Result of FASTA (omim) for
pFN21AE0127
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE0127, 376 aa
1>>>pF1KE0127 376 - 376 aa - 376 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3865+/-0.000392; mu= 15.8393+/- 0.024
mean_var=62.1631+/-12.012, 0's: 0 Z-trim(111.6): 26 B-trim: 31 in 1/55
Lambda= 0.162670
statistics sampled from 20257 (20270) to 20257 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.238), width: 16
Scan time: 7.830
The best scores are: opt bits E(85289)
NP_001171726 (OMIM: 300777,300872) trimethyllysine ( 376) 2607 620.6 1.8e-177
NP_060666 (OMIM: 300777,300872) trimethyllysine di ( 421) 2315 552.1 8.5e-157
XP_011529484 (OMIM: 300777,300872) PREDICTED: trim ( 370) 1881 450.2 3.5e-126
XP_016885109 (OMIM: 300777,300872) PREDICTED: trim ( 259) 1771 424.4 1.5e-118
XP_016873892 (OMIM: 603312) PREDICTED: gamma-butyr ( 387) 431 110.0 9.9e-24
XP_005253217 (OMIM: 603312) PREDICTED: gamma-butyr ( 387) 431 110.0 9.9e-24
XP_011518704 (OMIM: 603312) PREDICTED: gamma-butyr ( 387) 431 110.0 9.9e-24
XP_005253218 (OMIM: 603312) PREDICTED: gamma-butyr ( 387) 431 110.0 9.9e-24
NP_003977 (OMIM: 603312) gamma-butyrobetaine dioxy ( 387) 431 110.0 9.9e-24
XP_005253216 (OMIM: 603312) PREDICTED: gamma-butyr ( 387) 431 110.0 9.9e-24
>>NP_001171726 (OMIM: 300777,300872) trimethyllysine dio (376 aa)
initn: 2607 init1: 2607 opt: 2607 Z-score: 3307.2 bits: 620.6 E(85289): 1.8e-177
Smith-Waterman score: 2607; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)
10 20 30 40 50 60
pF1KE0 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQNTVNRQWNSSLQCDIPERILTY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQNTVNRQWNSSLQCDIPERILTY
310 320 330 340 350 360
370
pF1KE0 RHFVSGTSIEHRGSLI
::::::::::::::::
NP_001 RHFVSGTSIEHRGSLI
370
>>NP_060666 (OMIM: 300777,300872) trimethyllysine dioxyg (421 aa)
initn: 2311 init1: 2311 opt: 2315 Z-score: 2936.0 bits: 552.1 E(85289): 8.5e-157
Smith-Waterman score: 2315; 93.9% identity (95.8% similar) in 359 aa overlap (1-359:1-354)
10 20 30 40 50 60
pF1KE0 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE0 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQNTVNRQWNSSLQCDIPERILTY
:::::::::::::::::::::::::::::::: :. .: ... :. .: :
NP_060 YIEDVGECHNHMIGIGPVLNIYPWNKELYLIRY-----NNYDRAVINTVPYDVVHRWYTA
310 320 330 340 350
370
pF1KE0 RHFVSGTSIEHRGSLI
NP_060 HRTLTIELRRPENEFWVKLKPGRVLFIDNWRVLHGRECFTGYRQLCGCYLTRDDVLNTAR
360 370 380 390 400 410
>>XP_011529484 (OMIM: 300777,300872) PREDICTED: trimethy (370 aa)
initn: 1869 init1: 1869 opt: 1881 Z-score: 2386.5 bits: 450.2 E(85289): 3.5e-126
Smith-Waterman score: 1881; 90.9% identity (93.8% similar) in 307 aa overlap (53-359:2-303)
30 40 50 60 70 80
pF1KE0 YPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRS
: .: . ::::::::::::::::::::::
XP_011 MWVIKEMNQELKYANTVMRFDYVWLRDHCRS
10 20 30
90 100 110 120 130 140
pF1KE0 ASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQK
40 50 60 70 80 90
150 160 170 180 190 200
pF1KE0 QKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHT
100 110 120 130 140 150
210 220 230 240 250 260
pF1KE0 EKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKH
160 170 180 190 200 210
270 280 290 300 310 320
pF1KE0 EGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIY
220 230 240 250 260 270
330 340 350 360 370
pF1KE0 PWNKELYLIRLFKEKQNTVNRQWNSSLQCDIPERILTYRHFVSGTSIEHRGSLI
:::::::::: :. .: ... :. .: :
XP_011 PWNKELYLIRY-----NNYDRAVINTVPYDVVHRWYTAHRTLTIELRRPENEFWVKLKPG
280 290 300 310 320
XP_011 RVLFIDNWRVLHGRECFTGYRQLCGCYLTRDDVLNTARLLGLQA
330 340 350 360 370
>>XP_016885109 (OMIM: 300777,300872) PREDICTED: trimethy (259 aa)
initn: 1792 init1: 1771 opt: 1771 Z-score: 2249.4 bits: 424.4 E(85289): 1.5e-118
Smith-Waterman score: 1771; 98.8% identity (99.6% similar) in 257 aa overlap (1-257:1-257)
10 20 30 40 50 60
pF1KE0 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MWYHRLSHLHSRLQDLLKGGVIYPALPQPNFKSLLPLAVHWHHTASKSLTCAWQQHEDHF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE0 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASVDLCIKPKTIRLDETTLFFTW
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE0 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIYQQAQVPSVDCQSFLETNEGLKKF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE0 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYGRMWYFTSDFSRGDTAYTKLALD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE0 RHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAAEQVLQKAPEEFELLSKVPLKHE
:::::::::::::. .:
XP_016 RHTDTTYFQEPCGFLAFSY
250
>>XP_016873892 (OMIM: 603312) PREDICTED: gamma-butyrobet (387 aa)
initn: 392 init1: 223 opt: 431 Z-score: 547.1 bits: 110.0 E(85289): 9.9e-24
Smith-Waterman score: 431; 28.9% identity (66.2% similar) in 225 aa overlap (71-293:29-253)
50 60 70 80 90 100
pF1KE0 WHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASV
. :::::.: ..:: .... :.: . ..
XP_016 MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEAL
10 20 30 40 50
110 120 130 140 150
pF1KE0 DLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIY--Q
:. : : . .:. ...:::: : .... .:: : . : . .: .... : .
XP_016 DVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS
60 70 80 90 100 110
160 170 180 190 200 210
pF1KE0 QAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYG
. :.:..: .. :. .: :.:... ::. . .. .. ::..:.... :.::
XP_016 ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYG
120 130 140 150 160 170
220 230 240 250 260 270
pF1KE0 RMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAA
. : . .. ...::: :. ::: ...: :.:..::.:. ::: . .:::: .
XP_016 HTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVC
180 190 200 210 220 230
280 290 300 310 320 330
pF1KE0 EQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQ
... .. :. :..::
XP_016 QKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDT
240 250 260 270 280 290
>>XP_005253217 (OMIM: 603312) PREDICTED: gamma-butyrobet (387 aa)
initn: 392 init1: 223 opt: 431 Z-score: 547.1 bits: 110.0 E(85289): 9.9e-24
Smith-Waterman score: 431; 28.9% identity (66.2% similar) in 225 aa overlap (71-293:29-253)
50 60 70 80 90 100
pF1KE0 WHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASV
. :::::.: ..:: .... :.: . ..
XP_005 MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEAL
10 20 30 40 50
110 120 130 140 150
pF1KE0 DLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIY--Q
:. : : . .:. ...:::: : .... .:: : . : . .: .... : .
XP_005 DVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS
60 70 80 90 100 110
160 170 180 190 200 210
pF1KE0 QAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYG
. :.:..: .. :. .: :.:... ::. . .. .. ::..:.... :.::
XP_005 ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYG
120 130 140 150 160 170
220 230 240 250 260 270
pF1KE0 RMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAA
. : . .. ...::: :. ::: ...: :.:..::.:. ::: . .:::: .
XP_005 HTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVC
180 190 200 210 220 230
280 290 300 310 320 330
pF1KE0 EQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQ
... .. :. :..::
XP_005 QKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDT
240 250 260 270 280 290
>>XP_011518704 (OMIM: 603312) PREDICTED: gamma-butyrobet (387 aa)
initn: 392 init1: 223 opt: 431 Z-score: 547.1 bits: 110.0 E(85289): 9.9e-24
Smith-Waterman score: 431; 28.9% identity (66.2% similar) in 225 aa overlap (71-293:29-253)
50 60 70 80 90 100
pF1KE0 WHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASV
. :::::.: ..:: .... :.: . ..
XP_011 MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEAL
10 20 30 40 50
110 120 130 140 150
pF1KE0 DLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIY--Q
:. : : . .:. ...:::: : .... .:: : . : . .: .... : .
XP_011 DVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS
60 70 80 90 100 110
160 170 180 190 200 210
pF1KE0 QAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYG
. :.:..: .. :. .: :.:... ::. . .. .. ::..:.... :.::
XP_011 ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYG
120 130 140 150 160 170
220 230 240 250 260 270
pF1KE0 RMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAA
. : . .. ...::: :. ::: ...: :.:..::.:. ::: . .:::: .
XP_011 HTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVC
180 190 200 210 220 230
280 290 300 310 320 330
pF1KE0 EQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQ
... .. :. :..::
XP_011 QKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDT
240 250 260 270 280 290
>>XP_005253218 (OMIM: 603312) PREDICTED: gamma-butyrobet (387 aa)
initn: 392 init1: 223 opt: 431 Z-score: 547.1 bits: 110.0 E(85289): 9.9e-24
Smith-Waterman score: 431; 28.9% identity (66.2% similar) in 225 aa overlap (71-293:29-253)
50 60 70 80 90 100
pF1KE0 WHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASV
. :::::.: ..:: .... :.: . ..
XP_005 MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEAL
10 20 30 40 50
110 120 130 140 150
pF1KE0 DLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIY--Q
:. : : . .:. ...:::: : .... .:: : . : . .: .... : .
XP_005 DVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS
60 70 80 90 100 110
160 170 180 190 200 210
pF1KE0 QAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYG
. :.:..: .. :. .: :.:... ::. . .. .. ::..:.... :.::
XP_005 ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYG
120 130 140 150 160 170
220 230 240 250 260 270
pF1KE0 RMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAA
. : . .. ...::: :. ::: ...: :.:..::.:. ::: . .:::: .
XP_005 HTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVC
180 190 200 210 220 230
280 290 300 310 320 330
pF1KE0 EQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQ
... .. :. :..::
XP_005 QKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDT
240 250 260 270 280 290
>>NP_003977 (OMIM: 603312) gamma-butyrobetaine dioxygena (387 aa)
initn: 392 init1: 223 opt: 431 Z-score: 547.1 bits: 110.0 E(85289): 9.9e-24
Smith-Waterman score: 431; 28.9% identity (66.2% similar) in 225 aa overlap (71-293:29-253)
50 60 70 80 90 100
pF1KE0 WHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASV
. :::::.: ..:: .... :.: . ..
NP_003 MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEAL
10 20 30 40 50
110 120 130 140 150
pF1KE0 DLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIY--Q
:. : : . .:. ...:::: : .... .:: : . : . .: .... : .
NP_003 DVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS
60 70 80 90 100 110
160 170 180 190 200 210
pF1KE0 QAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYG
. :.:..: .. :. .: :.:... ::. . .. .. ::..:.... :.::
NP_003 ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYG
120 130 140 150 160 170
220 230 240 250 260 270
pF1KE0 RMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAA
. : . .. ...::: :. ::: ...: :.:..::.:. ::: . .:::: .
NP_003 HTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVC
180 190 200 210 220 230
280 290 300 310 320 330
pF1KE0 EQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQ
... .. :. :..::
NP_003 QKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDT
240 250 260 270 280 290
>>XP_005253216 (OMIM: 603312) PREDICTED: gamma-butyrobet (387 aa)
initn: 392 init1: 223 opt: 431 Z-score: 547.1 bits: 110.0 E(85289): 9.9e-24
Smith-Waterman score: 431; 28.9% identity (66.2% similar) in 225 aa overlap (71-293:29-253)
50 60 70 80 90 100
pF1KE0 WHHTASKSLTCAWQQHEDHFELKYANTVMRFDYVWLRDHCRSASCYNSKTHQRSLDTASV
. :::::.: ..:: .... :.: . ..
XP_005 MACTIQKAEALDGAHLMQILWYDEEESLYPAVWLRDNCPCSDCYLDSAKARKLLVEAL
10 20 30 40 50
110 120 130 140 150
pF1KE0 DLCIKPKTIRLDETTLFFTWPDGHVTKYDLNWLVKNSYEGQKQKVIQPRILWNAEIY--Q
:. : : . .:. ...:::: : .... .:: : . : . .: .... : .
XP_005 DVNIGIKGLIFDRKKVYITWPDEHYSEFQADWLKKRCFSKQARAKLQRELFFPECQYWGS
60 70 80 90 100 110
160 170 180 190 200 210
pF1KE0 QAQVPSVDCQSFLETNEGLKKFLQNFLLYGIAFVENVPPTQEHTEKLAERISLIRETIYG
. :.:..: .. :. .: :.:... ::. . .. .. ::..:.... :.::
XP_005 ELQLPTLDFEDVLRYDEHAYKWLSTLKKVGIVRLTGASDKPGEVSKLGKRMGFLYLTFYG
120 130 140 150 160 170
220 230 240 250 260 270
pF1KE0 RMWYFTSDFSRGDTAYTKLALDRHTDTTYFQEPCGIQVFHCLKHEGTGGRTLLVDGFYAA
. : . .. ...::: :. ::: ...: :.:..::.:. ::: . .:::: .
XP_005 HTWQVQDKIDANNVAYTTGKLSFHTDYPALHHPPGVQLLHCIKQTVTGGDSEIVDGFNVC
180 190 200 210 220 230
280 290 300 310 320 330
pF1KE0 EQVLQKAPEEFELLSKVPLKHEYIEDVGECHNHMIGIGPVLNIYPWNKELYLIRLFKEKQ
... .. :. :..::
XP_005 QKLKKNNPQAFQILSSTFVDFTDIGVDYCDFSVQSKHKIIELDDKGQVVRINFNNATRDT
240 250 260 270 280 290
376 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 01:53:20 2016 done: Fri Nov 4 01:53:21 2016
Total Scan time: 7.830 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]