ZraI